mRNA_H-elongata_contig1696.4315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1696.4315.1
Unique NamemRNA_H-elongata_contig1696.4315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A6H5JQJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ8_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.540e-91
Identity = 240/583 (41.17%), Postives = 277/583 (47.51%), Query Frame = 1
Query:  307 SSTVKLERDAKKXXXXXXXXXXXXXXXESHSAGSSNAGTLAHEFAQRHPE-ALQVKVCPIHEGDKSVPNTISSAAEISENVIAPSQPYPSFPLAVPRQS------ADAASAAAVAAADTDVALPV-----EFGTVGPREWTTQQTSESGELINSESEPVHVQL--ESYAITELLPRQELRSGKHPGVKDEEANGHVRSRAATEGTKEGETPWERGWQASELFMPP----------SECKRPD-------GAGVGDLASGL-----------------------RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGR--------------RVPVGLE-----GG------------------FLLP-------------TGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED--KGYPVVGRIALCS 1737
            S+   LE+ A++                SH  GSS A TLAHE +QRHP  AL    CP+        +  S   ++   V A + P P    A           A +  A   AAA T +A  V       G     E   +++  SGE      E  HV L  ES + T   P  +  +    G  +    G        E T     PWERGWQ  E F PP          S   R         GAG+   +S                         RNFT+ QLN FDGG      RGG  RAGK RPIYIAL+G VYD SAGRHLYGP GEYSE AGHD+SRRVA G        +  LDDLSLE L RFE+MTL GWED F ARGYP +GRVVA   P PPRLFSR ELR FDGR              R   G E     GG                   L P             + YA   IY+GV DKVFDVSFGG+E Y EGG Y+CLAGRDASRVLA+MSM+ ED+EG LDYS LT +E KNLADW  +L +  KGYPVVG I L S
Sbjct:   67 STAAALEKRAEELEAAGDLDGAMEALLASHDQGSSRAVTLAHELSQRHPVGALGGNRCPL--------SIRSPRRKVGGGVEAGASPDPEASSAXXXXXXXXXXXAVSVVAPVCAAALTSLASEVLADDNNDGVTSVPEEHCKRSLPSGE------ERRHVTLSGESASATAAGPASQSAATTATGALEP---GKRIDHGGGEPTTTTLLPWERGWQGREGFKPPPSSSALADTGSSASRDAAGTAAAFGAGLSPSSSSFAETGVQSDDALDVGDAEATKLARRNFTVRQLNAFDGGCSAPRMRGGEARAGKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGASHSDRSSNTLLDDLSLENLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRSAHVAGPEYEETERRAGAGREEREVGGGEPGEQVAALGRHEEQPAESLPPEQEAKATANAVCFSNYAARPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVAKLGEGGKGYPVVGWIDLGS 629          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: D7FRN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN9_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 2.450e-80
Identity = 161/290 (55.52%), Postives = 178/290 (61.38%), Query Frame = 1
Query:  994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPV------------GLEGG-------------------------FLLP-------------TGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED--KGY 1707
