mRNA_H-elongata_contig168434.4265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168434.4265.1
Unique NamemRNA_H-elongata_contig168434.4265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A6H5L626_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L626_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 6.770e-46
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEG+SGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG+
Sbjct:  325 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGL 408
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: D7FZW5_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW5_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 8.660e-44
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEG+SGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG+
Sbjct:  440 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGV 523
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A7S3Y7D2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7D2_HETAK)

HSP 1 Score: 127 bits (318), Expect = 2.610e-36
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A ++ +PRSVYV GNT STTGLTVTL+K+G  G+VGLEAGALVLSDQG CCIDEFDKM CD HALLEAMEQQ+ISIAK+G+
Sbjct:    7 MLQAVNKVAPRSVYVGGNTASTTGLTVTLAKDGKRGDVGLEAGALVLSDQGVCCIDEFDKMACDYHALLEAMEQQQISIAKSGV 90
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: UPI000A2A74C5 (DNA helicase MCM8 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A74C5)

HSP 1 Score: 124 bits (311), Expect = 3.440e-31
Identity = 66/84 (78.57%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A S  +PR VYVCGNTTSTTGLTVTLSK+GSSG+  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:  430 MLQAVSNVAPRGVYVCGNTTSTTGLTVTLSKDGSSGDYALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAGI 513
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A433T1R9_ELYCH (MCM domain-containing protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433T1R9_ELYCH)

HSP 1 Score: 122 bits (306), Expect = 4.140e-31
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A S A+PRSVYVCGNTT+ +GLTVTLSK+G SG+  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:   45 MLQAVSAAAPRSVYVCGNTTTASGLTVTLSKDGGSGDFALEAGALVLADQGCCCIDEFDKMGAQHQALLEAMEQQSISIAKAGI 128
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A3M6T405_POCDA (MCM domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T405_POCDA)

HSP 1 Score: 122 bits (307), Expect = 1.150e-30
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A S  +PR VYVCGN TST+GLTVTLSKEGSSG+  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:  396 MLQAVSNVAPRGVYVCGNATSTSGLTVTLSKEGSSGDYSLEAGALVLGDQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGV 479
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A7M7PR06_STRPU (MCM domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7PR06_STRPU)

HSP 1 Score: 122 bits (307), Expect = 1.210e-30
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML AAS  +PR VYVCGNTT+T+GLTVTL+K+GSSG+  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:  517 MLQAASNVAPRGVYVCGNTTTTSGLTVTLTKDGSSGDYSLEAGALVLGDQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGV 600
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BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A2C9L180_BIOGL (MCM domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L180_BIOGL)

HSP 1 Score: 122 bits (305), Expect = 2.210e-30
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML + +  +PRSVYVCGNTT+T+GLTVTLSKEG SG+  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:  411 MLQSVASVAPRSVYVCGNTTTTSGLTVTLSKEGGSGDYALEAGALVLADQGCCCIDEFDKMGAQHQALLEAMEQQSISIAKAGI 494
[Close]
BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A6P8I629_ACTTE (DNA helicase MCM8-like n=2 Tax=Actinia TaxID=6104 RepID=A0A6P8I629_ACTTE)

HSP 1 Score: 121 bits (304), Expect = 3.040e-30
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A S  +PR VYVCGNTTST+GLTVTL+K+GSSG+  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG+
Sbjct:  435 MLQAVSNVAPRGVYVCGNTTSTSGLTVTLTKDGSSGDYALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAGI 518
[Close]
BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Match: A0A6S7FQA4_PARCT (DNA helicase MCM8-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FQA4_PARCT)

HSP 1 Score: 121 bits (304), Expect = 3.040e-30
Identity = 65/84 (77.38%), Postives = 68/84 (80.95%), Query Frame = 3 
Query:    3 MLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGSSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGM 254
            ML A S  +PR VYVCGNTTS  GLTVTL+KE SSGE  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAGM
Sbjct:  435 MLQAVSNLAPRGVYVCGNTTSAAGLTVTLTKESSSGEYALEAGALVLADQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGM 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168434.4265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L626_9PHAE6.770e-4697.62MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZW5_ECTSI8.660e-4497.62MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y7D2_HETAK2.610e-3677.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000A2A74C53.440e-3178.57DNA helicase MCM8 n=1 Tax=Exaiptasia diaphana TaxI... [more]
A0A433T1R9_ELYCH4.140e-3176.19MCM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A3M6T405_POCDA1.150e-3077.38MCM domain-containing protein n=2 Tax=Pocillopora ... [more]
A0A7M7PR06_STRPU1.210e-3076.19MCM domain-containing protein n=2 Tax=Echinacea Ta... [more]
A0A2C9L180_BIOGL2.210e-3075.00MCM domain-containing protein n=1 Tax=Biomphalaria... [more]
A0A6P8I629_ACTTE3.040e-3076.19DNA helicase MCM8-like n=2 Tax=Actinia TaxID=6104 ... [more]
A0A6S7FQA4_PARCT3.040e-3077.38DNA helicase MCM8-like n=2 Tax=Paramuricea clavata... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168434contigH-elongata_contig168434:269..1223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.43014-CDS-H-elongata_contig168434:270..4511622929984.43014-CDS-H-elongata_contig168434:270..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168434 271..451 -
1691679234.8827665-CDS-H-elongata_contig168434:270..4511691679234.8827665-CDS-H-elongata_contig168434:270..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168434 271..451 -
1622929984.444791-CDS-H-elongata_contig168434:1143..12231622929984.444791-CDS-H-elongata_contig168434:1143..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168434 1144..1223 -
1691679234.8927407-CDS-H-elongata_contig168434:1143..12231691679234.8927407-CDS-H-elongata_contig168434:1143..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168434 1144..1223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168434.4265.1prot_H-elongata_contig168434.4265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168434 271..1223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168434.4265.1

