mRNA_H-elongata_contig16938.4306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16938.4306.1
Unique NamemRNA_H-elongata_contig16938.4306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.410e-33
Identity = 63/138 (45.65%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   13 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            W  M+E VT+ V QCLHC DS AG  VPR LGE ++GT  GEV+H D+L +G          D ++G+ Y+LV++DD+S+ V L+P  +CT+ ++A+ +L W  +LG PEV+VSD A HFKN  +  + T LG    F
Sbjct: 1323 WFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNF 1460          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.740e-25
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGA 333
            M+E VT+ V  CL+C DS AG  VP+ LGE  +GT  GEV+  D+L +G          D +DG+ Y+LV++DD+S+ V L+P  +CT+ ++++ +L W   LG PEV+VSD A
Sbjct:    1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 100 bits (250), Expect = 3.500e-22
Identity = 49/128 (38.28%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   13 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            W  + +DV  LV  C HC  +  G VVPR LG  ++G    EV+H+DFL +G       Y+L+L DD+SS + L P    T+  +A ++  W+ V G  E  VSD   HFKN  +K +  +L   H F
Sbjct:  316 WSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHF 443          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.610e-22
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    4 QVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            Q +W+GM +D+   V  CLHCA S  G   PR LGE ++     E++H D+L +GDS+    YVLV+ DD SS+     A S T  +    +++W +  G    +VSD   HFKN+T++ +   +GA H F
Sbjct:  184 QSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDCYVLVIKDDASSLSGCSHAKSRTPTLYFG-LMDWFTSFGVCRTWVSDQGTHFKNKTIESLQHAMGAHHHF 313          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4X9C5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9C5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.010e-20
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            +K+ + + + QCL C       ++PR  G +L  TE  EV+H DFL LGDS    AY+LV+ D +S    L P A+ T+ V+A  ++ W ++ GTP+  +SD   HF+NE +  +AT+L    +F
Sbjct:  107 LKDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHAIFGTPKTLMSDQGSHFRNEMINHLATRLKIEQKF 231          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A329RCS9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCS9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.250e-18
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            M++ V   V  CL C       ++PR  G +L  TE  EV+H +FL LGD     AY+LV+ D +S    L P ++ T+ V++ ++L W +  GTP++ +SD   HF+NET+  +AT+L    RF
Sbjct:  213 MEDKVARFVRTCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWEFLFLGDGYGNSAYLLVVKDGLSHFCELFPCSTPTAYVASEALLMWHARYGTPKMLLSDQGSHFRNETMAHLATRLKIELRF 337          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-17
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASH 390
            + E +   +  CL C     G ++ R  G     T   + LH D+L +G++  G  YVLVL DD++  V L    S TS+V+  +I++W ++ G PEV++SDG  HFKN  +K +A +L   H
Sbjct:  994 LDEKLAAFLRSCLLCPHIRGGKIIQRPHGNTWSATRRNQGLHFDYLFMGETWKGSKYVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRLKVQH 1116          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.590e-17
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            +++ + + + QCL C       ++PR  G +   TE  EVLH DFL LGDS    AY+LVL D +S    L P A+ T+ V+A  ++ W +  GT +  +SD   HF+NE +  +A +L    +F
Sbjct:  917 LEDKIAQFIRQCLLCKHFKGARLIPRPYGPLFTPTERNEVLHWDFLSLGDSYGDSAYLLVLKDGLSHYYELFPCATPTAYVAAEVLMMWDARFGTSKTLMSDQGSHFRNEMINQLAARLKIEPKF 1041          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.310e-17
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            +++ + + + QCL C       ++PR  G +L  T+  EV+H DFL LGDS    AY+LV+ D +S    L P A+ T+ V+A  ++ W +  GTP+  +SD   HF+NE +  +A +L    +F
Sbjct:  263 LEDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTKRNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHARFGTPKTLMSDQGSHFRNEMINHLAARLKIEPKF 387          
