mRNA_H-elongata_contig16898.4289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16898.4289.1
Unique NamemRNA_H-elongata_contig16898.4289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: D7FJ29_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ29_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 7.650e-74
Identity = 175/206 (84.95%), Postives = 187/206 (90.78%), Query Frame = 1 
Query:  160 TLARPRTFSSSPEYLRHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQA 777
            T AR  + + SPEYLRHRPVMNLH+ERG+TM + +VAP ASVVGNVRI DHSCVWYGA +RGDKN VKIGAHVHVGDKAVINTVG VDTGFS+EV IESWV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLS+EDV  +EAEAERRS LGE HADEFNP+GQ YVQAE+A
Sbjct:    2 TQARVFSAAPSPEYLRHRPVMNLHEERGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGHVDTGFSAEVAIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEEDVAEIEAEAERRSALGELHADEFNPYGQGYVQAEEA 207
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A7S3GN43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN43_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.150e-28
Identity = 92/204 (45.10%), Postives = 120/204 (58.82%), Query Frame = 1 
Query:  178 TFSSSPEYL----RHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQA 777
            TFS++  Y     RHR VMNL+ +R       +VAPNASVVG+V +FD   +WYGA +RGDKN +K+G   +V D+AVI+TV  ++TGF + V I   V                              XXXXXXXXXXXXXXXXXXXX N+LWAGNPA +VR ++DE+ + ++  AE  + +G  H +EF P G  Y  AE A
Sbjct:   25 TFSNNEIYKETFSRHRAVMNLYDKRPIIAAGGFVAPNASVVGDVLLFDEVSIWYGAVLRGDKNKIKVGRLTNVQDRAVISTVANLNTGFPANVEIGDSVTIGHGALITSATIGNRVLVGQGSIIQEGAEXXXXXXXXXXXXXXXXXXXXSNQLWAGNPAVYVRDVTDEESVGIKKSAEHYAEVGRTHGEEFLPFGTTYQAAEAA 228
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A5A8CT95_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CT95_CAFRO)

HSP 1 Score: 116 bits (290), Expect = 1.860e-26
Identity = 85/191 (44.50%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:  199 YLRHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAE 771
            + RHRPVMNL  +   T PS++VAPNA+VVGNV I   S VWYGA VRGD+  V+IG + ++ D+AV+ T   V+   S    I S V                            XXXXXXXXXXXXXXX         +LWAGNPA+FVR L+ E++ A+E +AE  S L E+HA EF P    ++ AE
Sbjct:   37 FARHRPVMNLFDKHPVTDPSVFVAPNATVVGNVTIAHKSNVWYGAVVRGDQARVEIGGYTNIQDRAVVTTAKEVEGQSSGVTKIGSHVTVCPGAVLRSCVVEGHNRIGAGAVVNDGXXXXXXXXXXXXXXXHPGRRIPGGQLWAGNPAEFVRNLTKEEMAALEIDAEAASSLAEEHAAEFLPTSAVHLDAE 227
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: R1DUX3_EMIHU (Gamma carbonic anhydrase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUX3_EMIHU)

HSP 1 Score: 115 bits (287), Expect = 5.580e-26