>prot_H-elongata_contig168434.4265.1 ID=prot_H-elongata_contig168434.4265.1|Name=mRNA_H-elongata_contig168434.4265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
RCFTRLAKRPRDLSTCVETRPLRRGSRLPSAKRAPRVRSGSRREPWSFPT
RARAASTSLTRWAATHTRCWKRWNSRGSPSPKRVCSY
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mRNA from alignment at H-elongata_contig168434:269..1223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168434.4265.1 ID=mRNA_H-elongata_contig168434.4265.1|Name=mRNA_H-elongata_contig168434.4265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig168434:269..1223- (Himanthalia elongata Himel1 dioecious)
AGATGCTTCACGCGGCTAGCCAAGCGTCCCCGCGATCTGTCTACGTGTGT
GGAAACACGACCTCTACGACGGGGCTCACGGTGAGAAGGCACACAAAGCA
CGCAAGAAACCGCGCAGAGGTTATTTTTGAAGCGGCAATCGCGCATCTCG
CGCGCCCGTGATTTTTTTGTTTTTTGTTTTATTTTCAGCTCTATAGGAAA
TATCTATGTTTCTCTAAGAATTGTCCATGGTTGTCCTAGAAGGTGAGAGC
TCCCGCCTCATTCCTCTTCCTTCTGACAAGGTACTCTAACTTCTAGTATT
AATAATTACATAATTCGTCAAGGATAGCATTATAGTATAGTATATTATAG
TATACTTGAAGTGTACTCTTCGTGTAGGCGAGAGGCGACCGTTAACGTTT
TGTCTAAGAACCATTGTTTCAAGTTATTAAACCTTCTACTGTATATATCC
ATTAACAAAACCAATTCAACGATAAAGCCAACCCTTAAAGCCCCCTCCCC
CCAGAACTAAATATATATATATATATATATATATATGTTTTGTCGTTCAG
TCCATTAGAGTTCATTTTAGACAAAAAGTGGTTTAAATCGAAAGATACTA
TATATACTATAAGGCAGCAGTATTTTTTTCTCTCGCGGTTTTATGAAAAC
GGACGGAAAAAGCACTCACTGTGTCAGTGCGCCGTGTGTGACCTCCCCAA
TAGAATATCATCTTCAAAAACTGCTCTTTTGAAATAACAACAACAACAAC
CATGGAAAAATGACAAAAAAAGGTTACCCTCAGCAAAGAGGGCTCCTCGG
GTGAGGTCGGGCTCGAGGCGGGAGCCCTGGTCCTTTCCGACCAGGGCACG
TGCTGCATCGACGAGTTTGACAAGATGGGCTGCGACCCACACGCGCTGCT
GGAAGCGATGGAACAGCAGAGGATCTCCATCGCCAAAGCGGGTATGTTCA
TATCA
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Coding sequence (CDS) from alignment at H-elongata_contig168434:269..1223-

>mRNA_H-elongata_contig168434.4265.1 ID=mRNA_H-elongata_contig168434.4265.1|Name=mRNA_H-elongata_contig168434.4265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig168434:269..1223- (Himanthalia elongata Himel1 dioecious)
AGATGCTTCACGCGGCTAGCCAAGCGTCCCCGCGATCTGTCTACGTGTGT
GGAAACACGACCTCTACGACGGGGCTCACGAGATGCTTCACGCGGCTAGC
CAAGCGTCCCCGCGATCTGTCTACGTGTGTGGAAACACGACCTCTACGAC
GGGGCTCACGGTTACCCTCAGCAAAGAGGGCTCCTCGGGTGAGGTCGGGC
TCGAGGCGGGAGCCCTGGTCCTTTCCGACCAGGGCACGTGCTGCATCGAC
GAGTTTGACAAGATGGGCTGCGACCCACACGCGCTGCTGGAAGCGATGGA
ACAGCAGAGGATCTCCATCGCCAAAGCGGGTATGTTCATATGTTACCCTC
AGCAAAGAGGGCTCCTCGGGTGAGGTCGGGCTCGAGGCGGGAGCCCTGGT
CCTTTCCGACCAGGGCACGTGCTGCATCGACGAGTTTGACAAGATGGGCT
GCGACCCACACGCGCTGCTGGAAGCGATGGAACAGCAGAGGATCTCCATC
GCCAAAGCGGGTATGTTCATAT
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