mRNA_H-elongata_contig17001.4340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17001.4340.1
Unique NamemRNA_H-elongata_contig17001.4340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17001.4340.1 vs. uniprot
Match: D7FVC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVC1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.580e-47
Identity = 89/185 (48.11%), Postives = 128/185 (69.19%), Query Frame = 2 
Query:  221 LVALVGAIRPWTTQKALLAMVTLAAILRIAWTIVAILTWNAALGVVSMDVHKSLHVVFYGLDYFQAAAAFTLYTILARFWAELAYAARHGSPPARTDRGSGSGRADQYRPVGTPVLLWNVTRAVQHAASTMAFVFAAFATLLQATIWARDPTYVDEWTGFIEAGAYVLASVVMITTAYCAIIELR 775
            ++A++ A RP+TTQKALL+M+TL+A L IAW+++A   W+   G + + V  +L V FYG D+F AA  FTLYTILA+FWA+LA++AR G+  +R       G  D+YRP GTP L+W +TR VQ  +ST+ F  AA AT+ QA +   D  Y++ WT ++E G ++LA+ VM+T AY A++ELR
Sbjct:    5 VMAMLAAFRPFTTQKALLSMLTLSAALSIAWSVLAYEAWDLLHGTLDVSVSVALRVAFYGTDFFLAATTFTLYTILAKFWADLAFSARQGAGASRP-----LGGGDEYRPRGTPTLIWKITRGVQRVSSTVVFAAAALATVFQAVLVTLDSMYLNLWTAYVEGGVFILAAFVMVTAAYYAVVELR 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17001.4340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC1_ECTSI1.580e-4748.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17001contigH-elongata_contig17001:1998..5969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000550.1
Exons5
Model size1522
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17001.4340.1prot_H-elongata_contig17001.4340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17001 3018..5944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.5435147-UTR-H-elongata_contig17001:1997..25071622929991.5435147-UTR-H-elongata_contig17001:1997..2507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 1998..2507 -
1691679237.6080844-UTR-H-elongata_contig17001:1997..25071691679237.6080844-UTR-H-elongata_contig17001:1997..2507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 1998..2507 -
1622929991.557548-UTR-H-elongata_contig17001:2783..30171622929991.557548-UTR-H-elongata_contig17001:2783..3017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 2784..3017 -
1691679237.615243-UTR-H-elongata_contig17001:2783..30171691679237.615243-UTR-H-elongata_contig17001:2783..3017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 2784..3017 -
1622929991.6306298-UTR-H-elongata_contig17001:5944..59691622929991.6306298-UTR-H-elongata_contig17001:5944..5969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 5945..5969 -
1691679237.667383-UTR-H-elongata_contig17001:5944..59691691679237.667383-UTR-H-elongata_contig17001:5944..5969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17001 5945..5969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.5746999-CDS-H-elongata_contig17001:3017..31241622929991.5746999-CDS-H-elongata_contig17001:3017..3124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 3018..3124 -