Identity = 93/198 (46.97%), Postives = 120/198 (60.61%), Query Frame = 1 
Query:  205 RHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQA*TKMHVI 798
            RHR +MNL  +R    PS++VAPNAS++GNV + D S +WYGA VRGD++ V IG    +GD++V+ +     TGF+++  I  WV                       XXXXXXXXXXXXXXXXXXXXXXXXXXX  E+  GNPA FVRKL  +++ A+E +AE  S+  +KHADEF  +   Y   EQ  T    I
Sbjct:   38 RHRALMNLFDQRPKLRPSVFVAPNASLIGNVSVMDESSIWYGAVVRGDQSPVDIGGKSSIGDRSVVLSASVNPTGFAAKTSIGDWVTVGQGCVLRGCTVDNFAVVGDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVHGGNPAAFVRKLEKDEIAAIEKKAEDVSMSAKKHADEFLAYSNTYQLREQLGTAAGKI 235
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A7S3AQF6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AQF6_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.840e-24
Identity = 92/190 (48.42%), Postives = 116/190 (61.05%), Query Frame = 1 
Query:  205 RHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQ 774
            RHR +MNL  +R      +++APNA++VGNV + D S VWYGA +RGD++ V IG + ++GD+ VI +     TGFS+   I  +V                       XXXXXXXXXXXXXXXXXXXXXXXXXXX  E+W G+PA F+RKLS E+V   E  AE  S LG KHADEF  +   Y  AE+
Sbjct:   50 RHRALMNLFDQRPKIGGRVFIAPNATIVGNVDVKDESSVWYGAVIRGDQSNVYIGGYTNIGDRTVIQSAAINPTGFSARTYIGDFVTVGQGCILRACTVDDKSVIGDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVWGGSPAAFIRKLSKEEVTEHEQGAEATSALGAKHADEFLHYSTTYQLAEE 239
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A835YZE2_9STRA (Trimeric LpxA-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.420e-24
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 1 
Query:  205 RHRPVMNLHQERGYT-MPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAE 771
            RHRP+M L+ +       + +VAPNASVVG+V + D + +WYGA +RGDK+++ +G    VGDK VINTV ++ TGF ++V+I ++V                                        XXX         ++W GNPA++V  +  + V   + EAER+ LL E+H +EFNP   A+  AE
Sbjct:   46 RHRPLMILNGKAPRKDFENCFVAPNASVVGDVDLVDMTTIWYGAVLRGDKSSIHVGGLSSVGDKTVINTVAKLSTGFPAKVVIGNYVVIEEGCSLTSCMVGDQCNIGRGSVVCEGAIMEKQSILLPGXXXTTGSLVPSRQIWGGNPAQYVGDVDSDSVANFKDEAERQFLLSEEHVNEFNPANMAFTHAE 235
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A7S0JJW9_9EUKA (Hypothetical protein n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0JJW9_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 7.970e-24
Identity = 90/195 (46.15%), Postives = 111/195 (56.92%), Query Frame = 1 
Query:  190 SPEYLRHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQ 774
            S  + RHR VMN+  +R    PS +VAPNASV+GNV +   S +WYGA VRGD++ + IG    +GD+ V+ +     TGFS+   I  WV                           XXXXXXXXXXXXXXXXXXXXXXX  E++AGNPA FVRKLS E++   E  A+    L  KHADEF  +  AY   EQ
