mRNA_H-elongata_contig168184.4252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168184.4252.1
Unique NamemRNA_H-elongata_contig168184.4252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig168184.4252.1 vs. uniprot
Match: D8LQT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT1_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.370e-35
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   13 QALLSASGETRPLAGIIRKVQGHEKELLTVTAAHHLESMREARALGMGAGMTAHRGN-GGAPMASPAQDRLLGEGVRELRRRANGEAAAVTELLEELRYEADGL 321
            +A L    ET+ LAGIIR+VQ HE+E LTVTAAHHLESMREARALGMG GM+ H G  G A  ASP+QDRLL + V +L RRA GEAAAV+ELLEELRYEA+GL
Sbjct:  238 EATLGKDSETKALAGIIRRVQEHEREKLTVTAAHHLESMREARALGMGPGMSVHSGGQGDAGAASPSQDRLLSDAVGDLLRRAEGEAAAVSELLEELRYEAEGL 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168184.4252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQT1_ECTSI1.370e-3570.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168184contigH-elongata_contig168184:232..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.4e-29
Seed eggNOG ortholog2880.D8LQT1
EggNOG free text desc.DNA repair REX1-B
EggNOG OGs2CJQ7@1,2S3U4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_002170.1
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.10945-CDS-H-elongata_contig168184:231..4561622929983.10945-CDS-H-elongata_contig168184:231..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168184 232..456 -
1691679234.319182-CDS-H-elongata_contig168184:231..4561691679234.319182-CDS-H-elongata_contig168184:231..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168184 232..456 -
1622929983.1238897-CDS-H-elongata_contig168184:1066..11681622929983.1238897-CDS-H-elongata_contig168184:1066..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168184 1067..1168 -
1691679234.3282945-CDS-H-elongata_contig168184:1066..11681691679234.3282945-CDS-H-elongata_contig168184:1066..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168184 1067..1168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168184.4252.1prot_H-elongata_contig168184.4252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168184 232..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168184.4252.1

>prot_H-elongata_contig168184.4252.1 ID=prot_H-elongata_contig168184.4252.1|Name=mRNA_H-elongata_contig168184.4252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
IDRRQALLSASGETRPLAGIIRKVQGHEKELLTVTAAHHLESMREARALG
MGAGMTAHRGNGGAPMASPAQDRLLGEGVRELRRRANGEAAAVTELLEEL
RYEADGLL*
back to top

mRNA from alignment at H-elongata_contig168184:232..1168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168184.4252.1 ID=mRNA_H-elongata_contig168184.4252.1|Name=mRNA_H-elongata_contig168184.4252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=937bp|location=Sequence derived from alignment at H-elongata_contig168184:232..1168- (Himanthalia elongata Himel1 dioecious)
ATTGACCGGCGACAGGCCCTTCTGTCCGCGAGCGGAGAAACGAGACCCCT
GGCGGGCATCATCCGCAAGGTCCAGGGACACGAGAAGGAGTTACTTACCG
TGGTAGGCGTACGTCGCGGCATCCCCTTGTTTGCTCTTATTGGCGCGTGT
GATGATTGGCCGCCCTCGCCCCAAAATGCGGCGTGAGACGCGTAGCCACA
TGGCTGGCTGGATTTGAAACAGAAAATATACCTCTCTCACGTTATGATTG
ATTGATTGATTAAATTCTCACATAAGCTGATATCAAAATCCAGCCCGTGG
TCACAAGGTACAAAAATCTCCAATACAAAAGGGAACGGCAGTTTATAGAC
TATATCTCATGTATTATTTGTATTTTCTTGGTATATTATCCGCCTTTAAT
ACTAATATAACGCGCCTATAACAAAAAATACATACCCCTCCCCTCCGCCG
CCTCCATTCCCCCGGCGGTTCGTCCATTCTATTCAAACATGAAGACTAAA
ATCACTCCTTCAAAAATATTTAGAAAAAAACTTTTTGCAGCTTTGGACAA
AGTGGAGATTTTTTTTTTAATTACAGTATAATTTCTCCTTTCCTCAAAAC
TCGAAAAACATCGAGGAAATTGAAATTACCGGTATACCGCACGTATTATA
GTTATGATGTCTTGCCTGCCCCTTACTCGTTGTCCTAACCTGAAATATAT
CTGGCTCCGCAGACTGCCGCGCATCACCTGGAATCCATGCGGGAGGCGAG
GGCGCTCGGCATGGGCGCGGGAATGACCGCACACCGTGGAAACGGAGGCG
CGCCGATGGCATCCCCGGCCCAAGATCGCCTCCTCGGGGAGGGCGTCAGG
GAGTTGAGACGTAGGGCCAACGGGGAGGCGGCTGCGGTGACGGAGCTGCT
AGAGGAGTTGCGCTACGAGGCGGATGGATTACTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig168184:232..1168-

>mRNA_H-elongata_contig168184.4252.1 ID=mRNA_H-elongata_contig168184.4252.1|Name=mRNA_H-elongata_contig168184.4252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig168184:232..1168- (Himanthalia elongata Himel1 dioecious)
ATTGACCGGCGACAGGCCCTTCTGTCCGCGAGCGGAGAAACGAGACCCCT
GGCGGGCATCATCCGCAAGGTCCAGGGACACGAGAAGGAGTTACTTACCG
TGATTGACCGGCGACAGGCCCTTCTGTCCGCGAGCGGAGAAACGAGACCC
CTGGCGGGCATCATCCGCAAGGTCCAGGGACACGAGAAGGAGTTACTTAC
CGTGACTGCCGCGCATCACCTGGAATCCATGCGGGAGGCGAGGGCGCTCG
GCATGGGCGCGGGAATGACCGCACACCGTGGAAACGGAGGCGCGCCGATG
GCATCCCCGGCCCAAGATCGCCTCCTCGGGGAGGGCGTCAGGGAGTTGAG
ACGTAGGGCCAACGGGGAGGCGGCTGCGGTGACGGAGCTGCTAGAGGAGT
TGCGCTACGAGGCGGATGGATTACTGTAAACTGCCGCGCATCACCTGGAA
TCCATGCGGGAGGCGAGGGCGCTCGGCATGGGCGCGGGAATGACCGCACA
CCGTGGAAACGGAGGCGCGCCGATGGCATCCCCGGCCCAAGATCGCCTCC
TCGGGGAGGGCGTCAGGGAGTTGAGACGTAGGGCCAACGGGGAGGCGGCT
GCGGTGACGGAGCTGCTAGAGGAGTTGCGCTACGAGGCGGATGGATTACT
GTAA
back to top