mRNA_H-elongata_contig16858.4273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16858.4273.1
Unique NamemRNA_H-elongata_contig16858.4273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16858.4273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16858contigH-elongata_contig16858:4347..5409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size311
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16858.4273.1prot_H-elongata_contig16858.4273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16858 4365..5409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.949815-UTR-H-elongata_contig16858:4346..43641622929984.949815-UTR-H-elongata_contig16858:4346..4364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16858 4347..4364 -
1691679235.0882034-UTR-H-elongata_contig16858:4346..43641691679235.0882034-UTR-H-elongata_contig16858:4346..4364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16858 4347..4364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.9680204-CDS-H-elongata_contig16858:4364..46271622929984.9680204-CDS-H-elongata_contig16858:4364..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16858 4365..4627 -
1691679235.0965023-CDS-H-elongata_contig16858:4364..46271691679235.0965023-CDS-H-elongata_contig16858:4364..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16858 4365..4627 -
1622929984.9818614-CDS-H-elongata_contig16858:5381..54091622929984.9818614-CDS-H-elongata_contig16858:5381..5409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16858 5382..5409 -
1691679235.1106935-CDS-H-elongata_contig16858:5381..54091691679235.1106935-CDS-H-elongata_contig16858:5381..5409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16858 5382..5409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16858.4273.1

>prot_H-elongata_contig16858.4273.1 ID=prot_H-elongata_contig16858.4273.1|Name=mRNA_H-elongata_contig16858.4273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
GIYRKQRSSAASTEPLDYTTAARGRLLKKSFRNLGSFYVFVVVYSSLIVA
VFRVGGAHSSVANPIGSLCLFSKPKVFFLSSHTLSKSRGGHEYTLK*
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mRNA from alignment at H-elongata_contig16858:4347..5409-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16858.4273.1 ID=mRNA_H-elongata_contig16858.4273.1|Name=mRNA_H-elongata_contig16858.4273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-elongata_contig16858:4347..5409- (Himanthalia elongata Himel1 dioecious)
GGCATCTATCGAAAACAAAGATCCTCAGGTAAATCGACTCGCCGCGTAAG
TGAAGGGTGGTTGGTTACCCCTTTCAAAAGTAAATAAATATCGATGTATA
AGAAACAGGCGAAGCAAGCCACGTGCCTCCTCCAATTTTTAATCCGTTCC
CACCCTCAGCAATCCTAGAGTTTAGGTCGATTTTTTTGCGCCGGAGCTTT
CTGGTTAAGCTTTGCGTCTTAACCTCAAAGGAAATCACGTCCGCTTCCCT
CCCCTTTTAATGGGGAACAGTAAGGACCGCTTCGATCGCCGCGGACTTGC
ATTGAATCCCAGCCCTGACGGGATTTTTCGTCGGCGGAGATTTTCTTGCT
ATGAAAGGATCAAAAGTTTCCTTATTAAAATGTATCTTGAACCACTGTAA
TCCTTTTTTCTCAAAAAGCTGACCAATACTCTCTTTATTCATGAATCTTT
AGTAAAGTATAGGATTGCAACGTAAATATCGACCCTGTATCACCATATTT
ACAGCCGTATAAATTTGGTCGTGCCAGAGGCTTGAGCCTGAAAGGCGAAA
TACTCGCTGGTGACGGTAAGAAAATGGGCGTGTGCAACGATCGTCGTGTT
AAGATGCGATGTGGCTCGTAAACTACCTTCGTGTGTAAGCAGCGAGCGGC
CATGGCGATTGGAGTTTTTTCTGCTTGATCAAATTTTGTCATGGAGACAT
TTATCCCCTCTTGTCTCTTTCTACCTGACGTCTTCAATTCCCATTGTATG
TACCCTTTAATTCCTCTCATGACCTCAAACAGCGGCTAGTACCGAACCTC
TGGACTACACGACAGCAGCAAGGGGAAGGCTTCTTAAAAAAAGCTTTCGG
AATCTGGGCTCGTTCTATGTTTTTGTTGTTGTGTATAGCTCTCTGATTGT
GGCTGTGTTTCGCGTTGGGGGTGCTCATTCCTCCGTTGCAAATCCAATCG
GCTCCCTCTGCCTTTTCTCTAAACCGAAGGTATTTTTTTTGTCCTCTCAC
ACACTTTCGAAATCACGAGGAGGGCACGAGTACACACTAAAATAACGTTG
TTTTGTTTGTTAT
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Coding sequence (CDS) from alignment at H-elongata_contig16858:4347..5409-

>mRNA_H-elongata_contig16858.4273.1 ID=mRNA_H-elongata_contig16858.4273.1|Name=mRNA_H-elongata_contig16858.4273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig16858:4347..5409- (Himanthalia elongata Himel1 dioecious)
GGCATCTATCGAAAACAAAGATCCTCAGGGCATCTATCGAAAACAAAGAT
CCTCAGCGGCTAGTACCGAACCTCTGGACTACACGACAGCAGCAAGGGGA
AGGCTTCTTAAAAAAAGCTTTCGGAATCTGGGCTCGTTCTATGTTTTTGT
TGTTGTGTATAGCTCTCTGATTGTGGCTGTGTTTCGCGTTGGGGGTGCTC
ATTCCTCCGTTGCAAATCCAATCGGCTCCCTCTGCCTTTTCTCTAAACCG
AAGGTATTTTTTTTGTCCTCTCACACACTTTCGAAATCACGAGGAGGGCA
CGAGTACACACTAAAATAACGGCTAGTACCGAACCTCTGGACTACACGAC
AGCAGCAAGGGGAAGGCTTCTTAAAAAAAGCTTTCGGAATCTGGGCTCGT
TCTATGTTTTTGTTGTTGTGTATAGCTCTCTGATTGTGGCTGTGTTTCGC
GTTGGGGGTGCTCATTCCTCCGTTGCAAATCCAATCGGCTCCCTCTGCCT
TTTCTCTAAACCGAAGGTATTTTTTTTGTCCTCTCACACACTTTCGAAAT
CACGAGGAGGGCACGAGTACACACTAAAATAA
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