mRNA_H-elongata_contig105208.431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105208.431.1
Unique NamemRNA_H-elongata_contig105208.431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.930e-34
Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            R LE+LQ GEWI+GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++ RVKFVDP  GKLGLSLVE
Sbjct:  162 RKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVE 240          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.250e-33
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            R LE+LQ GEWI GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++VRVKFVDP  GKLGLSLVE
Sbjct:  307 RKLEDLQEGEWITGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQVRVKFVDPVTGKLGLSLVE 385          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A835YZW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.410e-19
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
            L  L+ G W+ GKVRN+E++GAWVDV AERDGLLHV DMS+ FTP       T D + V VK VD G  +L LS V
Sbjct:  112 LASLERGVWLTGKVRNLESFGAWVDVGAERDGLLHVSDMSEGFTPRVADAFNTGDIISVTVKHVDAGTNRLALSAV 187          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1I4GT85_9LACT (S1 motif domain-containing protein n=35 Tax=Streptococcaceae TaxID=1300 RepID=A0A1I4GT85_9LACT)

HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   13 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            +L+VG+ +EG VRNV ++GA+VD+  + DGL+HV D+SK F  N  +VVA    V V VK +D   GK+ L+LVE
Sbjct:  632 DLRVGQKLEGAVRNVVDFGAFVDIGIKNDGLIHVSDLSKNFVKNPHEVVAVGQIVTVWVKSIDQERGKINLTLVE 706          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI00195F901C (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus loxodontisalivarius TaxID=1349415 RepID=UPI00195F901C)

HSP 1 Score: 75.1 bits (183), Expect = 5.190e-14
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
            L++LQ+G+ +EG VRNV ++GA+VD+    DGL+H+ +MSK+F  +  QVV+  D V V V  VD   GK+ LSLV
Sbjct:  629 LKDLQIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDVVTVWVSKVDLERGKVNLSLV 704          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI0011556344 (S1 RNA-binding domain-containing protein n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI0011556344)

HSP 1 Score: 70.5 bits (171), Expect = 5.270e-14
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   13 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
            +LQ+G+ +EG VRNV ++GA++D+  + +GL HV D+SK+F  N   VVA    V V VK +D   GK+ L+LV
Sbjct:   34 DLQIGQQLEGVVRNVVDFGAFIDIGIKNEGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLV 107          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: R1C2D2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C2D2_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLS 228
            L++L+VG  +EG VR+V+ YGA+VD+    DGLLHV +M+ TF  +A  + A  D+V VRVK VD   G++ LS
Sbjct:   76 LDQLEVGSTVEGTVRSVQQYGAFVDIGFASDGLLHVSEMADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALS 149          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDM-SKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            + L ELQ G+ + G VRNVE +GA+V V AE+DGLLH++DM S  +   A++V  + D V V+VKFVD     LGL++ E
Sbjct:  138 KPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKE 217          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1G6C0D6_9STRE (S1 motif domain-containing protein n=2 Tax=Streptococcus henryi TaxID=439219 RepID=A0A1G6C0D6_9STRE)

