mRNA_H-elongata_contig16860.4274.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16860.4274.1
Unique NamemRNA_H-elongata_contig16860.4274.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.550e-81
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            L ILSRGNVFADIYHMSFISFQTV +TFHRFCKYFA ELYDEY+YLPTGEDLRKVMEQY RIGFPGAVGSTDVTHIYW MCPYNQAR+YTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY
Sbjct:   88 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 216          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 4.210e-80
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            L ILSRGNVFADIYHMSFISFQTV +TFHRFCKYFA ELYDEY+YLPTGEDLRKVMEQY RIGFPGAVGSTDVTHIYW MCPYNQAR+YTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY
Sbjct:  179 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 307          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.200e-60
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            L IL+RGN FADIYHMSFIS QT  ATFHRF +YFA E+Y E+I+LPTG+  +KVM QY R+GF GA GSTDVTHI W MCPYNQAR YTGKEG PTVA+QVTVDH+ RVLAVT GFTG+TNDK+IIRY
Sbjct:  163 LQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRY 291          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.810e-52
Identity = 86/129 (66.67%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGE--DLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 381
            L IL RGNVF  IY++S++S  TV   FH+FC++FA E+YDE+I+LP+ E  +L +VM QY ++GFPGA+GSTDVTHI W  CPYNQ R YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII
Sbjct:  132 LTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTII 260          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.380e-51
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGED--LRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 381
            L IL RGN FA IY MS++S +TV   FH+FC++FA E+YDE I+LPT E   L  VM+QY R+GF GAVGS DVTHI W  CPYNQAR YTGKEG PT+A+QVTVDH+GR +AVT GFTG+TNDKTI+
Sbjct:   90 LTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIV 218          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 9.250e-51
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            L IL RGN F DI  +S +S     ATFH+FCK+FA+EL++E+IYLPTG    +VM  Y ++G  GA+GSTDVTHI W MCP+   R YTGKEG PT+A+QVTVDH+GR +A+T GFTGATNDKTI+RY
Sbjct:    8 LQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRY 136          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.140e-49
Identity = 81/129 (62.79%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            L IL RGN F DI  +S +S     ATFH+FCK+FA+EL++E+IYLPTG    +VM  Y ++G  GA+GSTDVTHI W MCP+   R YTGKEG PT+A+QVTVDH+GR +A+T GFTGATNDKTIIRY
Sbjct:  255 LQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRY 383          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.810e-48
Identity = 82/129 (63.57%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGE--DLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 381
            L IL RGN FA IY MS++S  TV A FH FCK+FA E+YDE+IYLP+ +  +L  VM+QY R+GF GA+GS DVTHI W  CPYN  R YTGKEG PT+ +QVTV+H+GR  AVT GFTG+TNDKTI+
Sbjct:  130 LTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIV 258          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 7.040e-48
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGE--DLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 381
            L IL RGN FA IY +S++S +TV   FH+FCK+FA E+YDE+IYLP+ +  +L  VM+QY R+GF GA+GS DVTHI W  CPYN AR YTGKEG PTV +QVTV+H+GR +AVT GFT +TNDKT +
Sbjct:  103 LTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTV 231          
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.630e-46
Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    7 ILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGEDLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRY 387