            RNFT+ QLN FDGG      RGG  RA K RPIYIAL+G VYD SAGRHLYGP GEYSE AGHD+SRRVA G  +        LDDLSLEGL RFE+MTL GWED F ARGYP +GRVVA   P PPRLFSR ELR FDGR   V            G  GG                          L P             + YA   IY+GV DKVFDVSFGG+E Y EGG Y+CLAGRDASRVLA+MSM+ ED+EG LDYS LT +E KNLADW ++L +  KGY
Sbjct:   34 RNFTVRQLNAFDGGCSAPRMRGGEARAVKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGASRSDRSSSTLLDDLSLEGLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRPADVAASEHGETERGAGAGGGEREVGGGEPGEQAAVLARQEEQPAESLPPEQEAKATANAVYFSNYAAQPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVEKLGEGGKGY 320          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S1ZS28_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZS28_TRICV)

HSP 1 Score: 183 bits (465), Expect = 4.530e-50
Identity = 106/248 (42.74%), Postives = 146/248 (58.87%), Query Frame = 1
Query:  991 LRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGW-EDIFVARGYPVVGRVV-AIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVGRI 1725
            L NFT +QL  FDGG +   ++ G       +P+Y++++G+VYD S GRHLYGP G +   AG +    +ARG     S D  DLD++S + LS  E+  L GW E +  +  YPV+GR++   A P+  R+ S+EEL  +DG+   +        P GYA   IY+    KV+D+SFGG   Y +GGAY C AG+DASR LA+MS+ P D E     S L+ KE+K L DW K  E+ K YP VGR+
Sbjct:   16 LNNFTSVQLLHFDGGEDSVGKKKG------EKPVYLSVKGVVYDASKGRHLYGPGGPFEVYAGRECGAALARG-----SLDQSDLDNISCDDLSMNEQTELEGWVERLKSSLCYPVLGRLIPGDALPSEDRVVSKEELAQYDGKIQDI--------PEGYAAAPIYLAAKGKVYDMSFGGVSFYGKGGAYNCFAGKDASRALAKMSLDPADTENT-STSDLSEKEIKVLNDWVKTFEERKKYPCVGRL 243          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S0CLZ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLZ8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.600e-44
Identity = 106/249 (42.57%), Postives = 142/249 (57.03%), Query Frame = 1
Query:  994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLS-LEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPP-RLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVGRIA 1728
            RN+T  QL  F+G I+K        R   T+ +Y++L G V+D + G++ YGP G Y   AGH+     A+      S D+D LDD+   E L+  EK  L GW + F   R YPV G ++     +P  R+ S+EE+   DG            +P GYA+  IY+GV ++VFDVSFGG E Y +GGAY+  AG+DASR LA+MS  P D     D S L+ KELK L DW K  ++ KGYPVVG+IA
Sbjct:   63 RNYTEAQLLKFNGSIDKTG------RFEVTQQVYLSLNGTVFDVTEGKNFYGPGGPYELFAGHECGVAFAK-----MSFDNDHLDDMDGCEKLTNSEKHELIGWMEKFTYYRAYPVKGSLIPNNKLSPSDRILSKEEIAKHDGNGT---------VPEGYAVAPIYIGVGERVFDVSFGGVEFYGKGGAYERFAGKDASRALAKMSFDPADTANT-DTSDLSEKELKVLNDWVKTFDERKGYPVVGKIA 290          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: D7FY31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY31_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.620e-42
Identity = 112/273 (41.03%), Postives = 142/273 (52.01%), Query Frame = 1
