mRNA_H-elongata_contig169823.4333.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: D7G1I0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI) HSP 1 Score: 199 bits (506), Expect = 3.140e-58 Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQA 312
RSMVSAENVREQLGRLM RLELRMVSTEFT RDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVW MFEEFVLTSKNYIRTVTGVQA
Sbjct: 568 RSMVSAENVREQLGRLMGRLELRMVSTEFTARDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQA 671
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A6H5L043_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L043_9PHAE) HSP 1 Score: 174 bits (442), Expect = 4.780e-49 Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 1
Query: 40 GRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQA 312
RLM RLELRMVSTEFT RDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVW MFEEFVLTSKNYIRTVTGVQA
Sbjct: 591 SRLMGRLELRMVSTEFTARDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQA 681
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A836CBU4_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU4_9STRA) HSP 1 Score: 164 bits (415), Expect = 2.870e-45 Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RSM SA+NVREQL RLM RL L + STEFT+RDYYTNIKKAL AGMFMQVAH ERS HYLTVKDNQ+V IHPSS LD+KP W +FEEFVLTSKN+IRTVT VQ
Sbjct: 570 RSMGSADNVREQLSRLMQRLNLPLKSTEFTNRDYYTNIKKALCAGMFMQVAHRERSDHYLTVKDNQIVGIHPSSALDSKPEWVIFEEFVLTSKNFIRTVTAVQ 672
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A183QYA0_9TREM (OB_NTP_bind domain-containing protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183QYA0_9TREM) HSP 1 Score: 150 bits (380), Expect = 1.930e-44 Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS+ SA+NVR QL R+M R LR ST+FT RDYY NI+KAL +G FMQVAHLER+GHYLTVKDNQVV +HPS+V+D+KP W ++ EFVLT+KNYIRTVT V+
Sbjct: 20 RSLKSADNVRVQLSRIMDRFSLRRSSTDFTSRDYYINIRKALVSGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVMDHKPEWVLYNEFVLTTKNYIRTVTEVK 122
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A0M3KHY3_ANISI (OB_NTP_bind domain-containing protein n=2 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KHY3_ANISI) HSP 1 Score: 149 bits (377), Expect = 3.950e-44 Identity = 69/104 (66.35%), Postives = 88/104 (84.62%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQA 312
RS+ +A+NVR QL R+M + L+ VST+F +DYY NI+KAL +G FMQVAHLERSGHY+TVKDNQ+V +HPS+VLD+KP WA++ EFVLT+KNYIRTVT V+A
Sbjct: 21 RSLKNADNVRTQLARIMDKYNLKRVSTDFKSKDYYINIRKALVSGFFMQVAHLERSGHYITVKDNQLVQLHPSTVLDHKPEWALYNEFVLTTKNYIRTVTDVKA 124
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: UPI00096B1D29 (pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B1D29) HSP 1 Score: 152 bits (383), Expect = 1.080e-43 Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS+ SA+NVR+QL R+M R L+ ST+F+ +DYYTNI+KAL AG FMQVAHLERSGHYLTVKDNQVV +HPS+ LD+KP W ++ EFVLTSKNYIRT T ++
Sbjct: 130 RSLKSADNVRDQLSRIMDRFNLKRTSTDFSSKDYYTNIRKALVAGFFMQVAHLERSGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTSKNYIRTCTDIK 232
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A1A9V383_GLOAU (OB_NTP_bind domain-containing protein n=4 Tax=Glossina TaxID=7393 RepID=A0A1A9V383_GLOAU) HSP 1 Score: 149 bits (377), Expect = 1.260e-43 Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS+ SA+NVREQL R+M R L+ STEFT +DYY NI+KAL G FMQVAHLER+GHYLT+KDNQ+V +HPS+ LD+KP W ++ EFVLT+KNYIRTVT V+
Sbjct: 60 RSLKSADNVREQLARIMDRFNLKRSSTEFTSKDYYVNIRKALVQGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDVK 162
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A2D4LTP4_9SAUR (OB_NTP_bind domain-containing protein n=2 Tax=Amniota TaxID=32524 RepID=A0A2D4LTP4_9SAUR) HSP 1 Score: 148 bits (374), Expect = 1.390e-43 Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS++SA+NVR+QL R+M R L ST+FT RDYY NI+KAL G FMQVAHLER+GHYLTVKDNQVV +HPS+VLD+KP W ++ EFVLT+KNYIRT T ++
Sbjct: 29 RSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK 131
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: A0A293MUQ8_ORNER (OB_NTP_bind domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MUQ8_ORNER) HSP 1 Score: 149 bits (377), Expect = 1.830e-43 Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS+ SA+NVR+QL R+M R LR STEFT +DYY NI+K L +G FMQVAHLER+GHYLT+KDNQVV +HPS+ LD+KP W ++ EFVLT+KNYIRTVT ++
Sbjct: 73 RSLKSADNVRQQLSRIMDRFNLRRTSTEFTSKDYYINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDIK 175
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Match: UPI0014035809 (pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like n=2 Tax=Vertebrata TaxID=7742 RepID=UPI0014035809) HSP 1 Score: 152 bits (384), Expect = 1.860e-43 Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 1
Query: 1 RSMVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWAMFEEFVLTSKNYIRTVTGVQ 309
RS++SA+NVR+QLGR+M R L STEFT RDYY+NI++AL +G FMQVAHLER+GHYLTVKDNQVV +HPS+ LD+KP W ++ EFVLT+KNYIRTVT V+
Sbjct: 166 RSLMSADNVRQQLGRIMDRFALPRRSTEFTSRDYYSNIRRALVSGFFMQVAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTVTDVK 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169823.4333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig169823.4333.1 >prot_H-elongata_contig169823.4333.1 ID=prot_H-elongata_contig169823.4333.1|Name=mRNA_H-elongata_contig169823.4333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MVSAENVREQLGRLMSRLELRMVSTEFTDRDYYTNIKKALTAGMFMQVAHback to top mRNA from alignment at H-elongata_contig169823:97..897- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig169823.4333.1 ID=mRNA_H-elongata_contig169823.4333.1|Name=mRNA_H-elongata_contig169823.4333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig169823:97..897- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig169823:97..897- >mRNA_H-elongata_contig169823.4333.1 ID=mRNA_H-elongata_contig169823.4333.1|Name=mRNA_H-elongata_contig169823.4333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig169823:97..897- (Himanthalia elongata Himel1 dioecious)back to top |