mRNA_H-elongata_contig16972.4328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16972.4328.1
Unique NamemRNA_H-elongata_contig16972.4328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: D7FKR7_ECTSI (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 9.970e-41
Identity = 72/104 (69.23%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LGPLKSLLLRRLGPNAPVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            L PL++LLL ++G     A L+ +  L F  LR  LL  APLDV+WIKQVN AEA+FWRRSQGTRVDYSDKIL FECGGQQWVNEV FPVGTL++PN KDLDYM
Sbjct:  331 LQPLENLLLEKVGSTLSPAALKDISSLDFAGLRDHLLAVAPLDVSWIKQVNNAEAEFWRRSQGTRVDYSDKILGFECGGQQWVNEVSFPVGTLEEPNGKDLDYM 434          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: E1ZSA7_CHLVA (FAD-binding PCMH-type domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZSA7_CHLVA)

HSP 1 Score: 119 bits (299), Expect = 1.780e-29
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LGPLKSLLLRRLGPNAPVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            L PL++LLL RL    P A+ E V+ L  T  R +LL   PLD AW+K+VN AEA++WRR +G RV +SD++L F+CGGQQWV E  FP GTL KP+ +D+ YM
Sbjct:  270 LAPLRTLLLSRL----PAAEAEEVEGLSATQCRDRLLALGPLDAAWVKKVNQAEAEYWRRCEGMRVGWSDELLGFDCGGQQWVLETAFPAGTLDKPDGRDIAYM 369          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: A0A8J5FHI7_ZINOF (FAD-binding PCMH-type domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FHI7_ZINOF)

HSP 1 Score: 116 bits (291), Expect = 3.730e-28
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   64 EGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            + +D L FT+LR KLL   PL++  +K+VN AEAD+WR+S+G RV +SD+IL F+CGGQQWV+E CFP GTLK P+ KDLD++
Sbjct:  382 QDIDQLSFTELRDKLLALDPLNIGHVKKVNQAEADYWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLKSPSMKDLDFI 464          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: UPI0010A0ABD3 (L-galactono-1,4-lactone dehydrogenase 2, mitochondrial-like n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0010A0ABD3)

HSP 1 Score: 109 bits (273), Expect = 9.690e-28
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   58 DLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            D   +D L FT+LR KLL   PL+  ++ +VN AEA++W++S+G RV +SD+IL F+CGGQQWV+E CFP GTL  P+ KDL+YM
Sbjct:   39 DEPDIDQLSFTELRDKLLALDPLNKDYVVEVNKAEAEYWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLANPSMKDLEYM 123          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: UPI001C4B9ABE (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B9ABE)

HSP 1 Score: 113 bits (283), Expect = 1.720e-27
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 1
Query:   64 EGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            + +D L FT+LR KLL   PL++  + +VN AEAD+WR+S+G RV +SD+IL F+CGGQQWV+E CFP GTLK P+ KDLD++
Sbjct:  211 QDIDQLSFTELRDKLLALDPLNIGHVIKVNQAEADYWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLKSPSMKDLDFI 293          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: A0A7S3C8M9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C8M9_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 2.790e-27
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 LGPLKSLLLRRLGPNAPVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            LGPL++L L   G      DL G   L F DLR  LLE +PLDV  +++VN AEA+FWRRS+G RV YSD+IL F+CGGQQWV E+  P GTL KP+  D+DY+
Sbjct:  349 LGPLRALALE--GGARKAEDLAG---LSFADLRTMLLESSPLDVNHVRRVNEAEAEFWRRSEGHRVGYSDEILQFDCGGQQWVLEMAAPAGTLAKPSYADVDYV 447          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: A0A314Y5M1_PRUYE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314Y5M1_PRUYE)

HSP 1 Score: 112 bits (281), Expect = 3.050e-27
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   49 PVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            PV +   ++ L FT+LR KLL   PLD   + +VN AEA+FWR+S+G RV +SD+IL F+CGGQQWV+E CFPVGTL KP+ KDL+Y+
Sbjct:  201 PVKNDVDINELSFTELRDKLLALDPLDKDHVVKVNQAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPVGTLSKPSLKDLEYI 288          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: A0A6J1EAT5_CUCMO (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1EAT5_CUCMO)