Query:  925 LFMPPSECKRPDGAGVGDLASGLRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARG-YPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVGRIALCSP 1740
            +F P       D     D     RNFTI QL+ FDG  E               P Y+ALRG V+D S+    Y   G Y   AGHD S  +A G     S D  DL+  S   L+  E  +L GW + +     YPVVG+VV    P  PR FS EELR FDG            +P GYA P IYVGV  KV+D+S+GGAE+Y  G +Y   AGRDAS  LA+MS +PE ++   D S L+ +++  L DWA ++E K YPV+G IA  +P
Sbjct:   33 MFQPARAPATDDDESAADRPPPPRNFTIEQLHEFDGRDE-------------ATPAYVALRGEVFDVSSKPEHYKVGGGYHLFAGHDASYSLATG-----SLDPADLEK-SWSELNVMENESLDGWVEKYKNFSEYPVVGKVVT--PPAQPREFSLEELRPFDGTSD---------IPEGYAAPPIYVGVRGKVYDMSYGGAEMYGPGKSYNLFAGRDASVALAKMSFAPEHLDNP-DMSTLSKEDMTVLQDWASKMEKK-YPVIGTIANSAP 273          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S4NEZ3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEZ3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.700e-41
Identity = 104/245 (42.45%), Postives = 132/245 (53.88%), Query Frame = 1
Query:  994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIF-VARGYPVVGRVVAIAT-PTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRL-EDKGYPVVG 1719
            RNFT +QL  FDG  ++        + G+ +P+Y+A++GIV+D S+GR  YGP G Y   +GH+    +A+      S D+  +DD S E L+  EK  L GW + F   R YPV GR+V   + P   +  S EEL   DG            +P GYA   IYV    KVFDVSFGG   Y + GAY   AG DASR LA+MS  P D+E     + LT KE K L DW K   E K YPVVG
Sbjct:   56 RNFTAMQLKHFDGTKDE--------KTGEDKPVYLAVKGIVFDVSSGRDFYGPGGAYEMFSGHECGVALAK-----MSFDEKYIDDFSWESLNFGEKTELDGWIEKFQYYRSYPVKGRLVPEKSIPPSDKTVSTEELAKNDG---------SMEIPEGYAAAPIYVAAGGKVFDVSFGGVTFYGKDGAYSSFAGVDASRALAKMSFDPSDIENPT-INDLTEKEKKCLDDWIKTFGERKQYPVVG 277          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A836CD55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD55_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.980e-41
Identity = 93/208 (44.71%), Postives = 123/208 (59.13%), Query Frame = 1
Query: 1096 IALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVG 1719
            + ++G V+D S+   +YG  G Y  L  HD S  +A G     S D  DLD   L  L+  ++ TLSGW ++  A+G  V+GR+V   TP PP+ F R ELR F+GR+  V        P GYA+P +Y+     VFDVSFGG ++Y  G  Y CL G DAS VLARMSM+  D++G LD + L+ KE +NL  W  +L  KGYPVVG
Sbjct:   11 LCMQGYVFDVSSDPGVYGEGGRYHFLTRHDASYCLATG-----SCDAADLDREDLSCLTPQQQRTLSGWVEMLQAKGCAVLGRLVR--TP-PPKPFQRHELRHFNGRQSQV--------PAGYAIPPMYMACNGVVFDVSFGGLDMYDVGCPYACLVGNDASCVLARMSMTQADIDGTLDMANLSEKEQRNLTAWEAKLRQKGYPVVG 202          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S3Y4U5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4U5_HETAK)

HSP 1 Score: 158 bits (399), Expect = 3.220e-40
