prot_H-elongata_contig169982.4338.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig169982.4338.1
Unique Nameprot_H-elongata_contig169982.4338.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
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BLAST of mRNA_H-elongata_contig169982.4338.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 
Query:   16 PQELLKDSIQVLRQKCDSMLAEVEAFESGVDLDMAM 51
            P+ELLKDSIQVLRQKCDSM+AEVEAFESGVD D AM
Sbjct:  325 PKELLKDSIQVLRQKCDSMIAEVEAFESGVDFDEAM 360
[Close]
BLAST of mRNA_H-elongata_contig169982.4338.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.070e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0 
Query:   16 PQELLKDSIQVLRQKCDSMLAEVEAFESGVDLDMAM 51
            P+ELLKDSIQVLRQKCDSM+AEVEAFESG+D D AM
Sbjct:  327 PKELLKDSIQVLRQKCDSMIAEVEAFESGIDFDEAM 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169982.4338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPF8_ECTSI1.500e-1188.89DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE2.070e-1186.11DNA-directed RNA polymerases I and III subunit RPA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169982contigH-elongata_contig169982:283..441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169982.4338.1mRNA_H-elongata_contig169982.4338.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig169982 10..1295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig169982.4338.1 ID=prot_H-elongata_contig169982.4338.1|Name=mRNA_H-elongata_contig169982.4338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MFTCCPEMPLRPTPHPQELLKDSIQVLRQKCDSMLAEVEAFESGVDLDMA
MS*
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