mRNA_H-elongata_contig168053.4245.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI) HSP 1 Score: 195 bits (496), Expect = 4.370e-62 Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 1
Query: 1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSN-VPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 351
GK+CGDECDNNRVYVSGLPTTITE DLVEKFS+IGIIARIRQ KRGYKDQWP+SVRIYKDD+ PKGDCIIKYEE SAHAALRWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct: 49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ--------KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE) HSP 1 Score: 194 bits (492), Expect = 5.000e-59 Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKD-DSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 351
GK+CGDECDNNRVYVSGLPTTITE DLV+KFS+IGIIARIRQA KRGYKDQWP+SVRIYKD ++ PKGDCIIKYEE SAHAA+RWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct: 233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARAS----KRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI) HSP 1 Score: 120 bits (301), Expect = 8.510e-32 Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN+R+Y+S LP + ++L E F SIGI+ARI+Q KRGYKDQWPYS+++Y DDS KGD ++ YE+ ++AH+A +F+G + G KI V MA K +
Sbjct: 104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 206
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI) HSP 1 Score: 120 bits (301), Expect = 1.530e-30 Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN+R+Y+S LP + ++L E F SIGI+ARI+Q KRGYKDQWPYS+++Y DDS KGD ++ YE+ ++AH+A +F+G + G KI V MA K +
Sbjct: 203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 305
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA) HSP 1 Score: 117 bits (292), Expect = 2.750e-29 Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN R+Y+SGLP + E +L E F IG +AR++Q KRGYKDQWPY+++IY+D+S KGD ++ YE+ +AH+A +F+ G KI VAMAAK +
Sbjct: 200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 302
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA) HSP 1 Score: 117 bits (292), Expect = 2.900e-29 Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN R+Y+SGLP + E +L E F IG +ARI+Q KRGYKDQWPY+++IY+D+S KGD ++ YE+ +AH+A +F+ G KI VAMAAK +
Sbjct: 203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A835HAE2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HAE2_9MAGN) HSP 1 Score: 117 bits (292), Expect = 8.170e-29 Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN R+Y+S LP +T +L E FS IG +ARI+Q KRGYKDQWPYS++IY DDS KGD ++ YE+ ++AH+A +F+ G KI V MA K +
Sbjct: 254 ENCGDTCDNARIYISNLPADVTTDELQELFSGIGQVARIKQ--------KRGYKDQWPYSIKIYTDDSGKSKGDAVLSYEDPSAAHSAGGFFNNYELRGHKITVGMAEKSA 356
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A0K9QQJ8_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9QQJ8_SPIOL) HSP 1 Score: 117 bits (293), Expect = 9.740e-29 Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN+R+Y+S LP + ++L E F SIG +ARI+Q KRGYKDQWPYS+++Y DDS KGD ++ YE+ ++AH+A +F+G + G KI V+MA K +
Sbjct: 306 ENCGDSCDNSRIYISNLPPDVAVEELRELFGSIGTVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSAGGFFNGHDIRGYKINVSMAEKSA 408
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9U3C2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U3C2_PHYPA) HSP 1 Score: 117 bits (292), Expect = 1.820e-28 Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
+NCGD CDN R+Y+SGLP + E +L E F IG +ARI+Q KRGYKDQWPY+++IY+D+S KGD ++ YE+ +AH+A +F+ G KI VAMAAK +
Sbjct: 203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9) HSP 1 Score: 115 bits (287), Expect = 1.950e-28 Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
++CGD CDN+R+Y+S LP +T ++L E F SIG +ARI+Q KRGYKDQWP+S++IY D+ KGD ++ YE+ ++AH+A +F+ +F G KI VAMA K +
Sbjct: 207 EHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ--------KRGYKDQWPWSIKIYTDEKGNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEKSA 309 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig168053.4245.1 >prot_H-elongata_contig168053.4245.1 ID=prot_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIback to top mRNA from alignment at H-elongata_contig168053:186..1179+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig168053.4245.1 ID=mRNA_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig168053:186..1179+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig168053:186..1179+ >mRNA_H-elongata_contig168053.4245.1 ID=mRNA_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig168053:186..1179+ (Himanthalia elongata Himel1 dioecious)back to top |