mRNA_H-elongata_contig16882.4284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16882.4284.1
Unique NamemRNA_H-elongata_contig16882.4284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16882.4284.1 vs. uniprot
Match: A0A6H5L0E9_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.400e-22
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 DPCKIALGTKGLVISRVINGLCQEPLDDAPEDDVTNTLRAMDRLAESGLTTFFLGNGRGGGSALAERRAAAYLKS 225
            DP K++LG++GL + RVINGLCQ PLDD    D T+ LR+MDRLAE GLTTF LGNG GGG ALAE RA +YLKS
Sbjct:  153 DPMKVSLGSEGLEVCRVINGLCQGPLDDT-SGDPTDALRSMDRLAEMGLTTFMLGNGAGGGRALAESRAGSYLKS 226
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BLAST of mRNA_H-elongata_contig16882.4284.1 vs. uniprot
Match: D7FTT7_ECTSI (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT7_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.490e-22
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 DPCKIALGTKGLVISRVINGLCQEPLDDAPEDDVTNTLRAMDRLAESGLTTFFLGNGRGGGSALAERRAAAYLKS 225
            DP K++LG+ GL + RVINGLCQ PLDD    D T+ LR+MDRLAE GLTTF LGNG GGG ALAE RA +YLKS
Sbjct:   65 DPMKVSLGSGGLHVCRVINGLCQGPLDDT-SGDPTDALRSMDRLAEMGLTTFMLGNGAGGGRALAESRAGSYLKS 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16882.4284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0E9_9PHAE1.400e-2268.00Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D7FTT7_ECTSI3.490e-2268.00Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16882contigH-elongata_contig16882:2010..3113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D7FTT7
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-25_001490.1
Exons3
Model size258
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16882.4284.1prot_H-elongata_contig16882.4284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16882 2010..3112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.6532466-CDS-H-elongata_contig16882:2009..20781622929986.6532466-CDS-H-elongata_contig16882:2009..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 2010..2078 +
1691679235.5653467-CDS-H-elongata_contig16882:2009..20781691679235.5653467-CDS-H-elongata_contig16882:2009..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 2010..2078 +
1622929986.669742-CDS-H-elongata_contig16882:2294..24501622929986.669742-CDS-H-elongata_contig16882:2294..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 2295..2450 +
1691679235.5772493-CDS-H-elongata_contig16882:2294..24501691679235.5772493-CDS-H-elongata_contig16882:2294..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 2295..2450 +
1622929986.6823072-CDS-H-elongata_contig16882:3082..31121622929986.6823072-CDS-H-elongata_contig16882:3082..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 3083..3112 +
1691679235.5870876-CDS-H-elongata_contig16882:3082..31121691679235.5870876-CDS-H-elongata_contig16882:3082..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16882 3083..3112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16882.4284.1

>prot_H-elongata_contig16882.4284.1 ID=prot_H-elongata_contig16882.4284.1|Name=mRNA_H-elongata_contig16882.4284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
DPCKIALGTKGLVISRVINGLCQEPLDDAPEDDVTNTLRAMDRLAESGLT
TFFLGNGRGGGSALAERRAAAYLKSNLQAMKHKRD
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mRNA from alignment at H-elongata_contig16882:2010..3113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16882.4284.1 ID=mRNA_H-elongata_contig16882.4284.1|Name=mRNA_H-elongata_contig16882.4284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig16882:2010..3113+ (Himanthalia elongata Himel1 dioecious)
GATCCCTGCAAGATTGCGCTTGGGACCAAGGGACTGGTGATTTCCCGAGT
AATCAACGGGCTGTGCCAGGTGAGCGGCTGGAAAGAGGGATGAGGGTGGT
GAATGTTGAGTCTTTCGTGCGCAGAACTCCGAATCATGTACTATATAATA
CTATAAGTTCAACTGTATCGTGTCCACAACAACAACCCACGTTGCTTTGA
CATCTGCATACTCATTCGCCGATGATCTGTTGCAATGGAAAATTTATGCG
TGTCGTGTGTGTGTGTTTGTGTGTGAGTGTGTCAGGAGCCGCTCGACGAT
GCACCCGAGGATGACGTCACTAATACTCTCCGGGCTATGGATCGCTTGGC
TGAGTCCGGTCTCACAACGTTTTTCCTGGGGAATGGGCGTGGCGGAGGGA
GTGCGCTGGCTGAGCGACGCGCGGCGGCTTACCTTAAGTCGGTGAGAGGG
AGTAGGGGGGGTGGGGGGACAAGAAGAAGAAAACGTCGCGCTTCCGCCGG
GTGCCACCGACCAACCGACCCACCCCTGTGCGTCTTATTGTCGTCGCTGT
TGCTATTTTAGTTGTCCATGTCCCGGATTTACCGATCTTGCGACGATGCG
TTCAGCGTTACTGAACGTATTTCTTTAGCTGGGAGGGGAGACATCTTCTC
AAATTTTGCATGTCTTAGCTGTACGGAGGGAAGGTCGCGGGGGGGGAGGG
GGAGGGAGAGGGGGGATATTTCGTGGAGATGTTAAGATGTGTTTCCCAGC
ATGATCCATATCGTTTTCTCTCCAATATTAAATTACGCGCCATAGATAAG
CGCTTATCAGTACTTGTTTTCTTCACGGAGCTAAAAAATAAAAAGAAACA
CTCCAAGGTTGGGACACGGAGTGGGGAAGAGCATCGAAAGTTTCTTCGTA
CGAGTGGTCGACGCGCACACCAGAGCATTTATATTTTAAAACACTTGAAT
TCAGTTGAACCCTTCGAACATCCACGCCTTCTTAGCACCATGAACGGTGT
AGTCCAGGGGACCACGATCGATGACGAGAGCCACTTCTAATATTTGTTCC
CATCCTGTACGTACACATCGCAGAATCTACAGGCGATGAAACACAAAAGG
GACG
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Coding sequence (CDS) from alignment at H-elongata_contig16882:2010..3113+

>mRNA_H-elongata_contig16882.4284.1 ID=mRNA_H-elongata_contig16882.4284.1|Name=mRNA_H-elongata_contig16882.4284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig16882:2010..3113+ (Himanthalia elongata Himel1 dioecious)
GATCCCTGCAAGATTGCGCTTGGGACCAAGGGACTGGTGATTTCCCGAGT
AATCAACGGGCTGTGCCAGGATCCCTGCAAGATTGCGCTTGGGACCAAGG
GACTGGTGATTTCCCGAGTAATCAACGGGCTGTGCCAGGAGCCGCTCGAC
GATGCACCCGAGGATGACGTCACTAATACTCTCCGGGCTATGGATCGCTT
GGCTGAGTCCGGTCTCACAACGTTTTTCCTGGGGAATGGGCGTGGCGGAG
GGAGTGCGCTGGCTGAGCGACGCGCGGCGGCTTACCTTAAGTCGGAGCCG
CTCGACGATGCACCCGAGGATGACGTCACTAATACTCTCCGGGCTATGGA
TCGCTTGGCTGAGTCCGGTCTCACAACGTTTTTCCTGGGGAATGGGCGTG
GCGGAGGGAGTGCGCTGGCTGAGCGACGCGCGGCGGCTTACCTTAAGTCG
AATCTACAGGCGATGAAACACAAAAGGGACAATCTACAGGCGATGAAACA
CAAAAGGGAC
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