Sbjct:   54 SEPFCRHRAVMNVFDQRPLLAPSAFVAPNASVIGNVEVKCQSSIWYGAVVRGDQSNIFIGGCSSIGDRTVVQSSTVNPTGFSARTYIGDWVTIGQGCVLRACTVDNFSKVGDGCIIQEXXXXXXXXXXXXXXXXXXXXXXXXXEVYAGNPAVFVRKLSKEEIAEFEVSADAVVSLAAKHADEFLDYSDAYQLREQ 248
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A7S1CBV1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBV1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.450e-23
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 1 
Query:  199 YLRHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYV 762
            + RHRPV NL+++      +++VAP+A+V+G+V+I   S VWYGA VRGD NAV+IG +  +GD+AV++T   V+   ++   I  +V                               XXXXXXXXXXXXXX       +LWAGNPA+FVR L+ E++   E +AE  + LG +HA EF P G AY 
Sbjct:   56 FARHRPVQNLYEKHPEVENNVFVAPSATVIGHVQILHKSSVWYGAVVRGDVNAVEIGGYSSIGDRAVVSTTKSVEGRPAATCRIGDYVTVGPGALLQSCTIENGVKIGAGAVVMEGALVXXXXXXXXXXXXXXGRRIPSGQLWAGNPAQFVRNLTKEELATFEGDAEFVADLGGEHAHEFLPAGGAYT 243
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: K3WLJ5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLJ5_GLOUD)

HSP 1 Score: 108 bits (269), Expect = 1.920e-23
Identity = 85/208 (40.87%), Postives = 119/208 (57.21%), Query Frame = 1 
Query:  184 SSSPEYLRHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQA*TKMHVIAGQ 807
            S +  + RHR VMNL+++R      ++VAPNA++VG+V I + + VWY   +RGD N V+IG   ++ D+ VI+T    + G S    I + V                            XXXXXXXXXXXXXXXXXXXXXX  +LWAGNPAK+VR +SD++V  +  +A+    + + H+DEF P+G AY+ AE    K+    GQ
Sbjct:   32 SFNERFSRHRQVMNLYEKRPVIAHDVWVAPNATIVGDVEICNDASVWYNVVIRGDLNQVRIGNRTNIQDRTVIHTASTTNAGLSPGASIGNDVTVGHGCILYSCTIENNSLIGMGSIILDGXXXXXXXXXXXXXXXXXXXXXXSGQLWAGNPAKYVRDISDDEVSDIVKQAKEYKSIADTHSDEFLPYGTAYLDAE----KIKAAGGQ 235
[Close]
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Match: A0A7S0EPL1_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPL1_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 1.270e-21
Identity = 80/187 (42.78%), Postives = 111/187 (59.36%), Query Frame = 1 
Query:  205 RHRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNAVKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKL--SDEDVLAVEAEAERRSLLGEKHADEFNPHGQAY 759
            RHRP+MNL  +R     +++VAPNA+V+GNV + D + +WYGA VRGD++ ++IG    +GD++ I ++    TGF++   + +WV                        XXXXXXXXXXXXXXXXXXXXXXX   K E++ GNPA FVRK+  +D D    E  A+    L ++H  EF P+G  Y
Sbjct:   56 RHRPLMNLFDQRPLIHDNVFVAPNATVIGNVNVMDSASIWYGAVVRGDQSPIQIGGFTSIGDRSTILSIATNPTGFAARTFVGNWVTVGQNCVLKGCTVDDYAIVGDGSVXXXXXXXXXXXXXXXXXXXXXXXRVPKGEVYGGNPAVFVRKVPKNDMDTGVAEKAADFNVDLAQRHDAEFLPYGTLY 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16898.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ29_ECTSI7.650e-7484.95Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S3GN43_9STRA5.150e-2845.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8CT95_CAFRO1.860e-2644.50Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
