prot_H-elongata_contig168761.4280.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168761.4280.1
Unique Nameprot_H-elongata_contig168761.4280.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.860e-36
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0 
Query:    1 QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFTIG 102
            +P+RPLVTGEVVP HAL IG  FLL A+ASAS V+PAALQATIVASV LT AYTP+LKPIP+VKN VVA V+ AAI +GGLA+GAG+A+TL+PS+LTFF IG
Sbjct:  201 EPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIG 302
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.990e-30
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:    1 QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFTIG 102
            +P+RPLVTGEVVP HAL IG  FLL A+ASAS V+PAALQATIVASV LT AYTP+LKPIP+VKN VVA V+            AG+A+TL+PS+LTFF IG
Sbjct:   83 EPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIG 184
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: A0A7S1X008_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X008_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 9.070e-7
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0 
Query:    2 PDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGA 85
            PD+PLV+G++ P   L          LA+A  ++  +L+  I  S GLT  YTP+LK + VVKN+VVA +   +  +G LA+GA
Sbjct:   30 PDKPLVSGKIQPNVVLLTSLYMYSAILAAACLMNSMSLRTVIATSAGLTILYTPILKSMTVVKNVVVAAIXXXSPLAGALAAGA 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LBF2_9PHAE1.860e-3674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD89_ECTSI2.990e-3066.67Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A7S1X008_9CHLO9.070e-740.48Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000537UbiA prenyltransferase familyPFAMPF01040UbiAcoord: 2..99
e-value: 9.0E-11
score: 41.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 90..102
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..32
NoneNo IPR availableTMHMMTMhelixcoord: 66..88
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168761contigH-elongata_contig168761:381..1281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168761.4280.1mRNA_H-elongata_contig168761.4280.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168761 381..1281 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168761.4280.1 ID=prot_H-elongata_contig168761.4280.1|Name=mRNA_H-elongata_contig168761.4280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLT
SAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFT
IG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000537UbiA_prenyltransferase