Identity = 102/244 (41.80%), Postives = 131/244 (53.69%), Query Frame = 1
Query:  994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVG 1719
            RNFT  QL  +DG  E E             PIY+ALRG+V+D S+    YG +G Y+  AGHD +R +A+      S ++DDL+  S EG S  E  +L GW   F   + YP+VGRVV    P  PR  SREEL+   G++           P GYA   I + V   V+DVSFGG   Y EG AY   AG+DASR LA+MS   EDV    +   L+ KELK L DW    ++ K YP++G
Sbjct:   65 RNFTFEQLKKYDGSEEDE-------------PIYVALRGVVFDVSSAPTHYGKDGAYNLFAGHDATRNLAK-----MSFEEDDLNKPSTEGFSVSEIDSLDGWYTTFKEYKQYPIVGRVVE---PPKPRKISREELQEMRGKQT---------CPEGYATAPICISVKGNVYDVSFGGVTFYMEGAAYHLFAGKDASRALAKMSFKDEDVNST-ELKDLSEKELKVLDDWENTFKNRKKYPIIG 277          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A836C9I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.370e-39
Identity = 103/249 (41.37%), Postives = 132/249 (53.01%), Query Frame = 1
Query:  991 LRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVGRIALC 1734
            LRNFT+ QL  F G   K  +   +       PIY+ALRG V+D S  RH YG  G Y   AGHD S  +AR      S D  DL+ ++ E LS  E+ TL GW   F   +GYP+VGRVV    P P  ++++E+L    G       EG   +P G A   + V V  KVFDVS+GGA  Y +G  Y    GRDASR LA+MS   E+++     + L+  E+  + DWA R E KGY VVG    C
Sbjct:   60 LRNFTLEQLKAFTGVNAKGEDDEDV-------PIYVALRGEVFDVSQARHAYGKEGNYHIFAGHDASVSLAR-----HSLDASDLNKMTWEELSHGERDTLDGWIQQFRDYKGYPMVGRVVTAPLPDPLPVYTKEQLAAGTG-------EGP--IPDGAAAAPMLVAVAGKVFDVSYGGAPHYGKGCPYNLFVGRDASRALAKMSFDAENLDNP-SIADLSLAEVGVMNDWAARFEKKGYRVVGTYPTC 286          
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S2R2U9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2U9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.930e-33
Identity = 92/273 (33.70%), Postives = 144/273 (52.75%), Query Frame = 1
Query:  976 DLASGL----RNFTILQLNFFDGGIEKEVERGGMV--RAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFV-ARGYPVVGRVVAIAT-PTPPRLFSREELRLFDGR--------------RVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKG-YPVVGRI 1725
            +L+S L    RNFT  QL ++DG +++ + +  ++   +   +P+Y++L+GIV+D S   + YGP G Y   AG +    +A+     +S  D+ +D  SL  L+  E+  L+ W   F   R YP++GR+V+ +  P P RL ++++L   DG                      G  ++P GY    IY+GV   VFDVSFGG E Y +G  Y   AG+D SR LA+MS+   +++    +  L  KE K L DW    +DK  YP+VG++
Sbjct:   49 ELSSSLFISKRNFTSEQLAYYDGTVDETIPKRKVLVKESDNKKPVYLSLKGIVFDVSEATNFYGPGGPYESFAGRECGMALAKRNMYDASLLDEAVDS-SL--LNEKERTQLAEWIHKFQKVRCYPIMGRLVSSSQLPDPDRLLTKDDLLANDGTIHXXXXXXXXXXXXXXXXXXXGDVVIPEGYGTVPIYLGVDGTVFDVSFGGLEYYGKGCPYHPFAGKDVSRALAKMSLDVAEIDNCAVHD-LNEKECKTLKDWKTSFQDKRKYPIVGQL 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQJ8_9PHAE1.540e-9141.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRN9_ECTSI2.450e-8055.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1ZS28_TRICV4.530e-5042.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0CLZ8_9STRA8.600e-4442.57Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
