mRNA_H-elongata_contig16799.4243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16799.4243.1
Unique NamemRNA_H-elongata_contig16799.4243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.750e-85
Identity = 131/213 (61.50%), Postives = 159/213 (74.65%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAP---SKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQE-----ASVDTPS 615
            Y +LLESRPLATKA+TSGAIAFAGD++CQL+A    + E+     QH        P     A    +E+DW R +RFTF+GAA+VAPALH WYGFL+R+ PGTA  TVVKRV+LDQL+F PVFLA FLS +M++DGNAAK+  KLRADYP T+V NWGYWIP Q+INFRFV+P YQVL+AN  GFFWNIYLS+QSNK + +     A+VD  S
Sbjct:   73 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVDVTS 285          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.140e-82
Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMA---ARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGL 588
            Y +LLESRPLATKA+TSGAIAFAGD++CQL+A   A+  EE+   +++             A    +E+DW R +RFTF+GAA+VAPALH WYGFL+++ PGTA  TVVKRV+LDQL+F P FLA FLS +M++DGNAAK+  KLRADY  TLV NWGYWIP Q+INFRFV+P YQVL+AN  GFFWNIYLS+QSNK +
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 200          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.440e-54
Identity = 99/209 (47.37%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGA-----ELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVDTP 612
            Y+ LLE+ P+ATKA+TS AIA  GDI CQ+   R +           + G  A A   A  +G+      LDW RC RF  L  AL APA H WYG L R  PG  +    KR++LDQ VF+PVF+  F SA+MV++G AA++  KLR DY  TLV NW  W+P Q+ NFR V   YQV  ANC G FWN YLS QS K ++ A    P
Sbjct:   51 YSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAA---AAGAGEAGSNAGAADGAATWGSTSQQRHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKIKSAPQSQP 256          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT)

HSP 1 Score: 172 bits (435), Expect = 3.130e-49
Identity = 86/203 (42.36%), Postives = 118/203 (58.13%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVDT 609
            Y  LLE+ PL TK IT+GAIA   D+TCQ+       +ED  + +                    +DW R   FT +   L  P  HYWYGFL  K  GT     +KRV LDQ++F PV LA+F SA+++++G + ++  KLR D P T++ N+  WIP Q+INF+FV  PY+VL+AN  GFFWNIYLS+ +  G   ++ DT
Sbjct:   35 YNKLLETHPLMTKCITAGAIAAVADVTCQVSFP---SDEDANKSLLE-----------------RMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSYAAVNGTSSSAGDT 217          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.600e-48
Identity = 102/214 (47.66%), Postives = 128/214 (59.81%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAA-RAVEEE-----DLLEEIQHDVGRVASAPSKAI-------------FFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPG-TAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNK 582
            Y+ALL SRPL TK +T+  IA  GD+ CQL  A RA EEE     D+     H  G VAS  + A              ++GA +D  R  +F  L AAL AP+ HYWY  L +   G TA+   VKR++LDQ +F PVF+  F SA+MV++G AAK+  KL+ DY  TLV NWG W+P Q+INFR V  PYQVL+AN  GFFWN  +S Q  K
Sbjct:   28 YSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGA-VDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFK 240          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A7S2W1T0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1T0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.060e-48
Identity = 86/201 (42.79%), Postives = 119/201 (59.20%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAA-KVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEAS 600
            YT  LE+ PL TK +TSG I+ +GD+ CQ M  R  ++E          G  +S  +  +      DW R  RFT LG  LVAP +HYWYG L+ +FPG++  ++ KR+ LDQ  F P+FL TF+  +  ++G +A ++  KL+ +YP  L+ NW  WIP QIINF FV   + VLF+N  GF WN YLS Q++    E S