HSP 1 Score: 74.3 bits (181), Expect = 9.680e-14
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            + +L++G+ +EG VRNV ++GA+VD+    DGL+H+  MSKTF  +  QVV+  D V V V  +D   GK+ LSLV+
Sbjct:  629 ISDLEIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKTFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLVD 705          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A5C5SDL5_9STRE (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus pharyngis TaxID=1562651 RepID=A0A5C5SDL5_9STRE)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-13
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
            +++LQVG+ +EG VRNV ++GA+VD+    DGL+H+ DM ++F  +  QVV+  + V V +K +D   GK+ LSLV+
Sbjct:  627 IKDLQVGQQLEGTVRNVVDFGAFVDIGIHDDGLVHISDMRRSFVKHPSQVVSVGEIVTVWIKSIDVQRGKINLSLVK 703          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK22_ECTSI5.930e-3477.2230S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KCP4_9PHAE1.250e-3378.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZW7_9STRA2.410e-1956.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1I4GT85_9LACT2.040e-1449.33S1 motif domain-containing protein n=35 Tax=Strept... [more]
UPI00195F901C5.190e-1448.68RNA-binding transcriptional accessory protein n=1 ... [more]
UPI00115563445.270e-1445.95S1 RNA-binding domain-containing protein n=1 Tax=B... [more]
R1C2D2_EMIHU6.050e-1448.65Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2V5P7_9STRA6.050e-1448.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1G6C0D6_9STRE9.680e-1445.45S1 motif domain-containing protein n=2 Tax=Strepto... [more]
A0A5C5SDL5_9STRE1.810e-1344.16RNA-binding transcriptional accessory protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105208contigH-elongata_contig105208:1453..1955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue5.6e-12
Seed eggNOG ortholog1229517.AMFD01000013_gene1379
Preferred nameyhgF
KEGG koko:K06959
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.Tex-like protein N-terminal domain
EggNOG OGs1TPFE@1239,1YBBD@1357,4HAGY@91061,COG2183@1,COG2183@2
COG Functional cat.K
Best tax levelLactococcus
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding domain, S1
Ec32 orthologEc-06_007880.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.4310558-CDS-H-elongata_contig105208:1452..15141622929584.4310558-CDS-H-elongata_contig105208:1452..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105208 1453..1514 +
1691679080.083706-CDS-H-elongata_contig105208:1452..15141691679080.083706-CDS-H-elongata_contig105208:1452..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105208 1453..1514 +
1622929584.444721-CDS-H-elongata_contig105208:1780..19551622929584.444721-CDS-H-elongata_contig105208:1780..1955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105208 1781..1955 +
1691679080.0943584-CDS-H-elongata_contig105208:1780..19551691679080.0943584-CDS-H-elongata_contig105208:1780..1955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105208 1781..1955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105208.431.1prot_H-elongata_contig105208.431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105208 1453..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105208.431.1

>prot_H-elongata_contig105208.431.1 ID=prot_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAE
QVVATRDSVRVRVKFVDPGAGKLGLSLVE
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mRNA from alignment at H-elongata_contig105208:1453..1955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105208.431.1 ID=mRNA_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig105208:1453..1955+ (Himanthalia elongata Himel1 dioecious)
CGGACATTGGAAGAGCTTCAAGTCGGGGAATGGATCGAGGGCAAAGTTCG CAACGTGGAAAAGTGAGAGGGCGCTTTCGCTTCAATTTATGTATATACTT ACTTCCTGCCAGGCCACAAATGTTTTTCAGTGTGTAAACTTCTCTCGGGG GCTGTGCTTTCCAATACTTCCTCGCGGTGCACCTTGAGCCGAAACGAGAT CCAACGCGCTCGGGAACCGGCCGGTCCCGAACGTTTCCTGCTCTGCTACC ATCGCCTCGTGTCGCGCTCTTGCTTTCGCCGCTGACGTTTGTGTATGCCC TGGCGTCCTTTCGTATGGTCCGCGGCAGCTACGGCGCTTGGGTGGACGTC AACGCAGAGCGAGATGGGCTGCTCCACGTGCGGGACATGTCTAAGACCTT CACGCCAAACGCCGAGCAGGTCGTCGCCACGAGAGACAGTGTGCGGGTTA GGGTAAAGTTCGTCGACCCGGGAGCCGGGAAGCTCGGCCTCTCTCTCGTG GAG
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Coding sequence (CDS) from alignment at H-elongata_contig105208:1453..1955+

>mRNA_H-elongata_contig105208.431.1 ID=mRNA_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig105208:1453..1955+ (Himanthalia elongata Himel1 dioecious)
CGGACATTGGAAGAGCTTCAAGTCGGGGAATGGATCGAGGGCAAAGTTCG
CAACGTGGAAAACGGACATTGGAAGAGCTTCAAGTCGGGGAATGGATCGA
GGGCAAAGTTCGCAACGTGGAAAACTACGGCGCTTGGGTGGACGTCAACG
CAGAGCGAGATGGGCTGCTCCACGTGCGGGACATGTCTAAGACCTTCACG
CCAAACGCCGAGCAGGTCGTCGCCACGAGAGACAGTGTGCGGGTTAGGGT
AAAGTTCGTCGACCCGGGAGCCGGGAAGCTCGGCCTCTCTCTCGTGGAGC
TACGGCGCTTGGGTGGACGTCAACGCAGAGCGAGATGGGCTGCTCCACGT
GCGGGACATGTCTAAGACCTTCACGCCAAACGCCGAGCAGGTCGTCGCCA
CGAGAGACAGTGTGCGGGTTAGGGTAAAGTTCGTCGACCCGGGAGCCGGG
AAGCTCGGCCTCTCTCTCGTGGAG
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