mRNA_H-elongata_contig169266.4303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169266.4303.1
Unique NamemRNA_H-elongata_contig169266.4303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.380e-38
Identity = 91/234 (38.89%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   13 HQVLGHPAEQITRNTVRMAGVQLSG-IWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPE-GLKIGVIRTDGGGDWHGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPF 693
            H   GH  E++ + T +  GVQL+G    PC+ CS S+ +   +  ST+ RA  +  RLF++  G     S+  N + ++  DD TR+  V FLK KSDA  A    ++DY A     ++ V RTDGGG++ GQF       GIK+E TPP TP YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N + +       SP EL++G  P   +  PF
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 5.500e-38
Identity = 88/248 (35.48%), Postives = 127/248 (51.21%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            I + H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F D  G     S+    + ++  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG + G  F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:   34 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCR 279          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.150e-37
Identity = 83/230 (36.09%), Postives = 128/230 (55.65%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 660
            + + H +  H  E + R T +  G++L+G    C  CS S+  +  + + T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA +A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N +   +     SPYE+W+G
Sbjct:  572 VNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHG 800          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.600e-37
Identity = 90/249 (36.14%), Postives = 129/249 (51.81%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFA---PEGLKIGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            I + H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK +SDA  A R  ++   A   P  ++I  +R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  254 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 499          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.950e-37
Identity = 89/248 (35.89%), Postives = 130/248 (52.42%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            I + H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  187 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 432          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.010e-37
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 1
Query:   13 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 660
            H + GH  E + R T +  G++L+G    C  CS  +  R A+ + T N +D++  R+F++  G     S+    + M+  DDFTR   + FL+ KSDA +A R  +++  A +G+   I ++R+D GG++ G +F S   EL IK+E TP ++P +NGV ER LGL+ +  +A       L   V   K+DRLWAEAM +AC+  N +   +     SPYE+WYG
Sbjct:  397 HNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 621          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.370e-36
Identity = 88/248 (35.48%), Postives = 129/248 (52.02%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            I + H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +      PYE+WYG  P      PF    Y R
Sbjct:  132 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCR 377          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.500e-36
Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            + + H +  H  + + R T +  G +L G    C  CS ++  +  +   T++R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA  A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  666 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 911          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.520e-36
Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query:    1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            + + H +  H  + + R T +  G +L G    C  CS ++  +  +   T++R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA  A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  373 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 618          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.090e-34
Identity = 86/243 (35.39%), Postives = 129/243 (53.09%), Query Frame = 1
Query:   13 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK-IGVIRTDGGGDW-HGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
            H   GH  E + R T +  G  L G  + C+ CS ++     +PN T  RA ++ QR F++ SG     SL    + ++  DD+TR+  V FLK KSDA  A    + +  A      + V+R+D GG++  G+F     +  IK+E TP ++P YNGV ERALGL++D  +A       L  G    +S  LWAEA+A++C+  N +++ S     SPYE+W+G  P     PP  T  +L+