D7FY31_ECTSI2.620e-4241.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4NEZ3_9STRA1.700e-4142.45Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A836CD55_9STRA1.980e-4144.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y4U5_HETAK3.220e-4041.80Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836C9I0_9STRA6.370e-3941.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R2U9_9STRA4.930e-3333.70Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1696contigH-elongata_contig1696:429..2846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.8
Seed ortholog evalue1.4e-72
Seed eggNOG ortholog2880.D7FRN9
KEGG koko:K17278
GOsGO:0003674,GO:0005488,GO:0005496,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008047,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008289,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0019216,GO:0019218,GO:0019222,GO:0020037,GO:0030234,GO:0031323,GO:0031326,GO:0031984,GO:0032443,GO:0042175,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046890,GO:0046906,GO:0048037,GO:0050789,GO:0050790,GO:0050794,GO:0050810,GO:0062012,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0097384,GO:0098772,GO:0098827,GO:0106118,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.steroid binding
EggNOG OGsKOG1110@1,KOG1110@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-00_003270.1
Exons2
Model size1887
Cds size1707
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1696.4315.1prot_H-elongata_contig1696.4315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1696 483..2720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.4089122-UTR-H-elongata_contig1696:428..4821622929989.4089122-UTR-H-elongata_contig1696:428..482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 429..482 +
1691679236.5927746-UTR-H-elongata_contig1696:428..4821691679236.5927746-UTR-H-elongata_contig1696:428..482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 429..482 +
1622929989.449902-UTR-H-elongata_contig1696:2720..28461622929989.449902-UTR-H-elongata_contig1696:2720..2846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 2721..2846 +
1691679236.6207142-UTR-H-elongata_contig1696:2720..28461691679236.6207142-UTR-H-elongata_contig1696:2720..2846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 2721..2846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.4227788-CDS-H-elongata_contig1696:482..15801622929989.4227788-CDS-H-elongata_contig1696:482..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 483..1580 +
