mRNA_H-elongata_contig170044.4341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170044.4341.1
Unique NamemRNA_H-elongata_contig170044.4341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170044.4341.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.450e-7
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    7 GVADFLVPEKRYEESVNRDWKPCQRVVMEWKE 102
            G ADFLV E+RY ESV R+W+P +RV+MEWKE
Sbjct: 1436 GEADFLVSERRYNESVGRNWRPSERVMMEWKE 1467
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BLAST of mRNA_H-elongata_contig170044.4341.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.570e-7
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    7 GVADFLVPEKRYEESVNRDWKPCQRVVMEWKE 102
            G ADFLV E+RY +SV R+W+P +RV+MEWKE
Sbjct: 1395 GEADFLVSERRYNKSVGRNWRPSERVMMEWKE 1426
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170044.4341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP1_ECTSI2.450e-768.75WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE8.570e-765.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170044contigH-elongata_contig170044:874..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.7166927-CDS-H-elongata_contig170044:873..9841622929991.7166927-CDS-H-elongata_contig170044:873..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170044 874..984 +
1691679237.6776726-CDS-H-elongata_contig170044:873..9841691679237.6776726-CDS-H-elongata_contig170044:873..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170044 874..984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170044.4341.1prot_H-elongata_contig170044.4341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170044 874..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170044.4341.1

>prot_H-elongata_contig170044.4341.1 ID=prot_H-elongata_contig170044.4341.1|Name=mRNA_H-elongata_contig170044.4341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
VSGVADFLVPEKRYEESVNRDWKPCQRVVMEWKEET*
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mRNA from alignment at H-elongata_contig170044:874..984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170044.4341.1 ID=mRNA_H-elongata_contig170044.4341.1|Name=mRNA_H-elongata_contig170044.4341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig170044:874..984+ (Himanthalia elongata Himel1 dioecious)
GTCTCGGGCGTGGCGGATTTCCTGGTCCCCGAGAAGCGTTACGAGGAGTC
GGTCAACCGAGACTGGAAGCCTTGCCAGCGGGTGGTGATGGAGTGGAAAG
AGGAGACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig170044:874..984+

>mRNA_H-elongata_contig170044.4341.1 ID=mRNA_H-elongata_contig170044.4341.1|Name=mRNA_H-elongata_contig170044.4341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig170044:874..984+ (Himanthalia elongata Himel1 dioecious)
GTCTCGGGCGTGGCGGATTTCCTGGTCCCCGAGAAGCGTTACGAGGAGTC
GGTCAACCGAGACTGGAAGCCTTGCCAGCGGGTGGTGATGGAGTGGAAAG
AGGAGACATAGGTCTCGGGCGTGGCGGATTTCCTGGTCCCCGAGAAGCGT
TACGAGGAGTCGGTCAACCGAGACTGGAAGCCTTGCCAGCGGGTGGTGAT
GGAGTGGAAAGAGGAGACATAG
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