mRNA_H-elongata_contig168053.4245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168053.4245.1
Unique NamemRNA_H-elongata_contig168053.4245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 4.370e-62
Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSN-VPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 351
            GK+CGDECDNNRVYVSGLPTTITE DLVEKFS+IGIIARIRQ        KRGYKDQWP+SVRIYKDD+   PKGDCIIKYEE  SAHAALRWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct:   49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ--------KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.000e-59
Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 1
Query:    1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKD-DSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 351
            GK+CGDECDNNRVYVSGLPTTITE DLV+KFS+IGIIARIRQA       KRGYKDQWP+SVRIYKD ++  PKGDCIIKYEE  SAHAA+RWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct:  233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARAS----KRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 8.510e-32
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN+R+Y+S LP  +  ++L E F SIGI+ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V MA K +
Sbjct:  104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 206          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 1.530e-30
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN+R+Y+S LP  +  ++L E F SIGI+ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V MA K +
Sbjct:  203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 305          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 2.750e-29
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +AR++Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 302          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 2.900e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +ARI+Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A835HAE2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HAE2_9MAGN)

HSP 1 Score: 117 bits (292), Expect = 8.170e-29
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN R+Y+S LP  +T  +L E FS IG +ARI+Q        KRGYKDQWPYS++IY DDS   KGD ++ YE+ ++AH+A  +F+     G KI V MA K +
Sbjct:  254 ENCGDTCDNARIYISNLPADVTTDELQELFSGIGQVARIKQ--------KRGYKDQWPYSIKIYTDDSGKSKGDAVLSYEDPSAAHSAGGFFNNYELRGHKITVGMAEKSA 356          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A0K9QQJ8_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9QQJ8_SPIOL)

HSP 1 Score: 117 bits (293), Expect = 9.740e-29
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN+R+Y+S LP  +  ++L E F SIG +ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V+MA K +
Sbjct:  306 ENCGDSCDNSRIYISNLPPDVAVEELRELFGSIGTVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSAGGFFNGHDIRGYKINVSMAEKSA 408          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9U3C2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U3C2_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 1.820e-28
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +ARI+Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305          
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9)

HSP 1 Score: 115 bits (287), Expect = 1.950e-28
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 336
            ++CGD CDN+R+Y+S LP  +T ++L E F SIG +ARI+Q        KRGYKDQWP+S++IY D+    KGD ++ YE+ ++AH+A  +F+  +F G KI VAMA K +
Sbjct:  207 EHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ--------KRGYKDQWPWSIKIYTDEKGNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEKSA 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIQ1_ECTSI4.370e-6282.20RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L8L8_9PHAE5.000e-5980.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A803KS81_CHEQI8.510e-3249.55RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A803LCU5_CHEQI1.530e-3049.55RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A9T0V1_PHYPA2.750e-2948.65Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2K1JP98_PHYPA2.900e-2949.55Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A835HAE2_9MAGN8.170e-2949.55Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A0K9QQJ8_SPIOL9.740e-2948.65Uncharacterized protein n=3 Tax=Chenopodioideae Ta... [more]
A9U3C2_PHYPA1.820e-2849.55Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
UPI000905CCC91.950e-2847.75transcription initiation factor TFIID subunit 15b-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168053contigH-elongata_contig168053:186..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue3.6e-47
Seed eggNOG ortholog2880.D8LIQ1
KEGG koko:K13098,ko:K14651
KEGG Pathwayko03022,ko05202,map03022,map05202
EggNOG free text desc.RNA binding
EggNOG OGsKOG1995@1,KOG1995@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.2705295-CDS-H-elongata_contig168053:185..3351622929982.2705295-CDS-H-elongata_contig168053:185..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168053 186..335 +
1691679233.9964738-CDS-H-elongata_contig168053:185..3351691679233.9964738-CDS-H-elongata_contig168053:185..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168053 186..335 +
1622929982.2935178-CDS-H-elongata_contig168053:975..11791622929982.2935178-CDS-H-elongata_contig168053:975..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168053 976..1179 +
1691679234.0065913-CDS-H-elongata_contig168053:975..11791691679234.0065913-CDS-H-elongata_contig168053:975..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168053 976..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168053.4245.1prot_H-elongata_contig168053.4245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168053 186..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168053.4245.1