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.620e-17
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
            +++ V + V QCL C       ++PR  G +L  TE  EV+H DFL LG+     AY+LV+ D +S    L P A+    V+A ++L W +  G P+  +SD   HF+NE ++ +A++L     F
Sbjct:   87 LEDKVAKFVRQCLLCKHVKGSRLIPRPYGPLLTPTERNEVVHWDFLSLGEGYGDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNF 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE8.410e-3345.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9M0_9PHAE1.740e-2543.86Integrase catalytic domain-containing protein n=1 ... [more]
R7Q542_CHOCR3.500e-2238.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A225UPK1_9STRA7.610e-2238.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4X9C5_9STRA1.010e-2037.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A329RCS9_9STRA8.250e-1837.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4YXI7_9STRA1.910e-1735.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2P4Y8M4_9STRA2.590e-1736.00Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225VA87_9STRA3.310e-1735.20Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3JAA2_9STRA7.620e-1735.20Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16938contigH-elongata_contig16938:1792..2187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue2.7e-19
Seed eggNOG ortholog4792.ETI57041
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.382275-CDS-H-elongata_contig16938:1791..21871622929988.382275-CDS-H-elongata_contig16938:1791..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16938 1792..2187 +
1691679236.288112-CDS-H-elongata_contig16938:1791..21871691679236.288112-CDS-H-elongata_contig16938:1791..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16938 1792..2187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16938.4306.1prot_H-elongata_contig16938.4306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16938 1792..2187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16938.4306.1

>prot_H-elongata_contig16938.4306.1 ID=prot_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MQVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHL
DFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVL
GTPEVFVSDGAPHFKNETLKLVATKLGASHRF
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mRNA from alignment at H-elongata_contig16938:1792..2187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16938.4306.1 ID=mRNA_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig16938:1792..2187+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGATATGGGAAGGTATGAAGGAGGATGTGACCGAGCTTGTTCC ACAGTGTCTACACTGTGCGGACTCCGGGGCGGGGAATGTGGTCCCCCGTC GGTTGGGTGAAATACTTTATGGGACGGAGGTCGGAGAAGTTCTTCACTTG GACTTTCTTAAATTGGGCGACAGTGACGATGGGTATGCGTACGTGCTCGT ACTTGTTGATGACGTGAGCTCGATCGTGTCTTTGCAACCGGCGGCGTCTT GCACAAGTGAAGTTTCTGCAAGAAGTATTCTGGAGTGGGTGTCAGTATTG GGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAATGA GACGCTGAAGTTGGTTGCTACGAAACTGGGAGCCTCGCATCGTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig16938:1792..2187+

>mRNA_H-elongata_contig16938.4306.1 ID=mRNA_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig16938:1792..2187+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGATATGGGAAGGTATGAAGGAGGATGTGACCGAGCTTGTTCC
ACAGTGTCTACACTGTGCGGACTCCGGGGCGGGGAATGTGGTCCCCCGTC
GGTTGGGTGAAATACTTTATGGGACGGAGGTCGGAGAAGTTCTTCACTTG
GACTTTCTTAAATTGGGCGACAGTGACGATGGGTATGCGTACGTGCTCGT
ACTTGTTGATGACGTGAGCTCGATCGTGTCTTTGCAACCGGCGGCGTCTT
GCACAAGTGAAGTTTCTGCAAGAAGTATTCTGGAGTGGGTGTCAGTATTG
GGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAATGA
GACGCTGAAGTTGGTTGCTACGAAACTGGGAGCCTCGCATCGTTTTATGC
AGGTGATATGGGAAGGTATGAAGGAGGATGTGACCGAGCTTGTTCCACAG
TGTCTACACTGTGCGGACTCCGGGGCGGGGAATGTGGTCCCCCGTCGGTT
GGGTGAAATACTTTATGGGACGGAGGTCGGAGAAGTTCTTCACTTGGACT
TTCTTAAATTGGGCGACAGTGACGATGGGTATGCGTACGTGCTCGTACTT
GTTGATGACGTGAGCTCGATCGTGTCTTTGCAACCGGCGGCGTCTTGCAC
AAGTGAAGTTTCTGCAAGAAGTATTCTGGAGTGGGTGTCAGTATTGGGCA
CTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAATGAGACG
CTGAAGTTGGTTGCTACGAAACTGGGAGCCTCGCATCGTTTT
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