1691679236.6045408-CDS-H-elongata_contig1696:482..15801691679236.6045408-CDS-H-elongata_contig1696:482..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 483..1580 +
1622929989.4352171-CDS-H-elongata_contig1696:2111..27201622929989.4352171-CDS-H-elongata_contig1696:2111..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 2112..2720 +
1691679236.612733-CDS-H-elongata_contig1696:2111..27201691679236.612733-CDS-H-elongata_contig1696:2111..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 2112..2720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1696.4315.1

>prot_H-elongata_contig1696.4315.1 ID=prot_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=569bp
MPKSSTSIEKEIISVACRISWAVMRATYARVVRTVRTGIEHMLGSAVEIA
RTLRTICHPVVVDWMIDSSWRPAVGIFRLPPARISSTVKLERDAKKLEAE
GKLEEAMSKLHESHSAGSSNAGTLAHEFAQRHPEALQVKVCPIHEGDKSV
PNTISSAAEISENVIAPSQPYPSFPLAVPRQSADAASAAAVAAADTDVAL
PVEFGTVGPREWTTQQTSESGELINSESEPVHVQLESYAITELLPRQELR
SGKHPGVKDEEANGHVRSRAATEGTKEGETPWERGWQASELFMPPSECKR
PDGAGVGDLASGLRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIAL
RGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDL
SLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRL
FDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAY
KCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKG
YPVVGRIALCSPSNDQEA*
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mRNA from alignment at H-elongata_contig1696:429..2846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1696.4315.1 ID=mRNA_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig1696:429..2846+ (Himanthalia elongata Himel1 dioecious)
ACTTGAACTGCCTCACTTCCCTTCAGCGCTCTTGGTTACTCGACGTACTG AGGCATGCCTAAGAGTAGCACCAGCATTGAGAAAGAAATAATTTCCGTAG CATGCAGAATTTCATGGGCAGTGATGAGGGCGACGTACGCACGTGTCGTC CGAACCGTTAGGACAGGGATTGAGCATATGTTGGGCAGTGCTGTAGAGAT CGCCAGGACTCTACGAACTATATGTCACCCGGTAGTTGTGGATTGGATGA TCGACAGCTCGTGGCGGCCCGCCGTTGGGATTTTTAGGCTACCACCGGCT CGAATCAGTTCCACGGTAAAGTTGGAGAGGGATGCAAAGAAGCTAGAAGC GGAGGGCAAATTAGAAGAGGCTATGTCGAAGTTACACGAGAGCCACTCCG CAGGTTCTTCGAATGCTGGTACCCTGGCTCACGAGTTCGCGCAACGTCAC CCGGAAGCGCTCCAAGTCAAGGTCTGTCCGATACACGAAGGCGACAAGAG TGTGCCGAACACGATTTCCTCGGCTGCCGAGATCAGTGAGAATGTTATCG CACCCTCGCAACCCTATCCAAGCTTTCCATTGGCTGTTCCAAGGCAGTCG GCTGATGCTGCCAGTGCTGCTGCTGTTGCTGCAGCGGACACGGATGTCGC TCTTCCTGTTGAATTTGGAACAGTCGGACCGCGTGAATGGACCACGCAGC AGACCTCGGAAAGTGGCGAGCTCATAAACTCAGAATCCGAGCCGGTACAC GTACAACTGGAGAGCTACGCGATAACTGAGCTCCTCCCTCGGCAAGAGCT TAGGTCAGGCAAGCACCCTGGCGTGAAAGACGAAGAGGCAAATGGTCATG TTCGGTCGAGGGCTGCAACCGAGGGTACGAAAGAGGGGGAAACTCCGTGG GAGCGAGGTTGGCAAGCGTCCGAGCTTTTCATGCCACCTTCTGAATGCAA