1691679237.6228697-CDS-H-elongata_contig17001:3017..31241691679237.6228697-CDS-H-elongata_contig17001:3017..3124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 3018..3124 -
1622929991.5867155-CDS-H-elongata_contig17001:3980..41051622929991.5867155-CDS-H-elongata_contig17001:3980..4105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 3981..4105 -
1691679237.6308942-CDS-H-elongata_contig17001:3980..41051691679237.6308942-CDS-H-elongata_contig17001:3980..4105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 3981..4105 -
1622929991.597013-CDS-H-elongata_contig17001:4710..49571622929991.597013-CDS-H-elongata_contig17001:4710..4957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 4711..4957 -
1691679237.6459208-CDS-H-elongata_contig17001:4710..49571691679237.6459208-CDS-H-elongata_contig17001:4710..4957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 4711..4957 -
1622929991.617096-CDS-H-elongata_contig17001:5670..59441622929991.617096-CDS-H-elongata_contig17001:5670..5944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 5671..5944 -
1691679237.6580873-CDS-H-elongata_contig17001:5670..59441691679237.6580873-CDS-H-elongata_contig17001:5670..5944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17001 5671..5944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17001.4340.1

>prot_H-elongata_contig17001.4340.1 ID=prot_H-elongata_contig17001.4340.1|Name=mRNA_H-elongata_contig17001.4340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MVTARLWLLAMVILVVAINGCLLFTSGLALLRVLRAAARDAYSSPRRRLL
ALDDGGAARRGSGGGLVALVGAIRPWTTQKALLAMVTLAAILRIAWTIVA
ILTWNAALGVVSMDVHKSLHVVFYGLDYFQAAAAFTLYTILARFWAELAY
AARHGSPPARTDRGSGSGRADQYRPVGTPVLLWNVTRAVQHAASTMAFVF
AAFATLLQATIWARDPTYVDEWTGFIEAGAYVLASVVMITTAYCAIIELR
*
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mRNA from alignment at H-elongata_contig17001:1998..5969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17001.4340.1 ID=mRNA_H-elongata_contig17001.4340.1|Name=mRNA_H-elongata_contig17001.4340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3972bp|location=Sequence derived from alignment at H-elongata_contig17001:1998..5969- (Himanthalia elongata Himel1 dioecious)
GGCACCCTTCACCTAACTCCCCGCGATGGTGACCGCCAGACTTTGGCTAC
TCGCCATGGTGATCCTCGTGGTCGCAATCAACGGTTGCCTGTTATTCACG
TCCGGACTGGCTCTGCTGCGAGTGCTCCGTGCCGCGGCCCGAGATGCCTA
CAGTAGCCCGAGGCGAAGACTGCTGGCACTGGATGACGGTGGGGCGGCCA
GAAGAGGCTCAGGCGGTGGCCTCGTGGCCCTGGTTGGAGCGATTCGTCCA
TGGACGACGCAGAAGGCGCTATTGGCGATGGTCACCTTGGCGGCCATTCG
TGAGTGAAACCGTGTCTAGCCATAATCCCGAGTCTTATCTATTGTTTTAC
AGACATAACGTACGATGTTTATTTTTGTGCGACTTATTTGTAAGGTGCGC
GACGCTGTATTAGATAAAGGACAGATTTAAATGTAATCGATACACGTAGG