R1DUX3_EMIHU5.580e-2646.97Gamma carbonic anhydrase n=1 Tax=Emiliania huxleyi... [more]
A0A7S3AQF6_9EUKA1.840e-2448.42Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835YZE2_9STRA2.420e-2434.74Trimeric LpxA-like protein n=1 Tax=Tribonema minus... [more]
A0A7S0JJW9_9EUKA7.970e-2446.15Hypothetical protein n=2 Tax=Coccolithales TaxID=4... [more]
A0A7S1CBV1_9STRA1.450e-2340.96Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
K3WLJ5_GLOUD1.920e-2340.87Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S0EPL1_9EUKA1.270e-2142.78Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16898contigH-elongata_contig16898:2374..6431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue9e-61
Seed eggNOG ortholog2880.D7FJ29
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2QQV5@2759,COG0663@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-07_004610.1
Exons5
Model size1319
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.8891318-UTR-H-elongata_contig16898:2373..29121622929986.8891318-UTR-H-elongata_contig16898:2373..2912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16898 2374..2912 -
1691679235.6341426-UTR-H-elongata_contig16898:2373..29121691679235.6341426-UTR-H-elongata_contig16898:2373..2912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16898 2374..2912 -
1622929986.9874098-UTR-H-elongata_contig16898:6374..64311622929986.9874098-UTR-H-elongata_contig16898:6374..6431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16898 6375..6431 -
1691679235.7130506-UTR-H-elongata_contig16898:6374..64311691679235.7130506-UTR-H-elongata_contig16898:6374..6431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16898 6375..6431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.9049807-CDS-H-elongata_contig16898:2912..30481622929986.9049807-CDS-H-elongata_contig16898:2912..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 2913..3048 -
1691679235.6438973-CDS-H-elongata_contig16898:2912..30481691679235.6438973-CDS-H-elongata_contig16898:2912..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 2913..3048 -
1622929986.932526-CDS-H-elongata_contig16898:3284..34191622929986.932526-CDS-H-elongata_contig16898:3284..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 3285..3419 -
1691679235.651622-CDS-H-elongata_contig16898:3284..34191691679235.651622-CDS-H-elongata_contig16898:3284..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 3285..3419 -
