mRNA_H-elongata_contig168570.4272.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI) HSP 1 Score: 206 bits (525), Expect = 4.030e-64 Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMFIDEDTETAVKKALEAEMAKESQRKEEEG-GVERASV 417
GLMPNAK+GSVTRDV AVRAAKGGQAQFRAGKNG LH+G+GKVSF + DLIENVRATM+ ISNLKPEVIKGKY+SQVHLSSTMGKGVPVEVATVDPSSP+FMF+DE E AVKKALEAE+AK KE +G G +RAS+
Sbjct: 168 GLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAISNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELAKAM--KEGDGAGEQRASL 305
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A7S4D8H6_HETAK (Ribosomal protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8H6_HETAK) HSP 1 Score: 144 bits (363), Expect = 1.610e-39 Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMFIDE 321
G+MPNAKVG++T D+ AV+AA GGQ +FRAGKNGVLH G GKVSF+K +L+EN++A M+ ISN KPE KGKY+ Q HLSSTMG G+ V+VAT+DP SP+F F+DE
Sbjct: 218 GMMPNAKVGTITEDIESAVKAAMGGQVEFRAGKNGVLHAGFGKVSFEKNNLMENLKAFMVAISNAKPEGAKGKYIKQAHLSSTMGSGIKVDVATIDPGSPRF-FVDE 323
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A7S2V3Z6_9STRA (Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z6_9STRA) HSP 1 Score: 127 bits (318), Expect = 6.580e-35 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFM 309
GLMPN KVG++ DV AV++A GQ QFRAGKNGVLH GIGK+SFD D++EN+R M+ IS+ KPE KGKY+ VH+SSTMG G+ ++ VDP S +FM
Sbjct: 34 GLMPNPKVGTIATDVKAAVKSALAGQVQFRAGKNGVLHAGIGKLSFDDQDILENIRTFMVAISDAKPEGAKGKYIKGVHMSSTMGPGIKIDTPYVDPGSARFM 136
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC) HSP 1 Score: 127 bits (320), Expect = 9.500e-34 Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFM 309
GLMPN K+G+VT+DV+ A+ AAKGGQ +FRA K G++H G+GKVSF LIEN+RA M+ I + KPE KGKY+ +HLSSTMG G+ +E +DPSSPQFM
Sbjct: 159 GLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYIKAMHLSSTMGPGIRLEARLLDPSSPQFM 261
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A2D4BRJ5_PYTIN (Ribosomal protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRJ5_PYTIN) HSP 1 Score: 125 bits (315), Expect = 7.030e-33 Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMFID 318
GLMPN K+G+VT+DVA A+ AAK GQ +FRA K G++H GIGKVSF + L+EN+RA M+ IS+ KPE KGKY+ HLSSTMG G+ +++ +DPSS QFM D
Sbjct: 170 GLMPNPKLGTVTQDVADAINAAKAGQVEFRAEKKGIVHAGIGKVSFSEEALLENIRAFMVAISDAKPEGAKGKYIKAAHLSSTMGAGIALDIKYLDPSSAQFMRFD 275
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A835YR92_9STRA (Ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR92_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.380e-32 Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMFIDED 324
GLMPN K+G++T+D A AVRA+KGGQ Q+RA K+G + G+GKV+F L++NVRA M+ IS KPE KGKY+ Q ++SS+MGKGVPV +AT+DPS+ +FM I ++
Sbjct: 134 GLMPNPKLGTITKDTAPAVRASKGGQVQYRAFKDGQVLAGLGKVNFTHEQLMDNVRAFMLAISTSKPEGAKGKYMKQAYMSSSMGKGVPVTIATIDPSNGRFMLITQE 241
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A482S9K3_9ARCH (Ribosomal protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9K3_9ARCH) HSP 1 Score: 124 bits (310), Expect = 2.460e-32 Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMF 312
GLMPN K+G+VT+DVA AV AAK G QF+ K G++ G+GK+SF L+EN+R+ M+ I + KPE KGKY+ VH+SSTMG G+PVE++++DPSSP+FM
Sbjct: 150 GLMPNPKMGTVTKDVAKAVMAAKAGAIQFKVEKKGIIQAGVGKLSFASDSLLENIRSVMLAIQDSKPEGFKGKYIHTVHVSSTMGPGIPVELSSIDPSSPRFML 253
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A4D9CUC3_9STRA (Ribosomal protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUC3_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.880e-32 Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFMF 312
GLMPN K+G+VT+DV AV++A GQAQF+A + G++H+G+GKV+F+ L+EN+R M+ + N KPE KGKYL V L+STMGK VPVEVATVDP S +FM
Sbjct: 199 GLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVTFEPEALLENIRVLMVALGNAKPEGAKGKYLKGVFLTSTMGKAVPVEVATVDPRSSRFML 302
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A6G0WIL3_9STRA (Ribosomal protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIL3_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.970e-32 Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFM 309
GLMPN K+G+VT+DV A++AAKGGQ +FRA K G++H G+GKVSF L+EN+RA M+ I KPE KGKY+ HLSSTMG G+ +E +DPSSP FM
Sbjct: 158 GLMPNPKLGTVTQDVTAAIQAAKGGQVEFRAEKKGIVHAGVGKVSFSDEALVENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIRLESRFLDPSSPHFM 260
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Match: A0A485K7N6_9STRA (Ribosomal protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7N6_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.190e-32 Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 1 GLMPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIENVRATMMTISNLKPEVIKGKYLSQVHLSSTMGKGVPVEVATVDPSSPQFM 309
GLMPN K+G+VT DV A++AAKGGQ +FRA K GV+H G+GKVSF LIEN+RA M+ I KPE KGKY+ HLSSTMG G+ ++ +DP+SP FM
Sbjct: 158 GLMPNPKLGTVTNDVTAAIQAAKGGQVEFRAEKKGVVHAGVGKVSFTDAALIENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIKLDARYMDPTSPHFM 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168570.4272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig168570.4272.1 >prot_H-elongata_contig168570.4272.1 ID=prot_H-elongata_contig168570.4272.1|Name=mRNA_H-elongata_contig168570.4272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MPNAKVGSVTRDVAVAVRAAKGGQAQFRAGKNGVLHLGIGKVSFDKLDLIback to top mRNA from alignment at H-elongata_contig168570:2..1081+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig168570.4272.1 ID=mRNA_H-elongata_contig168570.4272.1|Name=mRNA_H-elongata_contig168570.4272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-elongata_contig168570:2..1081+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig168570:2..1081+ >mRNA_H-elongata_contig168570.4272.1 ID=mRNA_H-elongata_contig168570.4272.1|Name=mRNA_H-elongata_contig168570.4272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig168570:2..1081+ (Himanthalia elongata Himel1 dioecious)back to top |