Sbjct:   12 YTRKLETHPLTTKCLTSGFISGSGDMFCQFMVHRNKKKEXXX-------GNDSSGSNNEVSSLFRPDWLRACRFTILGTVLVAPTVHYWYGMLMTRFPGSSFVSIFKRLILDQAFFAPLFLPTFMLNLYALEGRSAIEMQHKLQTEYPTALLANWSIWIPAQIINFAFVPQKFMVLFSNMIGFGWNAYLSWQTHDRHGEKS 205          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.720e-48
Identity = 90/203 (44.33%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSN-----KGLQE 594
            YT+LLE+ PL+TK  T GAIA  GD+ CQL+    +EE++  + +                    LD  R   FTFLG  L++P LH WYGFL  + PG +   V KR++LDQL F P FL  FLS+++ ++GN  ++  KLRAD+      NWG W+P QI+NFRFV  P QVLF+N  G  WN YLS+ S+     KGL E
Sbjct:   40 YTSLLETHPLSTKIATGGAIAGLGDMGCQLV----LEEKEKHKPL--------------------LDVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGNKEQIPDKLRADWWTVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHADVPAKGLLE 218          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.210e-46
Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSH 570
            Y  LLE+ PL+TK +T GAIA AGD++CQL     +E +D                        + D  R   FTFLG AL++P LH WYGFL +  PG +   +VKR++LDQLVF P FL  F S+++ ++G+  ++  KLRAD+      NW  W+P QIINFRFV    QVLFAN  G  WN YLS+
Sbjct:   42 YATLLETHPLSTKIVTGGAIAGAGDVSCQLF----IEADD----------------------NGKFDVKRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSRAIVKRLALDQLVFAPTFLCVFFSSLLTLEGHLDQLPEKLRADWWPATKANWAVWVPAQIINFRFVPGSLQVLFANVVGLVWNSYLSY 205          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.100e-43
Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVD 606
            Y +LL + PL+TK  T GAIA  GD+ CQL          LLE  +                    D  R   FT LG  L++P LH WYGFL  +  G A   V+KR++LDQL F P+FL  FLS+++ ++G+A  +  KLR D+ +    NWG W+P QI+NFRFV  P QVLF+N  G  WN YLS+ S+  + +  ++
Sbjct:   18 YASLLGTHPLSTKIATGGAIAGLGDVGCQL----------LLEGDKR------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTVPKTLLE 191          
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Match: A0A0L0G5N4_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5N4_9EUKA)

HSP 1 Score: 152 bits (383), Expect = 2.160e-41
Identity = 85/202 (42.08%), Postives = 108/202 (53.47%), Query Frame = 1
Query:    1 YTALLESRPLATKAITSGAIAFAGDITCQLMAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAALVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMVIDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCGGFFWNIYLSHQSNKGLQEASVD 606
            Y   LE+ PL TKA++SG IA  GDI CQ+      E + +           A   +K    G+E  W R   F+ LG   + PALH WY  L R  PGT    V KR++ DQ VF PVF+ +F+S  +++ G  A V  KL   +  T+  NW  WIP Q INF FVSP  QVLFANC G  W++YLS  SN     A+ D
Sbjct:   43 YMRWLETYPLKTKALSSGVIAGLGDILCQV----GFENKSMFS---------AGDGNK----GSEFGWRRFFVFSALGGLYLGPALHMWYRVLGRVLPGTTQLAVAKRLAADQFVFAPVFIPSFMSLTLILQGKIADVPKKLADAWWPTVKANWAVWIPAQYINFSFVSPNLQVLFANCVGLVWHVYLSKVSNNDNTPAAAD 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16799.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL95_9PHAE2.750e-8561.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH2_ECTSI1.140e-8262.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNC4_9STRA3.440e-5447.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4Q2YFM0_9BACT3.130e-4942.36Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobia... [more]
A0A835YKC9_9STRA1.600e-4847.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2W1T0_9STRA3.060e-4842.79Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6A3NKH9_9STRA3.720e-4844.33Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662Y1B5_9STRA3.210e-4644.21Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225WCL6_9STRA4.100e-4340.59Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID... [more]
