mRNA_H-elongata_contig16819.4253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16819.4253.1
Unique NamemRNA_H-elongata_contig16819.4253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16819.4253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16819contigH-elongata_contig16819:3984..4683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16819.4253.1prot_H-elongata_contig16819.4253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16819 4004..4441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.15922-UTR-H-elongata_contig16819:3983..40031622929983.15922-UTR-H-elongata_contig16819:3983..4003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16819 3984..4003 +
1691679234.3382099-UTR-H-elongata_contig16819:3983..40031691679234.3382099-UTR-H-elongata_contig16819:3983..4003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16819 3984..4003 +
1622929983.1968892-UTR-H-elongata_contig16819:4441..46831622929983.1968892-UTR-H-elongata_contig16819:4441..4683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16819 4442..4683 +
1691679234.3567624-UTR-H-elongata_contig16819:4441..46831691679234.3567624-UTR-H-elongata_contig16819:4441..4683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16819 4442..4683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.1784606-CDS-H-elongata_contig16819:4003..44411622929983.1784606-CDS-H-elongata_contig16819:4003..4441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16819 4004..4441 +
1691679234.3475296-CDS-H-elongata_contig16819:4003..44411691679234.3475296-CDS-H-elongata_contig16819:4003..4441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16819 4004..4441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16819.4253.1

>prot_H-elongata_contig16819.4253.1 ID=prot_H-elongata_contig16819.4253.1|Name=mRNA_H-elongata_contig16819.4253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MNIAPPVSAELDRKVALVKKASSWVAETYIAPPATFALFCMNVILLILKI
TESPPNIANPPPFNPQELLAKMVVELIKSDDFRLPQLDALKPSALDDTAP
PCDPHMLFTNVVSPPHTTFEEYPMRIAPPPPMFALLPEKIVIPLQ*
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mRNA from alignment at H-elongata_contig16819:3984..4683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16819.4253.1 ID=mRNA_H-elongata_contig16819.4253.1|Name=mRNA_H-elongata_contig16819.4253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=700bp|location=Sequence derived from alignment at H-elongata_contig16819:3984..4683+ (Himanthalia elongata Himel1 dioecious)
GCGATATATCACTCCCAGTGATGAATATAGCGCCACCAGTTTCGGCCGAA
TTGGACAGAAAGGTAGCGTTAGTGAAAAAAGCTTCCTCGTGGGTAGCCGA
GACGTATATCGCCCCTCCGGCTACCTTCGCTTTATTTTGTATGAATGTAA
TATTGCTCATTTTGAAAATTACGGAAAGTCCGCCTAACATTGCTAACCCT
CCACCGTTCAATCCACAAGAGTTGTTGGCAAAAATGGTGGTGGAGTTGAT
CAAAAGCGACGATTTCCGATTGCCCCAACTGGATGCGCTCAAGCCGAGCG
CTCTGGATGACACAGCGCCACCTTGTGACCCACATATGTTGTTTACAAAT
GTCGTTTCCCCGCCCCATACAACCTTCGAAGAATACCCGATGAGAATTGC
TCCACCCCCTCCCATGTTTGCATTATTGCCAGAAAAAATTGTTATTCCAC
TCCAGTAGGCCTCAGACCCAAGTTTCATGAATATTGCCCCCCCTTCGTAC
CTAGCGCCATTGCCAGTAAAACTTGCGCCAGCGCTCCATGACGCGTGACT
ACCATTTTCGAGATACAAGGCCCCCCCATTATAATTATCGGCATCGTTTC
GGTCAAAAGTAGCGTCTTCTACCCAAGAAAGCGTGCTGCCGACCACTGCA
GAGAGGGCACCACCAGAGTGAAAAGCCCTATTCTCGGAAAATGAAGACAC
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Coding sequence (CDS) from alignment at H-elongata_contig16819:3984..4683+

>mRNA_H-elongata_contig16819.4253.1 ID=mRNA_H-elongata_contig16819.4253.1|Name=mRNA_H-elongata_contig16819.4253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig16819:3984..4683+ (Himanthalia elongata Himel1 dioecious)
ATGAATATAGCGCCACCAGTTTCGGCCGAATTGGACAGAAAGGTAGCGTT
AGTGAAAAAAGCTTCCTCGTGGGTAGCCGAGACGTATATCGCCCCTCCGG
CTACCTTCGCTTTATTTTGTATGAATGTAATATTGCTCATTTTGAAAATT
ACGGAAAGTCCGCCTAACATTGCTAACCCTCCACCGTTCAATCCACAAGA
GTTGTTGGCAAAAATGGTGGTGGAGTTGATCAAAAGCGACGATTTCCGAT
TGCCCCAACTGGATGCGCTCAAGCCGAGCGCTCTGGATGACACAGCGCCA
CCTTGTGACCCACATATGTTGTTTACAAATGTCGTTTCCCCGCCCCATAC
AACCTTCGAAGAATACCCGATGAGAATTGCTCCACCCCCTCCCATGTTTG
CATTATTGCCAGAAAAAATTGTTATTCCACTCCAGTAGATGAATATAGCG
CCACCAGTTTCGGCCGAATTGGACAGAAAGGTAGCGTTAGTGAAAAAAGC
TTCCTCGTGGGTAGCCGAGACGTATATCGCCCCTCCGGCTACCTTCGCTT
TATTTTGTATGAATGTAATATTGCTCATTTTGAAAATTACGGAAAGTCCG
CCTAACATTGCTAACCCTCCACCGTTCAATCCACAAGAGTTGTTGGCAAA
AATGGTGGTGGAGTTGATCAAAAGCGACGATTTCCGATTGCCCCAACTGG
ATGCGCTCAAGCCGAGCGCTCTGGATGACACAGCGCCACCTTGTGACCCA
CATATGTTGTTTACAAATGTCGTTTCCCCGCCCCATACAACCTTCGAAGA
ATACCCGATGAGAATTGCTCCACCCCCTCCCATGTTTGCATTATTGCCAG
AAAAAATTGTTATTCCACTCCAGTAG
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