mRNA_H-elongata_contig169029.4292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169029.4292.1
Unique NamemRNA_H-elongata_contig169029.4292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169029.4292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169029contigH-elongata_contig169029:873..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.2244601-CDS-H-elongata_contig169029:872..13431622929987.2244601-CDS-H-elongata_contig169029:872..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169029 873..1343 +
1691679235.776312-CDS-H-elongata_contig169029:872..13431691679235.776312-CDS-H-elongata_contig169029:872..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169029 873..1343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169029.4292.1prot_H-elongata_contig169029.4292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169029 873..1343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169029.4292.1

>prot_H-elongata_contig169029.4292.1 ID=prot_H-elongata_contig169029.4292.1|Name=mRNA_H-elongata_contig169029.4292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
LKHGLRSIQSSSSPAQAPFSGDESMTLLPLRRASPDCIGAEHAIWHGGQF
VHLPQPQQPQTPQHHKQHLRMPTSTLRLQQHRSLPATPAPPEIPPPLAPT
GAWGQTGPGGLAQRLQGGVASENTHASGQAAVQVQAQAPAQHVQGVAGMG
GMRGCCS
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mRNA from alignment at H-elongata_contig169029:873..1344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169029.4292.1 ID=mRNA_H-elongata_contig169029.4292.1|Name=mRNA_H-elongata_contig169029.4292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=472bp|location=Sequence derived from alignment at H-elongata_contig169029:873..1344+ (Himanthalia elongata Himel1 dioecious)
CTGAAGCACGGACTGAGGAGCATCCAATCGTCGAGCTCCCCAGCGCAAGC
GCCTTTCTCCGGAGACGAAAGCATGACGCTCCTTCCCCTTCGCAGAGCCT
CACCCGACTGCATCGGAGCGGAGCACGCCATTTGGCACGGTGGTCAATTT
GTACATCTGCCGCAGCCGCAGCAGCCTCAGACACCCCAGCATCATAAACA
GCACCTTCGGATGCCGACTTCTACGCTACGCTTGCAGCAGCACCGCTCCC
TCCCAGCCACGCCTGCGCCGCCTGAGATCCCTCCCCCACTCGCCCCCACC
GGGGCCTGGGGTCAGACCGGCCCGGGTGGTCTCGCTCAGAGGCTACAGGG
GGGTGTTGCGTCAGAGAACACTCATGCTTCTGGTCAGGCGGCGGTGCAGG
TGCAGGCACAGGCGCCAGCGCAGCATGTCCAGGGTGTGGCCGGGATGGGA
GGGATGAGGGGCTGCTGCAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig169029:873..1344+

>mRNA_H-elongata_contig169029.4292.1 ID=mRNA_H-elongata_contig169029.4292.1|Name=mRNA_H-elongata_contig169029.4292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig169029:873..1344+ (Himanthalia elongata Himel1 dioecious)
CTGAAGCACGGACTGAGGAGCATCCAATCGTCGAGCTCCCCAGCGCAAGC
GCCTTTCTCCGGAGACGAAAGCATGACGCTCCTTCCCCTTCGCAGAGCCT
CACCCGACTGCATCGGAGCGGAGCACGCCATTTGGCACGGTGGTCAATTT
GTACATCTGCCGCAGCCGCAGCAGCCTCAGACACCCCAGCATCATAAACA
GCACCTTCGGATGCCGACTTCTACGCTACGCTTGCAGCAGCACCGCTCCC
TCCCAGCCACGCCTGCGCCGCCTGAGATCCCTCCCCCACTCGCCCCCACC
GGGGCCTGGGGTCAGACCGGCCCGGGTGGTCTCGCTCAGAGGCTACAGGG
GGGTGTTGCGTCAGAGAACACTCATGCTTCTGGTCAGGCGGCGGTGCAGG
TGCAGGCACAGGCGCCAGCGCAGCATGTCCAGGGTGTGGCCGGGATGGGA
GGGATGAGGGGCTGCTGCAGCCTGAAGCACGGACTGAGGAGCATCCAATC
GTCGAGCTCCCCAGCGCAAGCGCCTTTCTCCGGAGACGAAAGCATGACGC
TCCTTCCCCTTCGCAGAGCCTCACCCGACTGCATCGGAGCGGAGCACGCC
ATTTGGCACGGTGGTCAATTTGTACATCTGCCGCAGCCGCAGCAGCCTCA
GACACCCCAGCATCATAAACAGCACCTTCGGATGCCGACTTCTACGCTAC
GCTTGCAGCAGCACCGCTCCCTCCCAGCCACGCCTGCGCCGCCTGAGATC
CCTCCCCCACTCGCCCCCACCGGGGCCTGGGGTCAGACCGGCCCGGGTGG
TCTCGCTCAGAGGCTACAGGGGGGTGTTGCGTCAGAGAACACTCATGCTT
CTGGTCAGGCGGCGGTGCAGGTGCAGGCACAGGCGCCAGCGCAGCATGTC
CAGGGTGTGGCCGGGATGGGAGGGATGAGGGGCTGCTGCAGC
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