1622929986.9459612-CDS-H-elongata_contig16898:3751..39171622929986.9459612-CDS-H-elongata_contig16898:3751..3917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 3752..3917 -
1691679235.6590683-CDS-H-elongata_contig16898:3751..39171691679235.6590683-CDS-H-elongata_contig16898:3751..3917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 3752..3917 -
1622929986.962143-CDS-H-elongata_contig16898:4444..45881622929986.962143-CDS-H-elongata_contig16898:4444..4588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 4445..4588 -
1691679235.6717377-CDS-H-elongata_contig16898:4444..45881691679235.6717377-CDS-H-elongata_contig16898:4444..4588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 4445..4588 -
1622929986.974642-CDS-H-elongata_contig16898:6232..63741622929986.974642-CDS-H-elongata_contig16898:6232..6374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 6233..6374 -
1691679235.6908512-CDS-H-elongata_contig16898:6232..63741691679235.6908512-CDS-H-elongata_contig16898:6232..6374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16898 6233..6374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16898.4289.1prot_H-elongata_contig16898.4289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16898 2913..6374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16898.4289.1

>prot_H-elongata_contig16898.4289.1 ID=prot_H-elongata_contig16898.4289.1|Name=mRNA_H-elongata_contig16898.4289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MLTMSARRGGLDAVLRASASAARASRKSPKPSATTLARPRTFSSSPEYLR
HRPVMNLHQERGYTMPSIYVAPNASVVGNVRIFDHSCVWYGATVRGDKNA
VKIGAHVHVGDKAVINTVGRVDTGFSSEVLIESWVVIEPGAVLTSCMIGN
RCHIGAGAVVAEGSVLENGGQIAAGTVVPPGCLVPKNELWAGNPAKFVRK
LSDEDVLAVEAEAERRSLLGEKHADEFNPHGQAYVQAEQA*
back to top

mRNA from alignment at H-elongata_contig16898:2374..6431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16898.4289.1 ID=mRNA_H-elongata_contig16898.4289.1|Name=mRNA_H-elongata_contig16898.4289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4058bp|location=Sequence derived from alignment at H-elongata_contig16898:2374..6431- (Himanthalia elongata Himel1 dioecious)
CAGCAGCGGGAAAAAAACTGTACTTTGAGTTGACCAATTGCAAAAAAACG
GAGCTAAATGCTAACGATGTCAGCGAGGCGAGGAGGCCTGGATGCTGTGT
TACGCGCATCGGCGTCGGCGGCCAGGGCATCCCGAAAGTCCCCCAAGCCC
TCCGCGACTACGCTGGCTCGACCCAGGACGTTTTCTTCTAGCCCCGAATG
TGAGCGTTCGGCGATTGCCAAAGCCTAGTAATATGTACAGCAGTTCCAGA
ATGACCCGTGGCATGCACAGATCTTCGTTTTTCATCTTGATCTTGAGAAA
GGTTTGCCCACAAGTACACGTACACACAGGAAGGGATGCGAAACCTTTTC
TTTGGGATGGTCCCAGCCGATCTGAAAGAGCTTGGCGGCGACTCTTTTTT
CGTAGCTCCCTGTTTAGAGCAAGGAGTGGATGGACCTCTCCGGTGTAACC
TTGACGGGCTCAGTAGCTAGATAGCTGAGGGATGCATAAACTAACTTGCT
CCAAAAGTCCCTTTTAAAAACAAGTTATTTCAACCTCAGCAGTAGCCGGA
AGGATCATACTATTTATACAGTATAGAGGTGCATTGGAGCGCTCGGCACC