HSP 1 Score: 108 bits (271), Expect = 3.490e-27
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   55 ADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            +D   ++   FT+LR KLL   PL+   + +VN AEA+FWR+S+G RV +SD+IL F+CGGQQWV+E CFP GTL KPN KD++Y+
Sbjct:    8 SDERDINEFSFTELRDKLLALDPLNKEHVVKVNQAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLAKPNMKDIEYI 93          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: M5W7D9_PRUPE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5W7D9_PRUPE)

HSP 1 Score: 112 bits (281), Expect = 3.930e-27
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   49 PVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            PV +   ++ L FT+LR KLL   PLD   + +VN AEA+FWR+S+G RV +SD+IL F+CGGQQWV+E CFPVGTL KP+ KDL+Y+
Sbjct:  268 PVKNDVDINELSFTELRDKLLALDPLDKDHVVKVNQAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPVGTLSKPSLKDLEYI 355          
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Match: A1Y2Z1_VITVI (L-galactono-1,4-lactone dehydrogenase (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A1Y2Z1_VITVI)

HSP 1 Score: 108 bits (271), Expect = 4.680e-27
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   70 VDLLKFTDLRGKLLEEAPLDVAWIKQVNAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKDLDYM 312
            ++ L FT+LR KLL   PL+   + QVN AEA+FWR+S+G RV +SD+IL F+CGGQQWV+E CFP GTL KP+ KDL+Y+
Sbjct:  152 INELSFTELRDKLLALDPLNKDHVIQVNQAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLAKPSMKDLEYI 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16972.4328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR7_ECTSI9.970e-4169.23L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ecto... [more]
E1ZSA7_CHLVA1.780e-2953.85FAD-binding PCMH-type domain-containing protein n=... [more]
A0A8J5FHI7_ZINOF3.730e-2859.04FAD-binding PCMH-type domain-containing protein n=... [more]
UPI0010A0ABD39.690e-2855.29L-galactono-1,4-lactone dehydrogenase 2, mitochond... [more]
UPI001C4B9ABE1.720e-2757.83L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
A0A7S3C8M9_9CHLO2.790e-2755.77Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A314Y5M1_PRUYE3.050e-2757.95FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6J1EAT5_CUCMO3.490e-2754.65L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
M5W7D9_PRUPE3.930e-2757.95FAD-binding PCMH-type domain-containing protein n=... [more]
A1Y2Z1_VITVI4.680e-2759.26L-galactono-1,4-lactone dehydrogenase (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16972contigH-elongata_contig16972:6329..7141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D7FKR7
Preferred nameGLDH
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009536,GO:0016491,GO:0016627,GO:0016632,GO:0016633,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0080049
EggNOG free text desc.D-arabinono-1,4-lactone oxidase activity
EggNOG OGsCOG0277@1,KOG4730@2759
EC1.3.2.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorymitochondrion
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.4573274-CDS-H-elongata_contig16972:6328..65111622929990.4573274-CDS-H-elongata_contig16972:6328..6511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 6329..6511 -
1691679237.0669801-CDS-H-elongata_contig16972:6328..65111691679237.0669801-CDS-H-elongata_contig16972:6328..6511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 6329..6511 -
1622929990.474048-CDS-H-elongata_contig16972:6994..71411622929990.474048-CDS-H-elongata_contig16972:6994..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 6995..7141 -
1691679237.0786014-CDS-H-elongata_contig16972:6994..71411691679237.0786014-CDS-H-elongata_contig16972:6994..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 6995..7141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16972.4328.1prot_H-elongata_contig16972.4328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16972 6329..7141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16972.4328.1