GCGTCCAGATGGCGCCGGAGTCGGCGACTTGGCATCAGGGCTTCGGAACT TTACAATACTTCAACTTAACTTTTTCGACGGGGGCATCGAGAAAGAGGTC GAGCGAGGAGGGATGGTGAGGGCGGGGAAAACGCGACCAATCTACATCGC GCTCCGAGGAATTGTGTACGACACCTCTGCCGGTAGGCATCTGTACGGCC CGGTGAGCATCGAAGGTTTGATTTGCGAGAGCGTGCCGTTATGCTTGCCG TAATTATGTAAGCCACCCCTAGGAATTACCAGTAGCAAATACTTAGAATC TAGAAATTGGACGGCGAATAGAACTAAGCGGGACTGAACTGGATGTGGCC GACTCGCGGCCAGCGCTCTTGTGAGGTGAGAAATTTTCTTTTCGTTGAGA AAAAATCACCTACTTCCCACCTCTGCTCTGCTCGTGTGCAGTTACAAGTA ATACTAGCATACGCCGACGATAATCCATATCGACCATCGAACAACGGCGC GAGTACACGAGCACGCAGCGCCCATCATTCCCCGCGACTAGCTCCAAGAA CCGAGTCGACGCGAGAGTGTTTACCACACACGGTAGGTGAGGGATGCCAG TGGTCAAGGCACCCGACACGCCATTTGATCCTTGGTGGCTTGGACCAACG GCACAAGGTCGTTGAAATGTCGTGGATATTTTGTCATACGTTGACGCATC CCTTCCCCCGCCCCTTACCGTGCTCCTGTCCAGAATGGTGAGTACTCCGA ACTCGCTGGCCACGACGTCTCTAGACGTGTCGCGCGAGGTCTGCGGCAAG GCTCATCCCGAGATGATGACGACCTGGACGATCTCTCGCTCGAAGGGTTG AGCCGATTTGAGAAGATGACCCTGAGTGGCTGGGAAGACATCTTCGTTGC GCGCGGCTACCCCGTCGTTGGCAGAGTGGTCGCTATCGCCACCCCAACGC CACCCCGGTTATTTTCTCGCGAGGAGCTGCGGTTGTTTGACGGTCGCCGC GTTCCCGTGGGACTGGAGGGTGGCTTCTTGCTGCCGACGGGTTACGCCTT GCCGTCGATCTATGTCGGCGTAATGGACAAGGTTTTCGATGTTTCCTTCG GCGGTGCAGAGTTGTATTCGGAAGGTGGCGCGTACAAGTGCCTCGCGGGG AGGGATGCTTCGCGCGTGCTGGCGAGGATGTCAATGTCTCCAGAGGACGT TGAGGGCTTCTTGGACTACAGTCGCTTGACGAGCAAGGAGCTTAAAAATC TCGCTGACTGGGCGAAGAGGCTCGAGGACAAAGGTTATCCTGTGGTCGGC CGTATCGCACTATGCAGTCCGTCCAACGATCAAGAGGCGTAAGTGTTTTA TTAGAGTTGCGCCAATTCTCATGGCTCTGCAAGTGCTCCGTCTTCCGTTC CTCTTGCTATCCCTTATGCAAAGCATGTCCTCGGCAACGTCTGATTATCA GCCGTCGGCCATCGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig1696:429..2846+

>mRNA_H-elongata_contig1696.4315.1 ID=mRNA_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3414bp|location=Sequence derived from alignment at H-elongata_contig1696:429..2846+ (Himanthalia elongata Himel1 dioecious)
ATGCCTAAGAGTAGCACCAGCATTGAGAAAGAAATAATTTCCGTAGCATG
CAGAATTTCATGGGCAGTGATGAGGGCGACGTACGCACGTGTCGTCCGAA
CCGTTAGGACAGGGATTGAGCATATGTTGGGCAGTGCTGTAGAGATCGCC
AGGACTCTACGAACTATATGTCACCCGGTAGTTGTGGATTGGATGATCGA
CAGCTCGTGGCGGCCCGCCGTTGGGATTTTTAGGCTACCACCGGCTCGAA
TCAGTTCCACGGTAAAGTTGGAGAGGGATGCAAAGAAGCTAGAAGCGGAG
GGCAAATTAGAAGAGGCTATGTCGAAGTTACACGAGAGCCACTCCGCAGG
TTCTTCGAATGCTGGTACCCTGGCTCACGAGTTCGCGCAACGTCACCCGG
AAGCGCTCCAAGTCAAGGTCTGTCCGATACACGAAGGCGACAAGAGTGTG
CCGAACACGATTTCCTCGGCTGCCGAGATCAGTGAGAATGTTATCGCACC
CTCGCAACCCTATCCAAGCTTTCCATTGGCTGTTCCAAGGCAGTCGGCTG
ATGCTGCCAGTGCTGCTGCTGTTGCTGCAGCGGACACGGATGTCGCTCTT
CCTGTTGAATTTGGAACAGTCGGACCGCGTGAATGGACCACGCAGCAGAC
CTCGGAAAGTGGCGAGCTCATAAACTCAGAATCCGAGCCGGTACACGTAC
AACTGGAGAGCTACGCGATAACTGAGCTCCTCCCTCGGCAAGAGCTTAGG
TCAGGCAAGCACCCTGGCGTGAAAGACGAAGAGGCAAATGGTCATGTTCG
GTCGAGGGCTGCAACCGAGGGTACGAAAGAGGGGGAAACTCCGTGGGAGC
