mRNA_H-elongata_contig16972.4327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16972.4327.1
Unique NamemRNA_H-elongata_contig16972.4327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: D7FKR7_ECTSI (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.430e-52
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRYARG 343
            ELMRLIE EG+PAPAPIEQRWTSSS+A +SPAHD AS ET+FSWVGVIMYL A+D DAR+RVT+AF AYRDLCK RLWDRYDCAVHWAK+EKPR+  EA DT ARL RR+  G
Sbjct:  436 ELMRLIEREGIPAPAPIEQRWTSSSNATLSPAHDGASPETVFSWVGVIMYLPADDVDARKRVTEAFFAYRDLCKVRLWDRYDCAVHWAKIEKPRTAREAEDTRARLGRRFPVG 548          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A835ZG22_9STRA (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG22_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.510e-32
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 VELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            +E++ LIEE  VPAPAPIEQRWT+ S+A MSPA        + SWVG+IMYL +++A  R  +T AF  YRDLCK +LWDRY+C  HWAK+EKP +  EAA   ARL R Y
Sbjct:  371 LEVLALIEEGNVPAPAPIEQRWTAPSAARMSPARVAGG---VASWVGIIMYLPSDEARQRSDITRAFFEYRDLCKEKLWDRYECTEHWAKIEKPDTPEEAASLQARLRRHY 478          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: UPI001C4B9ABE (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B9ABE)

HSP 1 Score: 119 bits (299), Expect = 1.060e-29
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL +LIEEE VPAPAPIEQRWT+SS + MSPA      E IFSWVG+IMYL   D   R+ +TD F +YR L +  LWD+Y    HWAK+E P+ + E A+  ARL +R+
Sbjct:  295 ELKKLIEEEEVPAPAPIEQRWTASSKSLMSPASSTGD-EDIFSWVGIIMYLPTTDPRQRKDITDEFFSYRHLTQTSLWDKYSAYEHWAKIEVPKKKEELAELQARLRKRF 403          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A068V161_COFCA (FAD-binding PCMH-type domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068V161_COFCA)

HSP 1 Score: 120 bits (302), Expect = 1.370e-29
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL +LIE E VPAPAPIEQRWT+ S + MSPAH P   + IFSWVG+IMYL   DA  R+++T+ F  YR L   +LWDRY    HWAK+E P+ + E A   ARL +R+
Sbjct:  464 ELTQLIERENVPAPAPIEQRWTACSKSFMSPAHSPVEDD-IFSWVGIIMYLPTTDARQRKQITEEFFHYRHLTYKQLWDRYSAYEHWAKIEVPKDKEELAALQARLRKRF 572          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A6J1EAT5_CUCMO (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1EAT5_CUCMO)

HSP 1 Score: 114 bits (285), Expect = 3.400e-29
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL +LIE+E +PAPAPIEQRWT+ S + MSPA   A  + IFSWVG+IMYL   DA  R+ +T+ F  YR L +  LWD+Y    HWAK+E P+ + E A   ARL +R+
Sbjct:   95 ELKQLIEKENIPAPAPIEQRWTACSKSPMSPASSSAEDD-IFSWVGIIMYLPTSDARQRKEITEEFFHYRHLTQTLLWDQYSAFEHWAKIEVPKDKDELAALQARLRKRF 203          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A118K1Y7_CYNCS (CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K1Y7_CYNCS)

HSP 1 Score: 119 bits (299), Expect = 3.680e-29
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            ++M LIE+E +PAPAPIEQRWT+SS + MSPA   +S + IFSWVG+I+YL   DA  R+++T+ F  YR L ++RLWD+Y    HWAK+E P+ +AE A   ARL +R+
Sbjct:  472 DVMELIEKEEIPAPAPIEQRWTASSRSLMSPASS-SSNDDIFSWVGIILYLPTTDARQRKQITEEFFHYRHLTQSRLWDQYSAYEHWAKIEVPKDKAELAALQARLRKRF 580          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: UPI001263B44F (L-galactono-1,4-lactone dehydrogenase, mitochondrial-like n=4 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263B44F)

HSP 1 Score: 119 bits (298), Expect = 4.580e-29
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 2
Query:    8 LMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRYA 337
            L +LIE+E +PAPAPIEQRWT+ S + MSPA+ PA  E IFSWVG+IMYL   DA  R+ +T+ F  YR L + +LWD+Y    HWAK+E P+ + E A   ARL +R+A
Sbjct:  449 LKQLIEKEDIPAPAPIEQRWTTRSRSPMSPAYSPAEDE-IFSWVGIIMYLPTTDARQRKDITEEFFHYRHLTQTQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFA 557          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: V7BKI5_PHAVU (FAD-binding PCMH-type domain-containing protein n=14 Tax=Phaseoleae TaxID=163735 RepID=V7BKI5_PHAVU)

