mRNA_H-elongata_contig168182.4251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168182.4251.1
Unique NamemRNA_H-elongata_contig168182.4251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.470e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 FQGYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASISLFN 162
            FQGYVH+RTD +S+VVPV+LHVS GGV+ TP EVDFGVLTSSLERRQAS+SLFN
Sbjct:  491 FQGYVHIRTDGESMVVPVELHVSKGGVDPTPLEVDFGVLTSSLERRQASVSLFN 544
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BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.540e-19
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 FQGYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASISLFN 162
            F+GYVH+RTD +S+VVPV+LHVS GGV+ +P EVDFGVLTSSLERRQAS+SL+N
Sbjct:  401 FRGYVHIRTDGESMVVPVELHVSKGGVDPSPLEVDFGVLTSSLERRQASVSLYN 454
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BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Match: A0A7S2SPF7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPF7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    7 GYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASISLFN 162
            GYVHV+TDR  +VVPV++ V  GG+  +P E+DFG+LTS  E R   ISLFN
Sbjct:   12 GYVHVKTDRDRMVVPVEVEVLQGGLHPSPKELDFGILTSPEEHRTIPISLFN 63
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BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Match: A0A7S1RDK5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RDK5_ALECA)

HSP 1 Score: 52.0 bits (123), Expect = 6.060e-7
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 FQGYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASISLFN 162
            F+G+VHV+ D+ SL+VPV++ V+ GGV  +P  VDF  L S L+ R   +++ N
Sbjct:   39 FRGFVHVKADQDSLLVPVEVLVTRGGVHVSPELVDFQTLVSPLQARSLWLTITN 92
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BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Match: A0A7S0W822_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W822_9CRYP)

HSP 1 Score: 46.2 bits (108), Expect = 9.940e-5
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    7 GYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASISLFN 162
            GYVHVRTDR  LV+PV+L V  GG+     E+ F  +    +++   I+L N
Sbjct:   31 GYVHVRTDRDDLVIPVELSVMKGGLHTAQPEMVFDTIIIPGQKKDLPIALLN 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168182.4251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KQA3_9PHAE1.470e-2081.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB05_ECTSI4.540e-1975.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SPF7_9STRA1.140e-1057.69Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S1RDK5_ALECA6.060e-744.44Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0W822_9CRYP9.940e-542.31Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168182contigH-elongata_contig168182:792..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue5.8e-16
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.0200334-CDS-H-elongata_contig168182:791..9531622929983.0200334-CDS-H-elongata_contig168182:791..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168182 792..953 -
1691679234.3093555-CDS-H-elongata_contig168182:791..9531691679234.3093555-CDS-H-elongata_contig168182:791..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168182 792..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168182.4251.1prot_H-elongata_contig168182.4251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168182 792..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168182.4251.1

>prot_H-elongata_contig168182.4251.1 ID=prot_H-elongata_contig168182.4251.1|Name=mRNA_H-elongata_contig168182.4251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
FQGYVHVRTDRKSLVVPVDLHVSTGGVEATPSEVDFGVLTSSLERRQASI
SLFN
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mRNA from alignment at H-elongata_contig168182:792..953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168182.4251.1 ID=mRNA_H-elongata_contig168182.4251.1|Name=mRNA_H-elongata_contig168182.4251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig168182:792..953- (Himanthalia elongata Himel1 dioecious)
TTTCAGGGTTACGTGCACGTCCGGACTGACCGCAAGAGCCTGGTCGTCCC
GGTGGATTTGCACGTTTCCACGGGAGGCGTTGAAGCAACACCCTCCGAGG
TGGACTTCGGCGTGCTGACCTCTTCCTTAGAGCGGAGGCAGGCGTCCATC
TCCCTCTTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig168182:792..953-

>mRNA_H-elongata_contig168182.4251.1 ID=mRNA_H-elongata_contig168182.4251.1|Name=mRNA_H-elongata_contig168182.4251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig168182:792..953- (Himanthalia elongata Himel1 dioecious)
TTTCAGGGTTACGTGCACGTCCGGACTGACCGCAAGAGCCTGGTCGTCCC
GGTGGATTTGCACGTTTCCACGGGAGGCGTTGAAGCAACACCCTCCGAGG
TGGACTTCGGCGTGCTGACCTCTTCCTTAGAGCGGAGGCAGGCGTCCATC
TCCCTCTTCAACTTTCAGGGTTACGTGCACGTCCGGACTGACCGCAAGAG
CCTGGTCGTCCCGGTGGATTTGCACGTTTCCACGGGAGGCGTTGAAGCAA
CACCCTCCGAGGTGGACTTCGGCGTGCTGACCTCTTCCTTAGAGCGGAGG
CAGGCGTCCATCTCCCTCTTCAAC
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