GAGGTTGGCAAGCGTCCGAGCTTTTCATGCCACCTTCTGAATGCAAGCGT
CCAGATGGCGCCGGAGTCGGCGACTTGGCATCAGGGCTTCGGAACTTTAC
AATACTTCAACTTAACTTTTTCGACGGGGGCATCGAGAAAGAGGTCGAGC
GAGGAGGGATGGTGAGGGCGGGGAAAACGCGACCAATCTACATCGCGCTC
CGAGGAATTGTGTACGACACCTCTGCCGGTAGGCATCTGTACGGCCCGAT
GCCTAAGAGTAGCACCAGCATTGAGAAAGAAATAATTTCCGTAGCATGCA
GAATTTCATGGGCAGTGATGAGGGCGACGTACGCACGTGTCGTCCGAACC
GTTAGGACAGGGATTGAGCATATGTTGGGCAGTGCTGTAGAGATCGCCAG
GACTCTACGAACTATATGTCACCCGGTAGTTGTGGATTGGATGATCGACA
GCTCGTGGCGGCCCGCCGTTGGGATTTTTAGGCTACCACCGGCTCGAATC
AGTTCCACGGTAAAGTTGGAGAGGGATGCAAAGAAGCTAGAAGCGGAGGG
CAAATTAGAAGAGGCTATGTCGAAGTTACACGAGAGCCACTCCGCAGGTT
CTTCGAATGCTGGTACCCTGGCTCACGAGTTCGCGCAACGTCACCCGGAA
GCGCTCCAAGTCAAGGTCTGTCCGATACACGAAGGCGACAAGAGTGTGCC
GAACACGATTTCCTCGGCTGCCGAGATCAGTGAGAATGTTATCGCACCCT
CGCAACCCTATCCAAGCTTTCCATTGGCTGTTCCAAGGCAGTCGGCTGAT
GCTGCCAGTGCTGCTGCTGTTGCTGCAGCGGACACGGATGTCGCTCTTCC
TGTTGAATTTGGAACAGTCGGACCGCGTGAATGGACCACGCAGCAGACCT
CGGAAAGTGGCGAGCTCATAAACTCAGAATCCGAGCCGGTACACGTACAA
CTGGAGAGCTACGCGATAACTGAGCTCCTCCCTCGGCAAGAGCTTAGGTC
AGGCAAGCACCCTGGCGTGAAAGACGAAGAGGCAAATGGTCATGTTCGGT
CGAGGGCTGCAACCGAGGGTACGAAAGAGGGGGAAACTCCGTGGGAGCGA
GGTTGGCAAGCGTCCGAGCTTTTCATGCCACCTTCTGAATGCAAGCGTCC
AGATGGCGCCGGAGTCGGCGACTTGGCATCAGGGCTTCGGAACTTTACAA
TACTTCAACTTAACTTTTTCGACGGGGGCATCGAGAAAGAGGTCGAGCGA
GGAGGGATGGTGAGGGCGGGGAAAACGCGACCAATCTACATCGCGCTCCG
AGGAATTGTGTACGACACCTCTGCCGGTAGGCATCTGTACGGCCCGAATG
GTGAGTACTCCGAACTCGCTGGCCACGACGTCTCTAGACGTGTCGCGCGA
GGTCTGCGGCAAGGCTCATCCCGAGATGATGACGACCTGGACGATCTCTC
GCTCGAAGGGTTGAGCCGATTTGAGAAGATGACCCTGAGTGGCTGGGAAG
ACATCTTCGTTGCGCGCGGCTACCCCGTCGTTGGCAGAGTGGTCGCTATC
GCCACCCCAACGCCACCCCGGTTATTTTCTCGCGAGGAGCTGCGGTTGTT
TGACGGTCGCCGCGTTCCCGTGGGACTGGAGGGTGGCTTCTTGCTGCCGA
CGGGTTACGCCTTGCCGTCGATCTATGTCGGCGTAATGGACAAGGTTTTC
GATGTTTCCTTCGGCGGTGCAGAGTTGTATTCGGAAGGTGGCGCGTACAA
GTGCCTCGCGGGGAGGGATGCTTCGCGCGTGCTGGCGAGGATGTCAATGT
CTCCAGAGGACGTTGAGGGCTTCTTGGACTACAGTCGCTTGACGAGCAAG
GAGCTTAAAAATCTCGCTGACTGGGCGAAGAGGCTCGAGGACAAAGGTTA
TCCTGTGGTCGGCCGTATCGCACTATGCAGTCCGTCCAACGATCAAGAGG
CGTAAAATGGTGAGTACTCCGAACTCGCTGGCCACGACGTCTCTAGACGT
GTCGCGCGAGGTCTGCGGCAAGGCTCATCCCGAGATGATGACGACCTGGA
CGATCTCTCGCTCGAAGGGTTGAGCCGATTTGAGAAGATGACCCTGAGTG
GCTGGGAAGACATCTTCGTTGCGCGCGGCTACCCCGTCGTTGGCAGAGTG
GTCGCTATCGCCACCCCAACGCCACCCCGGTTATTTTCTCGCGAGGAGCT
GCGGTTGTTTGACGGTCGCCGCGTTCCCGTGGGACTGGAGGGTGGCTTCT
TGCTGCCGACGGGTTACGCCTTGCCGTCGATCTATGTCGGCGTAATGGAC
AAGGTTTTCGATGTTTCCTTCGGCGGTGCAGAGTTGTATTCGGAAGGTGG
CGCGTACAAGTGCCTCGCGGGGAGGGATGCTTCGCGCGTGCTGGCGAGGA
TGTCAATGTCTCCAGAGGACGTTGAGGGCTTCTTGGACTACAGTCGCTTG
ACGAGCAAGGAGCTTAAAAATCTCGCTGACTGGGCGAAGAGGCTCGAGGA
CAAAGGTTATCCTGTGGTCGGCCGTATCGCACTATGCAGTCCGTCCAACG
ATCAAGAGGCGTAA
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