HSP 1 Score: 119 bits (297), Expect = 6.190e-29
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL +LIE E +PAPAPIEQRWT+SS + +SPA  P S + IFSWVG+IMYL + DA  R+ +T+ F  YR L + +LWDRY    HWAK+E P+ + E A   ARL +R+
Sbjct:  444 ELKQLIENEEIPAPAPIEQRWTASSRSPLSPASSP-SEDDIFSWVGIIMYLPSTDARQRKDITEEFFHYRHLTQEKLWDRYSAFEHWAKIEVPKDKEELAALQARLRKRF 552          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A059DHN7_EUCGR (FAD-binding PCMH-type domain-containing protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059DHN7_EUCGR)

HSP 1 Score: 119 bits (297), Expect = 6.440e-29
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL RLIE+E +PAPAPIEQRWT+ S + MS A  PA  + IFSWVGVIMYL   DA  R+ +T+ F  YR L + RLWDRY    HWAK+E P+   E A   ARL +R+
Sbjct:  454 ELKRLIEKEDIPAPAPIEQRWTARSKSPMSLASSPAEDD-IFSWVGVIMYLPTSDARQRKEITEEFFHYRRLTQERLWDRYSAYEHWAKIEVPKDNEELAALQARLRKRF 562          
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Match: A0A2H9ZZJ4_9ASPA (L-galactono-1,4-lactone dehydrogenase 2, mitochondrial n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZZJ4_9ASPA)

HSP 1 Score: 118 bits (296), Expect = 8.510e-29
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 2
Query:    5 ELMRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLSAEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADTSARLHRRY 334
            EL +LIE E VPAPAPIEQRWT+ S + MSPA   +S E IFSWVG+IMYL   DA  R+ +T+ F  Y+DL + RLW +Y    HWAK+E P+ + E AD  ARL +R+
Sbjct:  445 ELKKLIESENVPAPAPIEQRWTACSQSIMSPAS--SSQEDIFSWVGIIMYLPTMDARQRKEITEEFFLYKDLLQMRLWAKYFAYEHWAKIEVPKDKEELADLQARLRKRF 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16972.4327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR7_ECTSI2.430e-5277.88L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ecto... [more]
A0A835ZG22_9STRA4.510e-3256.76L-galactono-1,4-lactone dehydrogenase n=1 Tax=Trib... [more]
UPI001C4B9ABE1.060e-2954.55L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
A0A068V161_COFCA1.370e-2954.55FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6J1EAT5_CUCMO3.400e-2951.82L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
A0A118K1Y7_CYNCS3.680e-2952.73CO dehydrogenase flavoprotein-like, FAD-binding, s... [more]
UPI001263B44F4.580e-2953.64L-galactono-1,4-lactone dehydrogenase, mitochondri... [more]
V7BKI5_PHAVU6.190e-2953.64FAD-binding PCMH-type domain-containing protein n=... [more]
A0A059DHN7_EUCGR6.440e-2955.45FAD-binding PCMH-type domain-containing protein n=... [more]
A0A2H9ZZJ4_9ASPA8.510e-2954.55L-galactono-1,4-lactone dehydrogenase 2, mitochond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16972contigH-elongata_contig16972:3909..4907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.9e-44
Seed eggNOG ortholog2880.D7FKR7
Preferred nameGLDH
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009536,GO:0016491,GO:0016627,GO:0016632,GO:0016633,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0080049
EggNOG free text desc.D-arabinono-1,4-lactone oxidase activity
EggNOG OGsCOG0277@1,KOG4730@2759
EC1.3.2.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size346
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16972.4327.1prot_H-elongata_contig16972.4327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16972 3909..4897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.3723786-CDS-H-elongata_contig16972:3908..40111622929990.3723786-CDS-H-elongata_contig16972:3908..4011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 3909..4011 -
1691679237.0007315-CDS-H-elongata_contig16972:3908..40111691679237.0007315-CDS-H-elongata_contig16972:3908..4011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 3909..4011 -
1622929990.3857222-CDS-H-elongata_contig16972:4314..44331622929990.3857222-CDS-H-elongata_contig16972:4314..4433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 4315..4433 -
1691679237.0142446-CDS-H-elongata_contig16972:4314..44331691679237.0142446-CDS-H-elongata_contig16972:4314..4433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 4315..4433 -
1622929990.3988209-CDS-H-elongata_contig16972:4783..48971622929990.3988209-CDS-H-elongata_contig16972:4783..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 4784..4897 -
1691679237.034149-CDS-H-elongata_contig16972:4783..48971691679237.034149-CDS-H-elongata_contig16972:4783..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 4784..4897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.4093492-UTR-H-elongata_contig16972:4897..49071622929990.4093492-UTR-H-elongata_contig16972:4897..4907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16972 4898..4907 -
1691679237.0564897-UTR-H-elongata_contig16972:4897..49071691679237.0564897-UTR-H-elongata_contig16972:4897..4907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16972 4898..4907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16972.4327.1