>prot_H-elongata_contig16972.4328.1 ID=prot_H-elongata_contig16972.4328.1|Name=mRNA_H-elongata_contig16972.4328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
LGPLKSLLLRRLGPNAPVADLEGVDLLKFTDLRGKLLEEAPLDVAWIKQV
NAAEADFWRRSQGTRVDYSDKILAFECGGQQWVNEVCFPVGTLKKPNDKD
LDYMVNGEW*
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mRNA from alignment at H-elongata_contig16972:6329..7141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16972.4328.1 ID=mRNA_H-elongata_contig16972.4328.1|Name=mRNA_H-elongata_contig16972.4328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig16972:6329..7141- (Himanthalia elongata Himel1 dioecious)
CTCGGGCCGCTCAAGAGCCTCCTGCTGAGAAGACTCGGTCCCAACGCGCC AGTCGCTGATTTGGAGGGCGTCGATTTGCTCAAATTCACGGACCTGAGGG GGAAACTCCTTGAGGAAGCACCATTGGACGTCGCCTGGATTAAGCAGGTG AGGAGGCGAGGCTATTGCTGGAATTACGATGGAACAGACAGAGCTTGGGC TTTCAGCTTGCTTGGTCTGCGAGATAGCTTGGATTTGCTGATTGGGGATC AATTGCAACCACGCAGTAGTTCAATAAACCGATAAAACAATCAATCAACT CATCACGGGGTCGCGAGGCGGTATACACCCACTCGTCTCTTACATCGCGA GCTTGAATTGATTTGTACATTAGTGTAATTGCTTTGAAATAGAATGAAGG TGTTCAATGAAATGAAATTTGAACTTCCTATTAACATTAACCCACAAACG CCACAAACGGGGAGGCAGTACTATTTATCGAAAATTCTCCGCACTCTTAC GATGTACCGTATACGTAAGGGCCATAGGCATAGAGATAGAGAGTGGCTAG ATGTCAGTACTGTTTATAAATATAACGTGTTTTTCAGGAAGATGGTGTTA GGCGCTATTGATATTTTTGTGTGTTCACAGGTGAACGCCGCGGAAGCGGA CTTCTGGCGACGGAGCCAAGGCACTCGTGTCGACTACAGCGACAAGATCC TTGCCTTCGAGTGCGGTGGACAGCAGTGGGTCAACGAGGTCTGCTTCCCG GTGGGCACCCTCAAGAAGCCCAACGACAAAGACCTCGACTACATGGTGAA TGGTGAATGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16972:6329..7141-

>mRNA_H-elongata_contig16972.4328.1 ID=mRNA_H-elongata_contig16972.4328.1|Name=mRNA_H-elongata_contig16972.4328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig16972:6329..7141- (Himanthalia elongata Himel1 dioecious)
CTCGGGCCGCTCAAGAGCCTCCTGCTGAGAAGACTCGGTCCCAACGCGCC
AGTCGCTGATTTGGAGGGCGTCGATTTGCTCAAATTCACGGACCTGAGGG
GGAAACTCCTTGAGGAAGCACCATTGGACGTCGCCTGGATTAAGCAGCTC
GGGCCGCTCAAGAGCCTCCTGCTGAGAAGACTCGGTCCCAACGCGCCAGT
CGCTGATTTGGAGGGCGTCGATTTGCTCAAATTCACGGACCTGAGGGGGA
AACTCCTTGAGGAAGCACCATTGGACGTCGCCTGGATTAAGCAGGTGAAC
GCCGCGGAAGCGGACTTCTGGCGACGGAGCCAAGGCACTCGTGTCGACTA
CAGCGACAAGATCCTTGCCTTCGAGTGCGGTGGACAGCAGTGGGTCAACG
AGGTCTGCTTCCCGGTGGGCACCCTCAAGAAGCCCAACGACAAAGACCTC
GACTACATGGTGAATGGTGAATGGTGAGTGAACGCCGCGGAAGCGGACTT
CTGGCGACGGAGCCAAGGCACTCGTGTCGACTACAGCGACAAGATCCTTG
CCTTCGAGTGCGGTGGACAGCAGTGGGTCAACGAGGTCTGCTTCCCGGTG
GGCACCCTCAAGAAGCCCAACGACAAAGACCTCGACTACATGGTGAATGG
TGAATGGTGA
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