            +L +GN F D+  +S +S      TFH+FC++FA E++DE+IYLPTG  L +VM  +H++G+ GA GSTDVTHI W MCP+   R +TGKEG PT+A+ VTVDH GR LAVT GFTGATNDKTIIRY
Sbjct:   43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRY 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16860.4274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE3.550e-8193.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE4.210e-8093.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.200e-6075.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.810e-5266.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.380e-5166.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KH50_9PHAE9.250e-5162.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE2.140e-4962.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI1.810e-4863.57Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE7.040e-4862.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE2.630e-4659.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16860contigH-elongata_contig16860:6430..6816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D7FSK2
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.0311935-CDS-H-elongata_contig16860:6429..68161622929985.0311935-CDS-H-elongata_contig16860:6429..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16860 6430..6816 -
1691679235.127876-CDS-H-elongata_contig16860:6429..68161691679235.127876-CDS-H-elongata_contig16860:6429..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16860 6430..6816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16860.4274.1prot_H-elongata_contig16860.4274.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16860 6430..6816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16860.4274.1

>prot_H-elongata_contig16860.4274.1 ID=prot_H-elongata_contig16860.4274.1|Name=mRNA_H-elongata_contig16860.4274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
LHILSRGNVFADIYHMSFISFQTVGATFHRFCKYFAEELYDEYIYLPTGE
DLRKVMEQYHRIGFPGAVGSTDVTHIYWCMCPYNQARMYTGKEGKPTVAF
QVTVDHSGRVLAVTRGFTGATNDKTIIRY
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mRNA from alignment at H-elongata_contig16860:6430..6816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16860.4274.1 ID=mRNA_H-elongata_contig16860.4274.1|Name=mRNA_H-elongata_contig16860.4274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig16860:6430..6816- (Himanthalia elongata Himel1 dioecious)
CTGCATATTCTGAGCAGAGGAAATGTGTTCGCCGACATCTACCATATGTC TTTCATCAGCTTCCAGACGGTTGGGGCCACCTTCCACCGTTTCTGCAAGT ACTTCGCGGAGGAGCTGTACGACGAGTATATCTACCTGCCGACCGGGGAG GACTTGAGGAAGGTCATGGAGCAGTACCATCGCATAGGTTTTCCCGGCGC GGTCGGGTCTACGGACGTCACGCACATCTACTGGTGCATGTGCCCCTACA ACCAAGCCCGCATGTACACGGGCAAAGAGGGGAAGCCTACCGTCGCCTTT CAAGTGACGGTCGACCACAGCGGACGCGTACTTGCGGTGACCCGAGGGTT TACGGGGGCGACGAACGACAAGACCATCATCCGCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig16860:6430..6816-

>mRNA_H-elongata_contig16860.4274.1 ID=mRNA_H-elongata_contig16860.4274.1|Name=mRNA_H-elongata_contig16860.4274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig16860:6430..6816- (Himanthalia elongata Himel1 dioecious)
CTGCATATTCTGAGCAGAGGAAATGTGTTCGCCGACATCTACCATATGTC
TTTCATCAGCTTCCAGACGGTTGGGGCCACCTTCCACCGTTTCTGCAAGT
ACTTCGCGGAGGAGCTGTACGACGAGTATATCTACCTGCCGACCGGGGAG
GACTTGAGGAAGGTCATGGAGCAGTACCATCGCATAGGTTTTCCCGGCGC
GGTCGGGTCTACGGACGTCACGCACATCTACTGGTGCATGTGCCCCTACA
ACCAAGCCCGCATGTACACGGGCAAAGAGGGGAAGCCTACCGTCGCCTTT
CAAGTGACGGTCGACCACAGCGGACGCGTACTTGCGGTGACCCGAGGGTT
TACGGGGGCGACGAACGACAAGACCATCATCCGCTACCTGCATATTCTGA
GCAGAGGAAATGTGTTCGCCGACATCTACCATATGTCTTTCATCAGCTTC
CAGACGGTTGGGGCCACCTTCCACCGTTTCTGCAAGTACTTCGCGGAGGA
GCTGTACGACGAGTATATCTACCTGCCGACCGGGGAGGACTTGAGGAAGG
TCATGGAGCAGTACCATCGCATAGGTTTTCCCGGCGCGGTCGGGTCTACG
GACGTCACGCACATCTACTGGTGCATGTGCCCCTACAACCAAGCCCGCAT
GTACACGGGCAAAGAGGGGAAGCCTACCGTCGCCTTTCAAGTGACGGTCG
ACCACAGCGGACGCGTACTTGCGGTGACCCGAGGGTTTACGGGGGCGACG
AACGACAAGACCATCATCCGCTAC
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