prot_H-elongata_contig16904.4293.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16904.4293.1
Unique Nameprot_H-elongata_contig16904.4293.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length322
Homology
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 1.210e-138
Identity = 240/335 (71.64%), Postives = 267/335 (79.70%), Query Frame = 0
Query:    1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEA---------------GKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRK 320
            R LS+AVLERFETAVLDMDEPGIAAACPLLAPLGLAT+GQELYLGFAR+ALEA+L AG GD   PATQ LP IYN +AAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAA VLEKHLRE +VA+WAA GV                +   AAA A+VLG+ADALL+ELA+LTQHTESYDRFV+FLV EVE AHPS+EE  +  A               G    + S +PAPILEP+MPARTRLQEAGAEVA+YYSQIEGQL+ ASV+KAIA+DE++ G+ A SCAEDAFFVAQRCAKR LATGHAGAASAVVNH  N LG +LL+ALVRK
Sbjct:  220 RGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGV----------------EGAAAAAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEVEGAHPSQEEFEATRAPTNGEDGESKTGGGGGAAAERPSVLPAPILEPVMPARTRLQEAGAEVAVYYSQIEGQLLEASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 538          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.270e-37
Identity = 127/370 (34.32%), Postives = 179/370 (48.38%), Query Frame = 0
Query:    2 RLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVS-PATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVA------AWAARGV-----ASWPEVSSGGGSGSGEDAEGAAAT-AKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDE---------ISAGST----------------------------ACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRKV 321
            RL   VL R   AV   +   +   CPLL PLGLA +G  +Y  FA + L+  L+  + +    PA Q LP+IYN AA FL+R +P+ + G      DV+L+R+V REC D A  V+ + L +K VA      A A+RG       ++     GG    G  A G     A  +G+ D L+D LA++ QHTESYDRF+R +  EV             E G+  G           P++P  T L  A AEVA  ++ +E  +M ASVAKA+ +DE         + AG++                              S  +D+F+V +RCA+R L TGHAG ASA++N+    L + L+  L  KV
Sbjct:  236 RLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDGLDGGAFHARKEGGHRRRGAQASGGEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEV------------LETGRDLGA----------PVLPVVTDLNGAVAEVAGPFALLEDYVMRASVAKALQIDELPALAPLSLVQAGTSLVASGAGIASIGEGDDLLLSTGRGDSPLTSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKV 583          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.610e-22
Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    8 LERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQAL-----EADLNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNV 126
            L RFE AV      GI A CPLL PLGLA   +  ++ FAR  L     E D  A  G   +PAT  L  +YN  AAFL++QVP+AA+GLA   GDV L+R+V  ECG RAAAV+++HLRE+ V
Sbjct:  197 LSRFEAAVRADSRDGIVAGCPLLGPLGLAAAAKGPFMEFARGLLGSTLAELDAAAPAG---APATHALSALYNSCAAFLQQQVPLAASGLAASCGDVDLLRMVHDECGARAAAVMQRHLRERKV 317          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.040e-20
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 0
Query:  160 KVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISA--GSTACSCAEDAFFVAQ 283
            K L + DA LDELA++ QHTESYDRF+R LVE VE++HP   + +       R KS + PA I  P++P RT+L+EA  EV+  Y+++E  L   S+ KA+A+DE+    G    SC EDAFFVAQ
Sbjct:    4 KQLAELDAALDELALMLQHTESYDRFLRHLVEGVEASHPKAGDDLH------REKSPSTPAIIDGPVLPERTKLEEAAGEVSALYAELEAGLFRCSLRKALAIDEVHGHGGLVTSSCVEDAFFVAQ 123          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: B7FZH3_PHATC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZH3_PHATC)

HSP 1 Score: 76.3 bits (186), Expect = 1.350e-11
Identity = 95/354 (26.84%), Postives = 155/354 (43.79%), Query Frame = 0
Query:    7 VLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVS------------PATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAA---WAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLG---------QADALLDELAILTQHTESYDRFVRFLVEEVESAHPSE-EEAISAEAGKVRGKSSAVPAPILEPI--MPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDE----------ISAGST--------------ACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANIL 309
            +L+ +E AV   D   +    P+L+ L L ++   LYL F +  L++ +   +    S            P    + ++YN A   LR  +P+ ++ L    GDVA+V++V  +  +    +LE+  + +++A+    A R  A   E  +G    +  DA  AAA A   G           DA + E+A   QH ESY RFV+   ++V+ A     E++ S E      ++   P  ++E I  +P RT L  A AEV   Y+ IE  L+ AS+ +A    E          +++G T                +  E   +  +R  +R  ATGH G ASA+ N   + L
Sbjct:  214 LLQNYEHAVQQGDLQALGKYTPILSSLQLESEAVRLYLQFLKSLLQSSIRQALDPTHSQSQNSNGPSNTVPPYVPMAKVYNAAVHVLRHHLPMVSSYLYKAQGDVAVVQLVHVQVEETVLPMLERFQKSRDLASVSTQAQRIAADLEERYTGR---TAVDAHDAAAEADDAGFGALVGSLTDVDATMQEVATCLQHVESYLRFVQHTCDQVQKARTMRHEQSFSRE-----WENDGTPVDLMETIEILPTRTNLHLALAEVGGQYASIERCLLMASMQRAFHASEDDPRYYRPLGMASGGTNHGNGNSSFPSKALQTALVETCLYATRRGTQRAFATGHTGTASAMTNFGVDCL 559          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S3CAS4_9CHLO (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAS4_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 2.370e-10
Identity = 86/332 (25.90%), Postives = 142/332 (42.77%), Query Frame = 0
Query:    1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELY----LGFARQALEADLNAGIGDEVSPAT----------QCLPEIY-NVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQAL 317
