mRNA_H-elongata_contig167955.4239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167955.4239.1
Unique NamemRNA_H-elongata_contig167955.4239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167955.4239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167955contigH-elongata_contig167955:163..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.5860221-CDS-H-elongata_contig167955:162..9001622929981.5860221-CDS-H-elongata_contig167955:162..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167955 163..900 +
1691679233.735576-CDS-H-elongata_contig167955:162..9001691679233.735576-CDS-H-elongata_contig167955:162..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167955 163..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167955.4239.1prot_H-elongata_contig167955.4239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167955 163..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167955.4239.1

>prot_H-elongata_contig167955.4239.1 ID=prot_H-elongata_contig167955.4239.1|Name=mRNA_H-elongata_contig167955.4239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
DFHDDLRSTIANLLTSHGRAILVQPQRGGTVDLFLRCVSAAAVAANSTSA
TAPPPLPPPISLPPGEGSAEAGEAGTVDTTFRRDEPPLDARIVRRFDNRV
WAMHLDYTGSVSCSGGGEADRGYSPDRHLPVLVELWCRERPRGQLAEEEG
RDSSTAASDNNILWIPPWPESMPEATEGSTAAASTAGRGYGAGGGAREGI
GGRGAGDVGQNAATEGAAAVEEAVNKEAGTERGKGGEKRELGNETR
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mRNA from alignment at H-elongata_contig167955:163..900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167955.4239.1 ID=mRNA_H-elongata_contig167955.4239.1|Name=mRNA_H-elongata_contig167955.4239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=738bp|location=Sequence derived from alignment at H-elongata_contig167955:163..900+ (Himanthalia elongata Himel1 dioecious)
GATTTCCACGACGACCTTAGGAGTACGATCGCCAATCTTTTGACGTCCCA
CGGGAGGGCAATCCTCGTGCAGCCACAGCGAGGAGGCACGGTAGATCTTT
TTCTTCGGTGCGTCTCCGCCGCTGCAGTCGCCGCCAACTCTACCTCCGCC
ACCGCTCCTCCTCCCCTTCCCCCTCCTATTTCTCTTCCGCCCGGCGAAGG
CTCTGCCGAGGCGGGCGAAGCCGGCACTGTCGACACTACGTTCCGGCGCG
ACGAGCCGCCGCTCGACGCCAGGATCGTCCGGCGCTTCGACAATCGCGTG
TGGGCCATGCATCTGGACTACACAGGAAGCGTTTCTTGCTCCGGTGGCGG
AGAAGCCGATCGCGGGTACTCGCCGGATCGACACCTACCGGTGTTGGTGG
AGCTGTGGTGCAGGGAGAGACCACGGGGTCAACTGGCGGAGGAAGAGGGA
CGAGACAGCTCGACGGCAGCGAGCGACAACAACATCCTTTGGATCCCCCC
CTGGCCAGAAAGTATGCCCGAGGCCACGGAGGGGTCTACCGCGGCGGCGT
CGACGGCAGGCCGTGGATACGGTGCTGGAGGGGGGGCGCGCGAGGGGATC
GGCGGACGCGGCGCTGGCGATGTCGGCCAGAACGCGGCGACAGAAGGGGC
GGCAGCGGTGGAGGAGGCCGTAAACAAGGAGGCAGGCACAGAAAGGGGGA
AAGGGGGAGAAAAACGAGAACTAGGAAACGAAACACGG
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Coding sequence (CDS) from alignment at H-elongata_contig167955:163..900+

>mRNA_H-elongata_contig167955.4239.1 ID=mRNA_H-elongata_contig167955.4239.1|Name=mRNA_H-elongata_contig167955.4239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig167955:163..900+ (Himanthalia elongata Himel1 dioecious)
GATTTCCACGACGACCTTAGGAGTACGATCGCCAATCTTTTGACGTCCCA
CGGGAGGGCAATCCTCGTGCAGCCACAGCGAGGAGGCACGGTAGATCTTT
TTCTTCGGTGCGTCTCCGCCGCTGCAGTCGCCGCCAACTCTACCTCCGCC
ACCGCTCCTCCTCCCCTTCCCCCTCCTATTTCTCTTCCGCCCGGCGAAGG
CTCTGCCGAGGCGGGCGAAGCCGGCACTGTCGACACTACGTTCCGGCGCG
ACGAGCCGCCGCTCGACGCCAGGATCGTCCGGCGCTTCGACAATCGCGTG
TGGGCCATGCATCTGGACTACACAGGAAGCGTTTCTTGCTCCGGTGGCGG
AGAAGCCGATCGCGGGTACTCGCCGGATCGACACCTACCGGTGTTGGTGG
AGCTGTGGTGCAGGGAGAGACCACGGGGTCAACTGGCGGAGGAAGAGGGA
CGAGACAGCTCGACGGCAGCGAGCGACAACAACATCCTTTGGATCCCCCC
CTGGCCAGAAAGTATGCCCGAGGCCACGGAGGGGTCTACCGCGGCGGCGT
CGACGGCAGGCCGTGGATACGGTGCTGGAGGGGGGGCGCGCGAGGGGATC
GGCGGACGCGGCGCTGGCGATGTCGGCCAGAACGCGGCGACAGAAGGGGC
GGCAGCGGTGGAGGAGGCCGTAAACAAGGAGGCAGGCACAGAAAGGGGGA
AAGGGGGAGAAAAACGAGAACTAGGAAACGAAACACGGGATTTCCACGAC
GACCTTAGGAGTACGATCGCCAATCTTTTGACGTCCCACGGGAGGGCAAT
CCTCGTGCAGCCACAGCGAGGAGGCACGGTAGATCTTTTTCTTCGGTGCG
TCTCCGCCGCTGCAGTCGCCGCCAACTCTACCTCCGCCACCGCTCCTCCT
CCCCTTCCCCCTCCTATTTCTCTTCCGCCCGGCGAAGGCTCTGCCGAGGC
GGGCGAAGCCGGCACTGTCGACACTACGTTCCGGCGCGACGAGCCGCCGC
TCGACGCCAGGATCGTCCGGCGCTTCGACAATCGCGTGTGGGCCATGCAT
CTGGACTACACAGGAAGCGTTTCTTGCTCCGGTGGCGGAGAAGCCGATCG
CGGGTACTCGCCGGATCGACACCTACCGGTGTTGGTGGAGCTGTGGTGCA
GGGAGAGACCACGGGGTCAACTGGCGGAGGAAGAGGGACGAGACAGCTCG
ACGGCAGCGAGCGACAACAACATCCTTTGGATCCCCCCCTGGCCAGAAAG
TATGCCCGAGGCCACGGAGGGGTCTACCGCGGCGGCGTCGACGGCAGGCC
GTGGATACGGTGCTGGAGGGGGGGCGCGCGAGGGGATCGGCGGACGCGGC
GCTGGCGATGTCGGCCAGAACGCGGCGACAGAAGGGGCGGCAGCGGTGGA
GGAGGCCGTAAACAAGGAGGCAGGCACAGAAAGGGGGAAAGGGGGAGAAA
AACGAGAACTAGGAAACGAAACACGG
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