CCTGTGTGGTGCTCATGTGGTGCGGTTCGGCGAGTCCCGCAAAATTAGTT
TACTTACGTCTACGGTACCTCTCATTTTGTGTACAGGTTTGTGACCCCAA
ATGATGTGCATGTCCTTCACATCGAGCTTGGAACGCGTCGTTTCTATTAT
AGCATAAGAGGTTGGATGTGTTTTCGAAAGCTTAACAACGAAACTTAGCT
CTTTAATTTCGTAATTTCTGGAAGCCGTGATCGAATCGTATCGCCGTGGT
GGAATCGACATGTCTCTTCCCTTTGTCTGTGTTTTTTCCGAAGTGAATCG
AGAACCTGTGAGTTCGCATCATTCATGAGTGGAAATGAGCCCAGGGCTCT
CGAAATTGGCAGACGGCGTTATTTTATTGTTCACAGCCTTCGTCTGAAGA
TGTTGTTAACGAAATTGGTATAATTTTTTGCGCTTGACGAAGCCCGCACG
CTAGATCATGACATTGACCTGCGCGTGGTAACGTTGGGGTGAGTCCACCC
TACCACCATACCCTGGATTAACATATAAGGACTCCTGCTACGTAGTCAAG
TCTAAGTGGACTTCGTTTTAAAAGTGATTACAGGTGAGTCTTAACAAAAA
CTAAACATGGAGGGGAGATTCGATTAAACACCCGATCACCCCACCGCAAG
GTCACAAGTCCTTAGTCAGCGCCATCATTCGGTTCCGCCACGGACCCGCT
AGAGATTGTATTTGACAAATGTAAGTTACAGCTCTTCCCATTATATTGCC
CATTGATAACCCGGGCGTCGCCTCTCATGGTGCAAAGAAGGTGCGGATGT
TCGCAGGGTTTGAATAAGTTCATATGTTTTTTTAGAAAAACATCTACCAG
ATGAGGTCACAGCGGACTCGAACCCACGGGTAGGGTTCCTCTGCGACGAA
GTCTTTGTGCTGACGATAGGGCGGGAATGATTACATGTTACATCCAACCC
CCCTGCCTTTTTCATGCTGCTCGATCGCCCGCAATCCGCCCTTCTACGAC
CATAAAATCAACTCGCGCGCGGCCCTACACCTCTCTAGCAAGCTGCGCCA
TCTCCCCGACCGTTTGCAGTCCTCATAGTATACATTTTTTCTCCCATGAT
CCCAACCCGTGTTCGGCCTACGCCTCTCTAGCAAGCAACGCCGTCTCCCC
GATCACTTACAGTTTAATATTATTAGTTATAATAGTATATATATATATAT
ATTTCACTCGTTAGTCGCGTCTGTTTCGCGTTCTGGTTGGCAGACTTGAG
GCACCGGCCGGTGATGAACCTTCACCAGGAGCGTGGATACACTATGCCGT
CGATCTACGTCGCGCCGAATGCCTCGGTGGTCGGCAATGTAAGGATCTTC
GATCATTCGTGCGTGTGGTACGGGGCCACTGTCCGCGGTAAGCAGCATGG
GGTGGGTCAGGGTAGAGAGGGAGGGGAAGGGCTGGTCGAACCGATCCGGC
GTTGGTGACAGTTCTCGCGGATGGATTATTTTTATTCGAGTCACAGCACC
TAAACTACCATCTGAATGTAAGCATCGATCAGGCGTTCGATCCATTTGTA
GGGGGTCCGTTGCTCGGCTCGGCTCGGCTCGACTCGGACGTTAATGGTGC
TCAAAACCATATTTTATAGCGGCGTGGATTCCACGACAAAAGCTCTTGCT
GTCTGCTCGGTGACGGCGAACGAAGTTTGTTACGCCGTGGCGACGCATCC
CGTCGAAGGGGTGTTGTGGGCCTCGTGCGGGGTCAAGGATATTCCAACTT
TCGTTTTGTAGGGAAACGTTGCGGTGGATCGAGCGCTGCTTCAGCCGCAA
CCCGCGGAGTCGTAATCAACGTCTTCTCTTTTCGGCGCGTTTGCGTTGGG
CGTGACAAATCACCCCGTTAGGCGTGTGTGTGTGTGAGCTTGTGTGCGTT
GGGTGATGCGGTAGGTGACAAAAACGCCGTCAAGATTGGCGCGCACGTCC
ACGTTGGAGATAAGGCGGTCATCAACACGGTTGGGCGGGTCGACACCGGC
TTCTCCTCGGAAGTCTTGATCGAGTCTTGGGTGGTTATTGAACCCGGGGC
GGTTCTCACGTCCTGTATGATCGGCAACAGGTGACCGACCTCGATCGCGC
TTATTCATGCGTATCACCCCGTCTGTCTATTCGTTCCTTGACCACGCGCA
TATCGCCCCGAAAACCTTAAATGTCGTTGTTTTTTGTGTGCCTCTTTGAC
AAAGTCGCCGAAAATATAGATTGTAGAGTTGTTGCTTGTTTGTTTTTTCT
TAAAGCGGCACATTTTGAGTTCGCACCCTTGTGCGAATTTTGGCGGTGTT
ACCCGTCCGTCCCCTTCTCCTGGACCATTTGTTATGGCCGCCCAGCCCCC
CCGTTAAGATATAGCTCATCCTTCGTGCGCGCGTTCGCACGGCAACGCGT
GAAAATGCTCAGGTGCCACATCGGAGCCGGAGCAGTGGTGGCAGAGGGGT
CCGTGCTAGAAAATGGGGGGCAGATCGCCGCGGGAACCGTCGTACCTCCC
GGCTGCCTCGTGCCCAAGAACGAGCTATGGGCAGGCAACCCTGCCAAGTA
AGTCGAGTAGCAAAGCAGCAAGTGAACACAATGATAGTCAAGATCAAAGA