A0A0L0G5N4_9EUKA2.160e-4142.08Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16799contigH-elongata_contig16799:4814..6884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue4.4e-52
Seed eggNOG ortholog2880.D8LTH2
KEGG koko:K01301,ko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
EC3.4.17.21
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-02_005610.1
Exons5
Model size882
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.0008404-UTR-H-elongata_contig16799:4813..50591622929982.0008404-UTR-H-elongata_contig16799:4813..5059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 4814..5059 -
1691679233.871363-UTR-H-elongata_contig16799:4813..50591691679233.871363-UTR-H-elongata_contig16799:4813..5059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 4814..5059 -
1622929982.1016133-UTR-H-elongata_contig16799:6494..65231622929982.1016133-UTR-H-elongata_contig16799:6494..6523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 6495..6523 -
1691679233.9286842-UTR-H-elongata_contig16799:6494..65231691679233.9286842-UTR-H-elongata_contig16799:6494..6523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 6495..6523 -
1622929982.1169991-UTR-H-elongata_contig16799:6823..68841622929982.1169991-UTR-H-elongata_contig16799:6823..6884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 6824..6884 -
1691679233.9436202-UTR-H-elongata_contig16799:6823..68841691679233.9436202-UTR-H-elongata_contig16799:6823..6884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 6824..6884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.0191774-CDS-H-elongata_contig16799:5059..51761622929982.0191774-CDS-H-elongata_contig16799:5059..5176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5060..5176 -
1691679233.886117-CDS-H-elongata_contig16799:5059..51761691679233.886117-CDS-H-elongata_contig16799:5059..5176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5060..5176 -
1622929982.0394013-CDS-H-elongata_contig16799:5485..55931622929982.0394013-CDS-H-elongata_contig16799:5485..5593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5486..5593 -
1691679233.896481-CDS-H-elongata_contig16799:5485..55931691679233.896481-CDS-H-elongata_contig16799:5485..5593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5486..5593 -
1622929982.0636723-CDS-H-elongata_contig16799:5984..61281622929982.0636723-CDS-H-elongata_contig16799:5984..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5985..6128 -
1691679233.9083076-CDS-H-elongata_contig16799:5984..61281691679233.9083076-CDS-H-elongata_contig16799:5984..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 5985..6128 -
1622929982.0818934-CDS-H-elongata_contig16799:6317..64941622929982.0818934-CDS-H-elongata_contig16799:6317..6494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 6318..6494 -
1691679233.920896-CDS-H-elongata_contig16799:6317..64941691679233.920896-CDS-H-elongata_contig16799:6317..6494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 6318..6494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16799.4243.1prot_H-elongata_contig16799.4243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16799 5060..6494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16799.4243.1

>prot_H-elongata_contig16799.4243.1 ID=prot_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MAARAVEEEDLLEEIQHDVGRVASAPSKAIFFGAELDWNRCIRFTFLGAA
LVAPALHYWYGFLLRKFPGTAIPTVVKRVSLDQLVFTPVFLATFLSAIMV
IDGNAAKVAPKLRADYPATLVGNWGYWIPLQIINFRFVSPPYQVLFANCG
GFFWNIYLSHQSNKGLQEASVDTPSYPQDSS*
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mRNA from alignment at H-elongata_contig16799:4814..6884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16799.4243.1 ID=mRNA_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-elongata_contig16799:4814..6884- (Himanthalia elongata Himel1 dioecious)