            R L   VLE+FE A  + D   +     +L P+GL   G   +    +G       AD +  + +   P            +CL  ++ +VA A    +  +A A  A   G V ++  +  EC  RA  +L KH+  + +A  A           +G G  +G  A G   +A  +   +  +DE+ +L    E Y+     LV+ ++ A  S   A  ++   +             P  P    ++E  A    YY+ +E   M  ++A A+ +DE   GS   S  EDAFF+ Q+C++RG+ATG+     +V+++  N L    L AL
Sbjct:  194 RSLREIVLEKFERAARERDHEQVKRFAAILGPIGLVESGLAAFTKYLVGLVSSRATADYDELLSEISVPRGASSEGRVDFHKCLTNLFRDVAEAVEANRDLIAEAYGAD--GFVGVLAALHGECEQRATQILRKHIEFRQLARLA---------EDAGAGDNNGAGAGGEGGSASRVKDFERTVDEVVMLCVRCEEYNSL---LVDVLDQARASGSSAAESKIASL-------------PSSPLNCCVRELNA----YYTSLEDAYMARTIAMAVEMDECVEGSMTSSLVEDAFFLLQKCSRRGMATGNVQCVCSVLSNVNNHLCNAYLAAL 494          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S2UY20_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY20_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.460e-7
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:  166 DALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEI 265
            DALLDE+A++ QHTESYDRF+R  V++VE+                              ++P  T +  + AE++ YYSQ+E +LM  SV KA+ +D++
Sbjct:    2 DALLDEVALVIQHTESYDRFLRHAVDQVEALPLXXXXXXXXXXXXXXXXXQ---------VIPRATEMNASVAEISAYYSQLEHRLMVLSVRKALYIDQV 92          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: I2CPS3_NANGC (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPS3_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 9.390e-7
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  166 DALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISA 267
            D L+D LA++ QHTESYDRF+R +  EV             E G+  G           P++PA T L  A AEVA  ++ +E  +M AS+AKA+ +DE+ A
Sbjct:    2 DGLMDALALVIQHTESYDRFLRHVAAEV------------LETGRDLGA----------PVLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPA 81          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A5B8MRN3_9CHLO (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRN3_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.430e-6
Identity = 82/331 (24.77%), Postives = 135/331 (40.79%), Query Frame = 0
Query:    1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGF------ARQALEAD-LNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAG----LAPCLGDVALVRVVT---RECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQAL 317
            + L   VLE+FE A  + D   +     +L P+GL   G + +  +      +R   E D L A I    +  ++   + +N A   L R +  A       +    G    V VV    +E   RA  +L K +  + +A    R + S  EV S GG                +   +  +DE+ +L   +E Y+  ++ ++    +A     E  S+    + G              P    ++E  A    YY+ +E   M  ++  AI +DE   G+   S  EDAFF+ Q+C +RG+ATG+     +V+N+  N L    L AL
Sbjct:  222 KNLREVVLEKFEKAAKERDHDQVKRFASILGPIGLVESGLQAFTKYLIGLISSRATSEYDNLLAEISIPKNLESERKAD-FNAALTGLYRDIAEAIEANTQLITEAYGQEGFVDVVLSLHQEAETRAVQILRKFVEYRQLA----RAIESKGEVGSSGGDN--------------VTSFERTIDEVVMLCMRSEEYNNCIKMVLS---TAAEQGVEKASSTINSLGGS-------------PLNCVVRELNA----YYTGLEDNYMERTIQMAIQMDECVDGALTSSLVEDAFFILQKCGRRGMATGNVQCVCSVLNNINNHLCNAFLSAL 513          
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.370e-6
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0
Query:  277 DAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRKV 321
            D F+VAQRCAKR +ATGH G+ SAV+NH  N L  +LLQ L  K+
Sbjct:    2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKL 46          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.210e-13871.64Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA1.270e-3734.32Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836CCD6_9STRA3.610e-2250.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9B0_9STRA1.040e-2048.41Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
B7FZH3_PHATC1.350e-1126.84Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A7S3CAS4_9CHLO2.370e-1025.90Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A7S2UY20_9STRA5.460e-736.00Conserved oligomeric Golgi complex subunit 4 (Frag... [more]
I2CPS3_NANGC9.390e-739.22Conserved oligomeric Golgi complex subunit 4 (Frag... [more]
A0A5B8MRN3_9CHLO3.430e-624.77Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2V6Z6_9STRA6.370e-660.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013167Conserved oligomeric Golgi complex, subunit 4SMARTSM00762cog4.2seq4coord: 1..320
e-value: 4.0E-4
score: -49.7
IPR013167Conserved oligomeric Golgi complex, subunit 4PFAMPF08318COG4coord: 2..320
e-value: 1.1E-24
score: 87.1
NoneNo IPR availablePANTHERPTHR24016FAMILY NOT NAMEDcoord: 2..321
NoneNo IPR availablePANTHERPTHR24016:SF0CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4coord: 2..321

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16904contigH-elongata_contig16904:4353..6788 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16904.4293.1mRNA_H-elongata_contig16904.4293.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16904 4353..6788 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16904.4293.1 ID=prot_H-elongata_contig16904.4293.1|Name=mRNA_H-elongata_contig16904.4293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=322bp
RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQA
LEADLNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVA
LVRVVTRECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGE
DAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSE
EEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQ
LMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASA
VVNHAANILGENLLQALVRKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013167COG_su4