mRNA_H-elongata_contig168243.4256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168243.4256.1
Unique NamemRNA_H-elongata_contig168243.4256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.970e-18
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPH 174
            F AFG I +++MSKD  TG+HKGFCF+EY +   AE+ALN+MNGF+LAGR IKVGRP+
Sbjct:  139 FGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVGRPN 196
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.960e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 177
            F  FG ++ ++MS D+ TG+HKGFCF+EY D   A++AL AMNGF+LAGRAIKVGRP N
Sbjct:  307 FANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLN 365
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A0U9HK97_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK97_KLENI)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 183
            F AFG I  ++M +DA T +HKGFCF+E+  S  AE+ALN MN F LAGR +KVGRPHN A
Sbjct:  108 FSAFGSIHKIDMPRDAATAKHKGFCFIEFHSSEAAENALNTMNEFVLAGRKLKVGRPHNIA 168
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A433PH05_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH05_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 2.440e-14
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 177
            F  FG I+S+ MS D  TG+HKGFCF+E+     A  AL+AMNG DL GR +KVGRP+N
Sbjct:  147 FGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALDAMNGADLGGRQLKVGRPNN 205
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S1N636_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N636_9EUGL)

HSP 1 Score: 75.1 bits (183), Expect = 2.440e-14
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 183
            F   G I +++M+++   G+HKGFCF+E+  +  AE A+  MNGF LAGR+++VGRPHNPA
Sbjct:  139 FERCGAIRNVQMTREPQGGKHKGFCFIEFEHTDSAEMAIQTMNGFTLAGRSLRVGRPHNPA 199
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A433QFW3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFW3_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 3.670e-14
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 177
            F  FG I+S+ MS D  TG+HKGFCF+E+     A  AL AMNG DL GR +KVGRP+N
Sbjct:  150 FGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKVGRPNN 208
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.810e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRP 171
            F +FG I  + MS +  TG+HKGFCF+EY ++  A+ AL AMNGF+LAGR IKVGRP
Sbjct:  158 FGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKVGRP 214
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A397GDA6_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GDA6_9GLOM)

HSP 1 Score: 73.6 bits (179), Expect = 5.350e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 177
            F  FG I+S+ MS D +TG+HKGFCF+E+    GA  AL +MNG +L GR +KVGRP+N
Sbjct:  184 FGQFGAIKSVSMSLDPLTGKHKGFCFIEFETPEGASLALESMNGAELGGRQLKVGRPNN 242
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BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S1H1Q7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H1Q7_HEMAN)

HSP 1 Score: 72.8 bits (177), Expect = 5.900e-14
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 177
            F  FGPI+ ++MS +  TG+ KGF F+E+ D + AE+   AMNGF+L GRAIK+GRPH+
Sbjct:   95 FAPFGPIKCIDMSYEPATGKSKGFGFVEFYDGLHAEACQMAMNGFNLGGRAIKIGRPHH 153
[Close]
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S4FXV6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FXV6_9EUGL)

HSP 1 Score: 73.9 bits (180), Expect = 6.240e-14
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 FRAFGPIESLEMSKDAVTG-QHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 183
            F   G I S++M+++   G +HKGFCF+E+A    AE+A+  MNG+ LAGR+++VGRPHNPA
Sbjct:  152 FERCGTIRSVQMTREPANGNKHKGFCFIEFASCESAETAIATMNGYQLAGRSLRVGRPHNPA 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC18_9STRA1.970e-1865.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FWX1_ECTSI8.960e-1762.71RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A0U9HK97_KLENI1.610e-1660.66Putative RNA recognition motif containing protein ... [more]
A0A433PH05_9FUNG2.440e-1457.63RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A7S1N636_9EUGL2.440e-1450.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A433QFW3_9FUNG3.670e-1457.63Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S2WU02_9STRA3.810e-1459.65Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A397GDA6_9GLOM5.350e-1455.93Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A7S1H1Q7_HEMAN5.900e-1454.24Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S4FXV6_9EUGL6.240e-1451.61Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168243contigH-elongata_contig168243:331..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.3955462-CDS-H-elongata_contig168243:330..4891622929983.3955462-CDS-H-elongata_contig168243:330..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168243 331..489 +
1691679234.4354715-CDS-H-elongata_contig168243:330..4891691679234.4354715-CDS-H-elongata_contig168243:330..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168243 331..489 +
1622929983.4116144-CDS-H-elongata_contig168243:803..8271622929983.4116144-CDS-H-elongata_contig168243:803..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168243 804..827 +
1691679234.4485958-CDS-H-elongata_contig168243:803..8271691679234.4485958-CDS-H-elongata_contig168243:803..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168243 804..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168243.4256.1prot_H-elongata_contig168243.4256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168243 331..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168243.4256.1

>prot_H-elongata_contig168243.4256.1 ID=prot_H-elongata_contig168243.4256.1|Name=mRNA_H-elongata_contig168243.4256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGR
AIKVGRPHNPA
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mRNA from alignment at H-elongata_contig168243:331..827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168243.4256.1 ID=mRNA_H-elongata_contig168243.4256.1|Name=mRNA_H-elongata_contig168243.4256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig168243:331..827+ (Himanthalia elongata Himel1 dioecious)
TTTCGGGCATTTGGTCCAATCGAGTCGCTGGAAATGTCAAAGGATGCGGT
GACCGGTCAGCACAAGGGGTTCTGTTTCCTCGAGTACGCGGACAGCATCG
GGGCGGAGTCGGCGCTAAATGCGATGAATGGATTCGACCTTGCAGGGCGC
GCAATCAAGGTGCATTGATTTTTGTATATGTTTGTTTTGGAAGGGAGAGA
TATATAAGACACGATACGGTTCCGACTCTATCGGGGTGTGTCCGGTGGGT
GAGGACACATGGTTCTGTGACTGCTTATTCCGCTTCCTCGTCGTACACTG
CGTGACAAGAGGACACTTCAGGCGCGCGCTCGTTTTATGGCGCACTAAAG
TTCAGTTCGGCCGGAGGAGGTACAGTAGATGGTGTTTCCATTGACCTTTG
CCCCGCATAATAACTATCTTCCAACCTCGGGAATACTATACTACCGTAAT
GGACTGGGCTTGATCCTACTAAGGTTGGGAGGCCACACAATCCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig168243:331..827+

>mRNA_H-elongata_contig168243.4256.1 ID=mRNA_H-elongata_contig168243.4256.1|Name=mRNA_H-elongata_contig168243.4256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig168243:331..827+ (Himanthalia elongata Himel1 dioecious)
TTTCGGGCATTTGGTCCAATCGAGTCGCTGGAAATGTCAAAGGATGCGGT
GACCGGTCAGCACAAGGGGTTCTGTTTCCTCGAGTACGCGGACAGCATCG
GGGCGGAGTCGGCGCTAAATGCGATGAATGGATTCGACCTTGCAGGGCGC
GCAATCAAGTTTCGGGCATTTGGTCCAATCGAGTCGCTGGAAATGTCAAA
GGATGCGGTGACCGGTCAGCACAAGGGGTTCTGTTTCCTCGAGTACGCGG
ACAGCATCGGGGCGGAGTCGGCGCTAAATGCGATGAATGGATTCGACCTT
GCAGGGCGCGCAATCAAGGTTGGGAGGCCACACAATCCTGCCGTTGGGAG
GCCACACAATCCTGCC
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