TACACCGCGTTGCTTGAGTCCCGACCTCTGGCGACGAAAGCGATCACATC AGGGGCGATCGGTAAGATATCTCGACACTGGTACCCGGAGCGATATAGAC ATGTGCGGGCAGCAACGGGTTGCGGTCGGGGTTAAATATATATTGTGATG CTTGGTAGACCGGTTGACCTCCTGAAGTATCATGCTCGCCTAGATTGGGG AACGTCACTTATTCAATTACGCGTACTGTGACGATACCCACCACCTCAGA CACAGGATCAGCAGGTGGGACATTCAGGTTCAACAGACATGGCTTCTCCC TAAAATCCAACCCATGACTCTCGCGCCCCGTGGTCTTCACGATGCTTCCG TCGCGCCAAAGCATTTGCGGGGGATATAACTTGCCAATTGATGGCTGCAC GGGCAGTGGAGGAGGAAGACTTACTGGAGGAAATCCAACATGACGTAGGC CGGGTTGCCTCCGCGCCGAGCAAGGCCATCTTCTTCGGCGCGGAGCTGGA TTGGAACCGTTGCATTCGGTTCACGTTTCTTGGAGCGGCGCTTGTTGCAC CCGCCTTGCACTACTGGGTGAGTGGGTGAGTAGCAGAGTCCCCAGCTACT AAATATTGCAGATCTTCATTCGCAAGAGGCATATTTCTACTGGTCGTCTC TCAAGTGTTTACACACACCGTAGAGAGTTGTGGTTCGATATTTGTTATTA TTGCTGACGAGTGGAACTCCTTTGCTGTGGCCCAACGTCGTTTGCTTCCT TTTCAGTATGGGTTTTTGCTTCGGAAGTTCCCGGGGACCGCTATACCCAC GGTGGTGAAAAGGGTCTCCCTGGACCAACTGGTATTCACGCCCGTATTTC TGGCGACATTTCTGTCGGCCATCATGGTAATCGATGGCAACGCAGCTAAG GTAAGAAAATGCGGCTTGAGCGCTTCGCGAGAAATGTCAACCACTCAATC CCTTAAGAGACTGCAGTGTTTTACTCGGTACTAGACAGTAATCTCCATGC TGAAGCTGAATGACCTTGTGGGTGGTTTATCCGGCACCTTTTATTTTTCA ACATCTACTCCATCCATGGCAACTAAGCGTTCAAATAAGGGTTGGAAGAC AAACTGGCGCTACCAAAGCCTGCGGCTAAGAAGCAGAGATGGAAATAAAA CAAAGAATTTGTAAGCAGCTGATCTTGCGCCTTGAGACAAGATTGAAAGA TGCTATTATAACAATTTTTTACCACATCAGCACATCACGCTTGTTGGCCA TCTCTTTTCCGATGCATTGTTCTTGTTTATAAATCTGTCAGGTGGCTCCT AAGCTCCGCGCTGACTATCCTGCGACATTGGTGGGAAACTGGGGATACTG GATTCCTCTACAGATAATCAACTTCCGCTTCGTCAGCCCTCCCTACCAGG TACTGTACGCAGTAATAGAGCTACGGATTATAGCGAGGCATGACCATGCT TTCCATCTAATACTGAGTCACCCCCGGCCGCCGATATTGCTGCAGCTTGT TATATTTCACAATTATGCGGAGGTCTTGCGCGGTCAGCAAATCTTCGTCA AGCATTGGCGCACCACAAACGGCAGCTGAACGAAGAGAGGCAGACAATAA TCCCCTGCGTTTGTCCTTTCCCTGGAGCTAATTTATCACGTGCGCGTTGC GGAGATTTGCCTTTCTGCCGCGTTCCCCATAAAAAAATAATATTTCGTAT TTCGGAAGGTATTGTTCGCCAACTGCGGCGGGTTCTTCTGGAACATCTAC TTGTCACACCAATCAAACAAGGGCTTGCAGGAGGCCTCCGTCGACACGCC TTCGTATCCACAAGATAGTTCTTAAAACGATCGCGCATGACTCATTCGTG GCACCGAGTATCTTAGATGTACACGATGGAAGGCTCCAAGCATGAAACAG CAGCGGATGCATGTTTTGGTCCTGTGAAGGAATTCGTGACAGAGATTATC GCGATTCTCGACCTCATCGCGCTGGACTACTTTTCCAGTCCGGCCAGCCC ACCACAAGAGTCACACGTGGGTGACGTCATCGGGGAATGCTTGACCCTAC CGCTATGGAGTTAGCCCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16799:4814..6884-

>mRNA_H-elongata_contig16799.4243.1 ID=mRNA_H-elongata_contig16799.4243.1|Name=mRNA_H-elongata_contig16799.4243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig16799:4814..6884- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCACGGGCAGTGGAGGAGGAAGACTTACTGGAGGAAATCCAACA
TGACGTAGGCCGGGTTGCCTCCGCGCCGAGCAAGGCCATCTTCTTCGGCG
CGGAGCTGGATTGGAACCGTTGCATTCGGTTCACGTTTCTTGGAGCGGCG
CTTGTTGCACCCGCCTTGCACTACTGGATGGCTGCACGGGCAGTGGAGGA
GGAAGACTTACTGGAGGAAATCCAACATGACGTAGGCCGGGTTGCCTCCG
CGCCGAGCAAGGCCATCTTCTTCGGCGCGGAGCTGGATTGGAACCGTTGC
ATTCGGTTCACGTTTCTTGGAGCGGCGCTTGTTGCACCCGCCTTGCACTA
CTGGTATGGGTTTTTGCTTCGGAAGTTCCCGGGGACCGCTATACCCACGG
TGGTGAAAAGGGTCTCCCTGGACCAACTGGTATTCACGCCCGTATTTCTG
GCGACATTTCTGTCGGCCATCATGGTAATCGATGGCAACGCAGCTAAGTA
TGGGTTTTTGCTTCGGAAGTTCCCGGGGACCGCTATACCCACGGTGGTGA
AAAGGGTCTCCCTGGACCAACTGGTATTCACGCCCGTATTTCTGGCGACA
TTTCTGTCGGCCATCATGGTAATCGATGGCAACGCAGCTAAGGTGGCTCC
TAAGCTCCGCGCTGACTATCCTGCGACATTGGTGGGAAACTGGGGATACT
GGATTCCTCTACAGATAATCAACTTCCGCTTCGTCAGCCCTCCCTACCAG
GTGGCTCCTAAGCTCCGCGCTGACTATCCTGCGACATTGGTGGGAAACTG
GGGATACTGGATTCCTCTACAGATAATCAACTTCCGCTTCGTCAGCCCTC
CCTACCAGGTATTGTTCGCCAACTGCGGCGGGTTCTTCTGGAACATCTAC
TTGTCACACCAATCAAACAAGGGCTTGCAGGAGGCCTCCGTCGACACGCC
TTCGTATCCACAAGATAGTTCTTAAGTATTGTTCGCCAACTGCGGCGGGT
TCTTCTGGAACATCTACTTGTCACACCAATCAAACAAGGGCTTGCAGGAG
GCCTCCGTCGACACGCCTTCGTATCCACAAGATAGTTCTTAA
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