>prot_H-elongata_contig168053.4245.1 ID=prot_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSI
KRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVG
KKIGVAMAAKPSLNNRY*
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mRNA from alignment at H-elongata_contig168053:186..1179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168053.4245.1 ID=mRNA_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig168053:186..1179+ (Himanthalia elongata Himel1 dioecious)
GGCAAAAACTGTGGAGATGAATGCGACAATAACCGTGTGTATGTCTCGGG CCTTCCCACAACGATCACCGAGAAAGACTTGGTCGAAAAATTCAGCTCCA TCGGCATCATCGCCCGCATTCGCCAGGCAAGCCAGCAGTTGTGTTCGATA GTGCGTGCTACTGTATTGTTATTTTAGTGTTTTACATCGTGGGGTCGGCG TCCCCCTACGCGCTTTTGCGTGGACCTGGTGCTTGCATGGATGCGCTTGC TGGTGGAAGGTGCTGCGTCCCTTCTTCGATCCATTCTTTTTAGCTCCAAG CGCGATGGCAGATAGGGGCCGGCCAATGGGTGCCTGTTGTCGAGTATTTA TTGTTGGGAGAGATCGAGAAAGCGCGAATCTAGTGGGTGCTTTTAGACGT CGTCGTCTTCAGAGAACAGGAGGTGCATACTTATCTCGTGTTGCCGTCTT GCTATGACGTCCTTTCGATTTGTTCCCCCATCCATCAAGAAAGGGATACT CAAGGGCCTTCATATGGTCCACTTGTTTTCCTCGCGAGAGTTTATACATT CGATCGATAGCCCCGTCATAGAACAAGCTTTGGATATCCTTGCATCGTCC TGGCTTGGTTGGCTTGAGACTGTCCCCCGATGGTGTCCATTTCCTAGAAC GCCTCTCTCCCCCGCTTCTAATAATGATCTGTTGGACGCGGGTCCAAACC GCGCAGTGGCAGGAGTACTGACCCTATCGGCTGTTTTGGCCTGCTTTTGC TTGTTTTAATTGTATTTGAATATGTAACCGCCGAACACAGAAACGGGGCT ACAAGGACCAGTGGCCCTACTCCGTCCGCATCTACAAAGACGACTCCAAC GTGCCTAAGGGAGACTGCATAATAAAGTACGAGGAGGCCACCTCTGCCCA CGCCGCGCTCCGGTGGTTCGACGGCATCAACTTCGTGGGCAAAAAGATTG GCGTCGCAATGGCCGCCAAGCCCTCCCTGAATAACCGGTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig168053:186..1179+

>mRNA_H-elongata_contig168053.4245.1 ID=mRNA_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig168053:186..1179+ (Himanthalia elongata Himel1 dioecious)
GGCAAAAACTGTGGAGATGAATGCGACAATAACCGTGTGTATGTCTCGGG
CCTTCCCACAACGATCACCGAGAAAGACTTGGTCGAAAAATTCAGCTCCA
TCGGCATCATCGCCCGCATTCGCCAGGCAAGCCAGCAGTTGTGTTCGATA
GGCAAAAACTGTGGAGATGAATGCGACAATAACCGTGTGTATGTCTCGGG
CCTTCCCACAACGATCACCGAGAAAGACTTGGTCGAAAAATTCAGCTCCA
TCGGCATCATCGCCCGCATTCGCCAGGCAAGCCAGCAGTTGTGTTCGATA
AAACGGGGCTACAAGGACCAGTGGCCCTACTCCGTCCGCATCTACAAAGA
CGACTCCAACGTGCCTAAGGGAGACTGCATAATAAAGTACGAGGAGGCCA
CCTCTGCCCACGCCGCGCTCCGGTGGTTCGACGGCATCAACTTCGTGGGC
AAAAAGATTGGCGTCGCAATGGCCGCCAAGCCCTCCCTGAATAACCGGTA
CTGAAAACGGGGCTACAAGGACCAGTGGCCCTACTCCGTCCGCATCTACA
AAGACGACTCCAACGTGCCTAAGGGAGACTGCATAATAAAGTACGAGGAG
GCCACCTCTGCCCACGCCGCGCTCCGGTGGTTCGACGGCATCAACTTCGT
GGGCAAAAAGATTGGCGTCGCAATGGCCGCCAAGCCCTCCCTGAATAACC
GGTACTGA
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