mRNA_H-elongata_contig16799.4243.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE) HSP 1 Score: 266 bits (680), Expect = 2.750e-85 Identity = 131/213 (61.50%), Postives = 159/213 (74.65%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAP---SKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQE-----ASVDTPS 615
Y +LLESRPLATKA+TSGAIAFAGD++CQL+A + E+ QH P A +E+DW R +RFTF+GAA+VAPALH WYGFL+R+ PGTA TVVKRV+LDQL+F PVFLA FLS +M++DGNAAK+ KLRADYP T+V NWGYWIP Q+INFRFV+P YQVL+AN GFFWNIYLS+QSNK + + A+VD S
Sbjct: 73 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVDVTS 285
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.140e-82 Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMA---ARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGL 588
Y +LLESRPLATKA+TSGAIAFAGD++CQL+A A+ EE+ +++ A +E+DW R +RFTF+GAA+VAPALH WYGFL+++ PGTA TVVKRV+LDQL+F P FLA FLS +M++DGNAAK+ KLRADY TLV NWGYWIP Q+INFRFV+P YQVL+AN GFFWNIYLS+QSNK +
Sbjct: 2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 200
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA) HSP 1 Score: 187 bits (474), Expect = 3.440e-54 Identity = 99/209 (47.37%), Postives = 122/209 (58.37%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGA-----ELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVDTP 612
Y+ LLE+ P+ATKA+TS AIA GDI CQ+ R + + G A A A +G+ LDW RC RF L AL APA H WYG L R PG + KR++LDQ VF+PVF+ F SA+MV++G AA++ KLR DY TLV NW W+P Q+ NFR V YQV ANC G FWN YLS QS K ++ A P
Sbjct: 51 YSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAA---AAGAGEAGSNAGAADGAATWGSTSQQRHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKIKSAPQSQP 256
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT) HSP 1 Score: 172 bits (435), Expect = 3.130e-49 Identity = 86/203 (42.36%), Postives = 118/203 (58.13%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVDT 609
Y LLE+ PL TK IT+GAIA D+TCQ+ +ED + + +DW R FT + L P HYWYGFL K GT +KRV LDQ++F PV LA+F SA+++++G + ++ KLR D P T++ N+ WIP Q+INF+FV PY+VL+AN GFFWNIYLS+ + G ++ DT
Sbjct: 35 YNKLLETHPLMTKCITAGAIAAVADVTCQVSFP---SDEDANKSLLE-----------------RMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSYAAVNGTSSSAGDT 217
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.600e-48 Identity = 102/214 (47.66%), Postives = 128/214 (59.81%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAA-RAVEEE-----DLLEEIQHDVGRVASAPSKAI-------------FFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPG-TAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNK 582
Y+ALL SRPL TK +T+ IA GD+ CQL A RA EEE D+ H G VAS + A ++GA +D R +F L AAL AP+ HYWY L + G TA+ VKR++LDQ +F PVF+ F SA+MV++G AAK+ KL+ DY TLV NWG W+P Q+INFR V PYQVL+AN GFFWN +S Q K
Sbjct: 28 YSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGA-VDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFK 240
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A7S2W1T0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1T0_9STRA) HSP 1 Score: 169 bits (427), Expect = 3.060e-48 Identity = 86/201 (42.79%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAA-KVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEAS 600
YT LE+ PL TK +TSG I+ +GD+ CQ M R ++E G +S + + DW R RFT LG LVAP +HYWYG L+ +FPG++ ++ KR+ LDQ F P+FL TF+ + ++G +A ++ KL+ +YP L+ NW WIP QIINF FV + VLF+N GF WN YLS Q++ E S
Sbjct: 12 YTRKLETHPLTTKCLTSGFISGSGDMFCQFMVHRNKKKEXXX-------GNDSSGSNNEVSSLFRPDWLRACRFTILGTVLVAPTVHYWYGMLMTRFPGSSFVSIFKRLILDQAFFAPLFLPTFMLNLYALEGRSAIEMQHKLQTEYPTALLANWSIWIPAQIINFAFVPQKFMVLFSNMIGFGWNAYLSWQTHDRHGEKS 205
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.720e-48 Identity = 90/203 (44.33%), Postives = 119/203 (58.62%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSN-----KGLQE 594
YT+LLE+ PL+TK T GAIA GD+ CQL+ +EE++ + + LD R FTFLG L++P LH WYGFL + PG + V KR++LDQL F P FL FLS+++ ++GN ++ KLRAD+ NWG W+P QI+NFRFV P QVLF+N G WN YLS+ S+ KGL E
Sbjct: 40 YTSLLETHPLSTKIATGGAIAGLGDMGCQLV----LEEKEKHKPL--------------------LDVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGNKEQIPDKLRADWWTVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHADVPAKGLLE 218
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.210e-46 Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSH 570
Y LLE+ PL+TK +T GAIA AGD++CQL +E +D + D R FTFLG AL++P LH WYGFL + PG + +VKR++LDQLVF P FL F S+++ ++G+ ++ KLRAD+ NW W+P QIINFRFV QVLFAN G WN YLS+
Sbjct: 42 YATLLETHPLSTKIVTGGAIAGAGDVSCQLF----IEADD----------------------NGKFDVKRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSRAIVKRLALDQLVFAPTFLCVFFSSLLTLEGHLDQLPEKLRADWWPATKANWAVWVPAQIINFRFVPGSLQVLFANVVGLVWNSYLSY 205
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA) HSP 1 Score: 155 bits (392), Expect = 4.100e-43 Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVD 606
Y +LL + PL+TK T GAIA GD+ CQL LLE + D R FT LG L++P LH WYGFL + G A V+KR++LDQL F P+FL FLS+++ ++G+A + KLR D+ + NWG W+P QI+NFRFV P QVLF+N G WN YLS+ S+ + + ++
Sbjct: 18 YASLLGTHPLSTKIATGGAIAGLGDVGCQL----------LLEGDKR------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTVPKTLLE 191
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A0L0G5N4_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5N4_9EUKA) HSP 1 Score: 152 bits (383), Expect = 2.160e-41 Identity = 85/202 (42.08%), Postives = 108/202 (53.47%), Query Frame = 1
Query: 1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVD 606
Y LE+ PL TKA++SG IA GDI CQ+ E + + A +K G+E W R F+ LG + PALH WY L R PGT V KR++ DQ VF PVF+ +F+S +++ G A V KL + T+ NW WIP Q INF FVSP QVLFANC G W++YLS SN A+ D
Sbjct: 43 YMRWLETYPLKTKALSSGVIAGLGDILCQV----GFENKSMFS---------AGDGNK----GSEFGWRRFFVFSALGGLYLGPALHMWYRVLGRVLPGTTQLAVAKRLAADQFVFAPVFIPSFMSLTLILQGKIADVPKKLADAWWPTVKANWAVWIPAQYINFSFVSPNLQVLFANCVGLVWHVYLSKVSNNDNTPAAAD 227 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16799.4243.1 >prot_H-elongata_contig16799.4243.1 ID=prot_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp MAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAAback to top mRNA from alignment at H-elongata_contig16799:4814..6884- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16799.4243.1 ID=mRNA_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-elongata_contig16799:4814..6884- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16799:4814..6884- >mRNA_H-elongata_contig16799.4243.1 ID=mRNA_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig16799:4814..6884- (Himanthalia elongata Himel1 dioecious)back to top |