Sbjct:  312 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLK 547          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE3.380e-3838.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE5.500e-3835.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE2.150e-3736.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE4.600e-3736.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE5.950e-3735.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE6.010e-3736.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE1.370e-3635.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.500e-3634.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.520e-3634.68Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N9_9PHAE1.090e-3435.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169266contigH-elongata_contig169266:314..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score120.9
Seed ortholog evalue7.8e-25
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size711
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.137365-UTR-H-elongata_contig169266:313..3161622929988.137365-UTR-H-elongata_contig169266:313..316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169266 314..316 +
1691679236.1889155-UTR-H-elongata_contig169266:313..3161691679236.1889155-UTR-H-elongata_contig169266:313..316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169266 314..316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.150618-CDS-H-elongata_contig169266:316..10271622929988.150618-CDS-H-elongata_contig169266:316..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169266 317..1027 +
1691679236.2017412-CDS-H-elongata_contig169266:316..10271691679236.2017412-CDS-H-elongata_contig169266:316..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169266 317..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169266.4303.1prot_H-elongata_contig169266.4303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169266 317..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169266.4303.1

>prot_H-elongata_contig169266.4303.1 ID=prot_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNST
ENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKS
DATNALRDIISDYFAPEGLKIGVIRTDGGGDWHGQFLSFLGELGIKREST
PPYTPLYNGVVERALGLLRDKTVALLRGVMEGKSDRLWAEAMAYACDIWN
RSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR
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mRNA from alignment at H-elongata_contig169266:314..1027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169266.4303.1 ID=mRNA_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at H-elongata_contig169266:314..1027+ (Himanthalia elongata Himel1 dioecious)
ATCATGAAGGTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCG CAACACGGTTCGTATGGCGGGCGTGCAATTAAGCGGAATTTGGCAACCAT GCGTACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAACTCC ACGGAGAATCGGGCTGACAGGCGCGCGCAACGGCTGTTTATTGATTTCTC AGGTCCCTTTCACGAGACGTCTCTCAGAGAAAACAGATTCGTTATGCTGT GCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCAAGCAGAAG AGCGATGCCACGAATGCGTTAAGGGACATAATCAGCGACTACTTCGCGCC CGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGACTGGC ACGGCCAGTTCCTGTCTTTTCTGGGTGAGCTCGGAATCAAGCGCGAGTCC ACACCCCCATATACCCCCCTATACAATGGCGTCGTGGAGCGCGCTCTGGG GCTACTGCGCGACAAGACTGTGGCCCTGCTGCGAGGTGTAATGGAGGGTA AGAGCGACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATATGG AACCGATCCACCTCCGTTTCCCTCGACAGCGGCACCTCGCCATATGAGCT TTGGTACGGCCGACGTCCGACATTCAACAACATCCCCCCGTTTGGGACCG TGGGATATCTACGA
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Coding sequence (CDS) from alignment at H-elongata_contig169266:314..1027+

>mRNA_H-elongata_contig169266.4303.1 ID=mRNA_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig169266:314..1027+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCGCAA
CACGGTTCGTATGGCGGGCGTGCAATTAAGCGGAATTTGGCAACCATGCG
TACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAACTCCACG
GAGAATCGGGCTGACAGGCGCGCGCAACGGCTGTTTATTGATTTCTCAGG
TCCCTTTCACGAGACGTCTCTCAGAGAAAACAGATTCGTTATGCTGTGCA
TTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCAAGCAGAAGAGC
GATGCCACGAATGCGTTAAGGGACATAATCAGCGACTACTTCGCGCCCGA
GGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGACTGGCACG
GCCAGTTCCTGTCTTTTCTGGGTGAGCTCGGAATCAAGCGCGAGTCCACA
CCCCCATATACCCCCCTATACAATGGCGTCGTGGAGCGCGCTCTGGGGCT
ACTGCGCGACAAGACTGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGA
GCGACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATATGGAAC
CGATCCACCTCCGTTTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTG
GTACGGCCGACGTCCGACATTCAACAACATCCCCCCGTTTGGGACCGTGG
GATATCTACGAATGAAGGTCCACCAGGTGCTGGGGCACCCGGCAGAGCAG
ATCACGCGCAACACGGTTCGTATGGCGGGCGTGCAATTAAGCGGAATTTG
GCAACCATGCGTACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGC
CTAACTCCACGGAGAATCGGGCTGACAGGCGCGCGCAACGGCTGTTTATT
GATTTCTCAGGTCCCTTTCACGAGACGTCTCTCAGAGAAAACAGATTCGT
TATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCA
AGCAGAAGAGCGATGCCACGAATGCGTTAAGGGACATAATCAGCGACTAC
TTCGCGCCCGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGG
AGACTGGCACGGCCAGTTCCTGTCTTTTCTGGGTGAGCTCGGAATCAAGC
GCGAGTCCACACCCCCATATACCCCCCTATACAATGGCGTCGTGGAGCGC
GCTCTGGGGCTACTGCGCGACAAGACTGTGGCCCTGCTGCGAGGTGTAAT
GGAGGGTAAGAGCGACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCG
ATATATGGAACCGATCCACCTCCGTTTCCCTCGACAGCGGCACCTCGCCA
TATGAGCTTTGGTACGGCCGACGTCCGACATTCAACAACATCCCCCCGTT
TGGGACCGTGGGATATCTACGA
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