mRNA_H-elongata_contig10521.434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10521.434.1
Unique NamemRNA_H-elongata_contig10521.434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10521.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10521contigH-elongata_contig10521:6609..6954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.5693195-CDS-H-elongata_contig10521:6608..69081622929584.5693195-CDS-H-elongata_contig10521:6608..6908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10521 6609..6908 +
1691679080.1361573-CDS-H-elongata_contig10521:6608..69081691679080.1361573-CDS-H-elongata_contig10521:6608..6908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10521 6609..6908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.585945-UTR-H-elongata_contig10521:6908..69541622929584.585945-UTR-H-elongata_contig10521:6908..6954Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 6909..6954 +
1691679080.146176-UTR-H-elongata_contig10521:6908..69541691679080.146176-UTR-H-elongata_contig10521:6908..6954Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 6909..6954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10521.434.1prot_H-elongata_contig10521.434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10521 6609..6908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10521.434.1

>prot_H-elongata_contig10521.434.1 ID=prot_H-elongata_contig10521.434.1|Name=mRNA_H-elongata_contig10521.434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
SSRTAPTGNPWVVILLDRLNIEREAPETTVAGIILNHPPHRFTPPSSLTH
PGVANPPGDFRRILGEGPNLWRQATSVTLNGATLFPKHHPPPELSLVYH*
back to top

mRNA from alignment at H-elongata_contig10521:6609..6954+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10521.434.1 ID=mRNA_H-elongata_contig10521.434.1|Name=mRNA_H-elongata_contig10521.434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=346bp|location=Sequence derived from alignment at H-elongata_contig10521:6609..6954+ (Himanthalia elongata Himel1 dioecious)
TCATCCCGCACCGCCCCAACTGGAAACCCGTGGGTCGTTATCCTGCTTGA
TCGGTTGAATATCGAGCGCGAAGCGCCAGAGACGACTGTTGCAGGTATCA
TCTTAAACCACCCTCCCCACCGCTTCACGCCTCCTTCGTCATTAACACAT
CCCGGGGTTGCAAATCCTCCAGGAGACTTTCGACGTATCCTCGGGGAGGG
ACCAAATCTATGGCGACAAGCTACAAGTGTCACGTTAAATGGCGCTACTC
TCTTCCCTAAACATCACCCCCCGCCTGAGTTGAGTTTAGTATATCACTGA
AGTGTATTTTGAATAACGGGCTGCGTACGGTAGTGATGCGGAGTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10521:6609..6954+

>mRNA_H-elongata_contig10521.434.1 ID=mRNA_H-elongata_contig10521.434.1|Name=mRNA_H-elongata_contig10521.434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig10521:6609..6954+ (Himanthalia elongata Himel1 dioecious)
TCATCCCGCACCGCCCCAACTGGAAACCCGTGGGTCGTTATCCTGCTTGA
TCGGTTGAATATCGAGCGCGAAGCGCCAGAGACGACTGTTGCAGGTATCA
TCTTAAACCACCCTCCCCACCGCTTCACGCCTCCTTCGTCATTAACACAT
CCCGGGGTTGCAAATCCTCCAGGAGACTTTCGACGTATCCTCGGGGAGGG
ACCAAATCTATGGCGACAAGCTACAAGTGTCACGTTAAATGGCGCTACTC
TCTTCCCTAAACATCACCCCCCGCCTGAGTTGAGTTTAGTATATCACTGA
TCATCCCGCACCGCCCCAACTGGAAACCCGTGGGTCGTTATCCTGCTTGA
TCGGTTGAATATCGAGCGCGAAGCGCCAGAGACGACTGTTGCAGGTATCA
TCTTAAACCACCCTCCCCACCGCTTCACGCCTCCTTCGTCATTAACACAT
CCCGGGGTTGCAAATCCTCCAGGAGACTTTCGACGTATCCTCGGGGAGGG
ACCAAATCTATGGCGACAAGCTACAAGTGTCACGTTAAATGGCGCTACTC
TCTTCCCTAAACATCACCCCCCGCCTGAGTTGAGTTTAGTATATCACTGA
back to top