>prot_H-elongata_contig16972.4327.1 ID=prot_H-elongata_contig16972.4327.1|Name=mRNA_H-elongata_contig16972.4327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MRLIEEEGVPAPAPIEQRWTSSSSAAMSPAHDPASTETIFSWVGVIMYLS
AEDADARRRVTDAFLAYRDLCKNRLWDRYDCAVHWAKLEKPRSEAEAADT
SARLHRRYARG*
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mRNA from alignment at H-elongata_contig16972:3909..4907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16972.4327.1 ID=mRNA_H-elongata_contig16972.4327.1|Name=mRNA_H-elongata_contig16972.4327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig16972:3909..4907- (Himanthalia elongata Himel1 dioecious)
GGTTGAGCTAATGCGTCTGATTGAGGAGGAGGGGGTGCCGGCTCCGGCGC CCATCGAGCAACGGTGGACATCCTCTAGCAGCGCGGCCATGAGCCCTGCG CACGATCCAGCCTCGACCGAAACGGTGAGGCCACTTGTCATCGCTCTAAA TACCTACTGCTACCTTCCTTGATCTGCTTTATGTGATGATCACATATACT GTACAGCATGTCTGCATGTGCGCAGCGTGCCAAAGCATTCGAGATACAAG ACTTCACTAAACGTGGGATGCAGGGCGAGATCTGTGGCCGTTGCGTGCCA ACCAAAGAACCGTACTTGTCTGACGATCAATATATCGTACATCTCGAGGT AATAAGGTCGTCCTCATCTGTTTCTCTTGCACTGGCAAGGCTCATCAACA GCGAGAACACACTTTAAAGCCAAGCGTGTGTACTGACTGACGCGGTGCGT TTTTCTTGGCCTTTGAGGGTCCAGATCTTTTCGTGGGTTGGCGTCATCAT GTACCTCTCGGCGGAAGACGCGGACGCTCGCCGGCGGGTTACCGATGCCT TCCTAGCTTACCGCGACCTGTGCAAGAACCGTCTCTGGGACAGGTGCGTC GATCACACCGATAGTCATGACCGCTTCTATTGAGGGTAATATTAATGTAC CTTGTTCATACAGTATACCGTTGCGGATTTAGAGTAGATTGGCGTCGAGT CGGAAGCTTTCGCGATTGGTTATGAATGAGATTGCCTCGCGTACGACTTA GCTCTGTGTCAAATATTAGAAAGACACGATGACGAGGTCTACAGTAACAC CCCCAAGAATCGCGAAGTGCCAAAATCGCACTGACCAAAGATCACGTAGA AACCCGCGAACGGGTGGCGGGTTTTGGCGGCGCTGAGGCTTGCCAGATAT GACTGCGCCGTACATTGGGCTAAGCTGGAGAAGCCGCGCTCAGAGGCGGA GGCTGCGGACACCTCGGCTAGACTCCACCGTAGGTACGCCCGTGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig16972:3909..4907-

>mRNA_H-elongata_contig16972.4327.1 ID=mRNA_H-elongata_contig16972.4327.1|Name=mRNA_H-elongata_contig16972.4327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig16972:3909..4907- (Himanthalia elongata Himel1 dioecious)
ATGCGTCTGATTGAGGAGGAGGGGGTGCCGGCTCCGGCGCCCATCGAGCA
ACGGTGGACATCCTCTAGCAGCGCGGCCATGAGCCCTGCGCACGATCCAG
CCTCGACCGAAACGATGCGTCTGATTGAGGAGGAGGGGGTGCCGGCTCCG
GCGCCCATCGAGCAACGGTGGACATCCTCTAGCAGCGCGGCCATGAGCCC
TGCGCACGATCCAGCCTCGACCGAAACGATCTTTTCGTGGGTTGGCGTCA
TCATGTACCTCTCGGCGGAAGACGCGGACGCTCGCCGGCGGGTTACCGAT
GCCTTCCTAGCTTACCGCGACCTGTGCAAGAACCGTCTCTGGGACAGATC
TTTTCGTGGGTTGGCGTCATCATGTACCTCTCGGCGGAAGACGCGGACGC
TCGCCGGCGGGTTACCGATGCCTTCCTAGCTTACCGCGACCTGTGCAAGA
ACCGTCTCTGGGACAGATATGACTGCGCCGTACATTGGGCTAAGCTGGAG
AAGCCGCGCTCAGAGGCGGAGGCTGCGGACACCTCGGCTAGACTCCACCG
TAGGTACGCCCGTGGATAAATATGACTGCGCCGTACATTGGGCTAAGCTG
GAGAAGCCGCGCTCAGAGGCGGAGGCTGCGGACACCTCGGCTAGACTCCA
CCGTAGGTACGCCCGTGGATAA
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