ATATTAATGTACTTTAGGTACGCTCGATAACGGGGCAGCGCTCACGTACC
GCCGCGGCATAAGCTCCAGCTGCGGTGTACGATGCCACGCAAAAGTCACC
TGACGTGTTGGTTTAGCCCAGGCCAAGCCATGAAGAGTGTCCACCGCTTT
TGGCATCGACTGTCCGTGTAGAGAAGGAAAGGGGGATGAGGTCTGGGTAT
CAGGAGGCTAAGGACTTTCCTTCTCGTGCTTCCAGAAGGCTGGGGGATTC
CCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAGG
GGGGAAAGAAGTGTTTTTTTTAAACCCCAAAGGGGGGGGGTGTTCACATN
NNNNNNNNNGGAAGGGGAAGTGGGTCTGGGGAACAGGAGGGTAAATGTTT
TCCTTTGTTTGGTTTAAAAAGGGTGGGGGATTTCCCCCCCCCCCCCTTCA
CACAGAAGAATAAAAAGAGTGAAAAAAGTGTGTGAAGATGATGTATTTTT
GGAAACCCACAGGAGGTGTGCTTGTCAACCTGCGCCCGTCTGTCCTCGAA
CGAAACCCACAGTGCGCATCGCCTGGACGATCGTCGCGATCTTGACGTGG
AACGCCGCATTGGGCGTGGTCTCCATGGATGTCCACAAGAGCCTTCACGT
CGTATTCTATGGCCTCGATTACTTTCAGGCGGCCGCCGCTTTCACCTTAT
ACACGATCTTAGCGCGATTTTGGGCAGAGCTGGCCTACGCTGCGAGGCAC
GGAAGCCCGCCAGCTCGCACCGACCGCGGCAGTGGCAGTGGAAGGGCCGA
CCAGTACAGGTGGGTTGGCGTGCTGATAACCTTTACCGAACAGCTAACAG
TTCCGTCTTGTATCGACAAGGTGATGTCAGAGATTTGCAGGCATGTTATA
TAGTGAATGTTTTGATGAGTCCTCCGGAGCTTCCCGTCGGGCTCTGCGGT
CTACCGAACGGAGTCTATCGAACTGGGACTGTTTTTTTTTGTCTTTTTTT
TAGTTGTTTAATGTTGGAGGGGAATTCCTCTAGATGTGACGGAAGTGACG
GAAGTGCATTCTCCGGAGTATGATTTTTATTTTACTTTTACGTAAAGCTT
TTGTTGCATTTTGCTCCCTCTGTCCTGTTCTGTCCGCGCTTCGGGGTGGA
GCATGAGTTTTGCGTACGGTATCTCACGTTAGTTTAAGACGAAAACATCG
GGACATAATGCACAATCTACTAAATGTTAGTGTATTATAACCTCCCCTCC
TCCGCTCCACCCCCCGCCCCCCCCTAGATAGCGCCTCCTTCCCCTCCTGA
TTTTTTATATATATATATATACTGTATATATACTACTGTAGATTATATCG
TGCCATAAATATATATATCTCAATTCGCAAATAAAACGATCTTGTTGTCC
GCTTCTCGCAGCAGGCCTGTGGGGACGCCCGTCTTGCTATGGAACGTCAC
GCGAGCCGTCCAACACGCAGCCTCCACCATGGCCTTCGTGTTTGCCGCCT
TTGCCACTCTCCTCCAGGCCACTATCTGGGCACGTGACCGTAAGCATCAG
CAGCAATAACGGTAGTTTTCGATGCCCAACCATTGTCGTTTTTGGAGGAG
GTGGCAAGCAATCCGAATCTTTTCTGTGTTTGTGTTTGTGTCTGTTAAAT
TAAACAAAACCGCGCAATCCGGCCCTGTCATGTATTAATCATATCCTGGT
ACATGTGTCATAAACTATACTATACTATAGGTAGTAGGTATTATCCGTAT
GGTTTGTGTCGGAATGTTGCCTTTTTTCGCCTACCGGAACGGAACACCAC
AATGTCACCACAACGTCACCTGTCAGCGTTGAGCGCGTAATCACACGAGG
AAAGCAGTGCCCCTCACCTCAATCGAAATACCTTCGCTTCCCCACCAACA
CACTGGAGTGCTGGCTCGGCAGTCGTCTCGTCTTTGTGGCACTGTATAGT
GTACTGCGGAACCATAGAAAGCGCTGCAGAGGCAGTACGAGTATACGACG
GTTCGCCCTCAACAAGGTTATGTCGCCTAAGGTCATCGTAGGTCACGATA
CATCACACCACACCGTTGGTGATTTGGCTGAGGGGTTCTTAACGCACGGG
TGGTATTGGTATTTTAGAACTATCCACGAGAGGTGTGGGGGAAATTGCCG
AAACGTCCCCGATTAGGGGAGGAGATAGATTAAATTATTCCCCTCTACTG
TATGGGGATGATGTCACTACCGCTATGACGATTGAATCCCGTTATTGACG
ATTTTTGGGATTTCCCTCGCAAAACTGGGGATGCTTGTGCTGTTCCTCCT
CCCCAAGCCATATTGTTGGATCGTTCTTTCTCCTTTAAAAAAACCGCACG
ACATTTTCCGCTGCTTTATCGATGGTGCGCCACTACTTTAAGCAGCCACG
TATGTGGACGAGTGGACGGGATTCATTGAAGCCGGCGCGTATGTGTTGGC
GTCCGTGGTAATGATCACCACCGCCTACTGCGCTATCATCGAGCTGAGGT
GATGGTATTCATAGTGATGGTAGTGTTTCATGTTTGTTTTTTGTTTTGAT
AGATGGGGTGATCTCTTGCAACCATTCCCTGGCACACGCGGGATAGGAGT
AGTGCTCACGACGAATAGCTGTACAAGTATATATGGGAGGATGACGTGCT
ACACCGCTCATTGGCACTAATGATTCATCTTCATAGTCTGCACCTCGAAG