TAAGAAAAGACCGTGGATCATGCCCGCGACCTTCCGATTGCTTTCCGCGA
CAATGGCGGCAGCCATGTGAAGCTATACAGGTCACTGGTGGAGAGATTCT
CCCGCCTCCCCCCGACTTTCCGATTCTTCTTTCCCGTGGCGGAAAATTGT
AATATATGTGTCTCGCTGCGCCTATCACGACAGGTTTGTGCGTAAGCTTA
GCGACGAAGACGTGTTGGCGGTGGAGGCGGAGGCTGAGCGAAGAAGCTTG
CTTGGAGAAAAGCACGCTGACGAGTTCAACCCGCACGGCCAGGCTTACGT
CCAAGCGGAGCAGGCGTAAACAAAAATGCATGTGATCGCAGGGCAGGAAG
GATACGAAGTGGTCCAAGGGCAGGCAGGACAAGGCGGGCCACGGGGGGGC
ATGGATTATTATTTTTTTGCCGCGAGCGTCCCGTCCGTCATTGTGTTTGC
GGTGGATTTAGACCCATCAACGTCATCTGCTTTAGTCTTGCCAGCTCTCA
TCGATTTAAGCAGCTTTTTCCCAGCGTGATTCACGCAAGCGTTCCATTGA
TACGATGTTGGCGTATAGACGACAGCTTTGGCAGGAGTTAGATTTGCGAA
GCGCTCAAACGCCGCCCCTTTGTGCCAGCTTTTAAACAGGCAGAAGGACA
CCACACGTGTAAAAGCCGACACAATGTAGAGCTAACTCGTAATGACGTCA
CGTGAAAATTGAGAAGAAATAATAAAAAGGTCTTAGGTGCCACACGAGAA
CGTTTTTTAATTGGACGAATTCCTGAAGGGTACAGTATAGAGTTCTCTCG
TAGGCGGAAGTCTCGTACTCTCGTGCAACGGAAAATTCCCGTGACTCAAG
ACAAACAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16898:2374..6431-

>mRNA_H-elongata_contig16898.4289.1 ID=mRNA_H-elongata_contig16898.4289.1|Name=mRNA_H-elongata_contig16898.4289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig16898:2374..6431- (Himanthalia elongata Himel1 dioecious)
ATGCTAACGATGTCAGCGAGGCGAGGAGGCCTGGATGCTGTGTTACGCGC
ATCGGCGTCGGCGGCCAGGGCATCCCGAAAGTCCCCCAAGCCCTCCGCGA
CTACGCTGGCTCGACCCAGGACGTTTTCTTCTAGCCCCGAATATGCTAAC
GATGTCAGCGAGGCGAGGAGGCCTGGATGCTGTGTTACGCGCATCGGCGT
CGGCGGCCAGGGCATCCCGAAAGTCCCCCAAGCCCTCCGCGACTACGCTG
GCTCGACCCAGGACGTTTTCTTCTAGCCCCGAATACTTGAGGCACCGGCC
GGTGATGAACCTTCACCAGGAGCGTGGATACACTATGCCGTCGATCTACG
TCGCGCCGAATGCCTCGGTGGTCGGCAATGTAAGGATCTTCGATCATTCG
TGCGTGTGGTACGGGGCCACTGTCCGCGACTTGAGGCACCGGCCGGTGAT
GAACCTTCACCAGGAGCGTGGATACACTATGCCGTCGATCTACGTCGCGC
CGAATGCCTCGGTGGTCGGCAATGTAAGGATCTTCGATCATTCGTGCGTG
TGGTACGGGGCCACTGTCCGCGGTGACAAAAACGCCGTCAAGATTGGCGC
GCACGTCCACGTTGGAGATAAGGCGGTCATCAACACGGTTGGGCGGGTCG
ACACCGGCTTCTCCTCGGAAGTCTTGATCGAGTCTTGGGTGGTTATTGAA
CCCGGGGCGGTTCTCACGTCCTGTATGATCGGCAACAGGTGACAAAAACG
CCGTCAAGATTGGCGCGCACGTCCACGTTGGAGATAAGGCGGTCATCAAC
ACGGTTGGGCGGGTCGACACCGGCTTCTCCTCGGAAGTCTTGATCGAGTC
TTGGGTGGTTATTGAACCCGGGGCGGTTCTCACGTCCTGTATGATCGGCA
ACAGGTGCCACATCGGAGCCGGAGCAGTGGTGGCAGAGGGGTCCGTGCTA
GAAAATGGGGGGCAGATCGCCGCGGGAACCGTCGTACCTCCCGGCTGCCT
CGTGCCCAAGAACGAGCTATGGGCAGGCAACCCTGCCAAGTGCCACATCG
GAGCCGGAGCAGTGGTGGCAGAGGGGTCCGTGCTAGAAAATGGGGGGCAG
ATCGCCGCGGGAACCGTCGTACCTCCCGGCTGCCTCGTGCCCAAGAACGA
GCTATGGGCAGGCAACCCTGCCAAGTTTGTGCGTAAGCTTAGCGACGAAG
ACGTGTTGGCGGTGGAGGCGGAGGCTGAGCGAAGAAGCTTGCTTGGAGAA
AAGCACGCTGACGAGTTCAACCCGCACGGCCAGGCTTACGTCCAAGCGGA
GCAGGCGTAAGTTTGTGCGTAAGCTTAGCGACGAAGACGTGTTGGCGGTG
GAGGCGGAGGCTGAGCGAAGAAGCTTGCTTGGAGAAAAGCACGCTGACGA
GTTCAACCCGCACGGCCAGGCTTACGTCCAAGCGGAGCAGGCGTAA
back to top