CACCTGGCTCGTCTTAAGGCCCGTGGGATGACTTCGATTAACGGAAGAAG
CTACTAATATGTATTTCTGGCGTCCCTTAACCTTTGGAATGAAAAGGAAA
CGAATTCCGCCCGTTAAGGCCCATTAAGGTCCGTGGTGAGGAGAGGAAAG
AGTGCCAGGTCCCGGTTATGGTCCCTTCTTGTTTGTCAACAAAACATTTG
ATGGTGTTTTTGTGCGGGTGTGTGGATTTTTCTTCTTTTTTTTCTGCAGG
ATGGTGCCGATCGAGCTGCCCACGCGGCGTCGAAGGGTATATCGGATTAC
AGCTGTCACTGGTTCTGTTGCCTTTTGTCTCCTCGTGAGGGCGGTGGTAC
TTATCTGGCTGATTGGGAAAGCAATTAAACTTACTACGGAGGTCAGAGAA
AAAAACGTCGCCTTCCTGCGTCATGCATGTGTCAACCCGCAATCCCCCGC
CATTCGGTTCTGAAACTGTCCCCTCTCCCTCCGCGCCCTCGCCCTCCGAT
GTTGGCTATTGATTACAGTGTTGAATATTGGCTCTTGTGGTATAGAAAAC
TGCTATGTATAGGGCATTGGGGGTTTGGTTCATGCAGTGTGTCCAGTGAG
CTCAGAGGTCTCGGCCGAAGAGTGTAACCTCTCCCCGAAGGCCCGAAGGG
GTGAAGGGGTGAACCGCATAATGAACAATGGTTAGTTGGTGGTTGTTGGA
AAGCCTTATTATAGAGAAACCCAACGAGTATCCATGACCAAGTTGTGTAT
CGTATCATACAAAAAATACCGTAAAGCATGTCGTGTGCGGTATCATAGAA
GGAGATCAACGTTCTTTTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig17001:1998..5969-

>mRNA_H-elongata_contig17001.4340.1 ID=mRNA_H-elongata_contig17001.4340.1|Name=mRNA_H-elongata_contig17001.4340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig17001:1998..5969- (Himanthalia elongata Himel1 dioecious)
ATGGTGACCGCCAGACTTTGGCTACTCGCCATGGTGATCCTCGTGGTCGC
AATCAACGGTTGCCTGTTATTCACGTCCGGACTGGCTCTGCTGCGAGTGC
TCCGTGCCGCGGCCCGAGATGCCTACAGTAGCCCGAGGCGAAGACTGCTG
GCACTGGATGACGGTGGGGCGGCCAGAAGAGGCTCAGGCGGTGGCCTCGT
GGCCCTGGTTGGAGCGATTCGTCCATGGACGACGCAGAAGGCGCTATTGG
CGATGGTCACCTTGGCGGCCATTCATGGTGACCGCCAGACTTTGGCTACT
CGCCATGGTGATCCTCGTGGTCGCAATCAACGGTTGCCTGTTATTCACGT
CCGGACTGGCTCTGCTGCGAGTGCTCCGTGCCGCGGCCCGAGATGCCTAC
AGTAGCCCGAGGCGAAGACTGCTGGCACTGGATGACGGTGGGGCGGCCAG
AAGAGGCTCAGGCGGTGGCCTCGTGGCCCTGGTTGGAGCGATTCGTCCAT
GGACGACGCAGAAGGCGCTATTGGCGATGGTCACCTTGGCGGCCATTCTG
CGCATCGCCTGGACGATCGTCGCGATCTTGACGTGGAACGCCGCATTGGG
CGTGGTCTCCATGGATGTCCACAAGAGCCTTCACGTCGTATTCTATGGCC
TCGATTACTTTCAGGCGGCCGCCGCTTTCACCTTATACACGATCTTAGCG
CGATTTTGGGCAGAGCTGGCCTACGCTGCGAGGCACGGAAGCCCGCCAGC
TCGCACCGACCGCGGCAGTGGCAGTGGAAGGGCCGACCAGTACAGTGCGC
ATCGCCTGGACGATCGTCGCGATCTTGACGTGGAACGCCGCATTGGGCGT
GGTCTCCATGGATGTCCACAAGAGCCTTCACGTCGTATTCTATGGCCTCG
ATTACTTTCAGGCGGCCGCCGCTTTCACCTTATACACGATCTTAGCGCGA
TTTTGGGCAGAGCTGGCCTACGCTGCGAGGCACGGAAGCCCGCCAGCTCG
CACCGACCGCGGCAGTGGCAGTGGAAGGGCCGACCAGTACAGGCCTGTGG
GGACGCCCGTCTTGCTATGGAACGTCACGCGAGCCGTCCAACACGCAGCC
TCCACCATGGCCTTCGTGTTTGCCGCCTTTGCCACTCTCCTCCAGGCCAC
TATCTGGGCACGTGACCGCCTGTGGGGACGCCCGTCTTGCTATGGAACGT
CACGCGAGCCGTCCAACACGCAGCCTCCACCATGGCCTTCGTGTTTGCCG
CCTTTGCCACTCTCCTCCAGGCCACTATCTGGGCACGTGACCCCACGTAT
GTGGACGAGTGGACGGGATTCATTGAAGCCGGCGCGTATGTGTTGGCGTC
CGTGGTAATGATCACCACCGCCTACTGCGCTATCATCGAGCTGAGGTGAC
CACGTATGTGGACGAGTGGACGGGATTCATTGAAGCCGGCGCGTATGTGT
TGGCGTCCGTGGTAATGATCACCACCGCCTACTGCGCTATCATCGAGCTG
AGGTGA
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