mRNA_H-elongata_contig16791.4236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16791.4236.1
Unique NamemRNA_H-elongata_contig16791.4236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16791.4236.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.560e-56
Identity = 98/232 (42.24%), Postives = 139/232 (59.91%), Query Frame = 1 
Query:   70 VVISMTNKDKHALPVGEDCPWSHGRGIALPNERNLCGTVGHAPIKGETDLWRCMKETNCGIVDDRLQMVVLRDPRAVAVSSYYHI---DREHQKMNQTVDDFSVAFLPITCMWVTLRFLLFEGILSGQSTVYWYEDAYEDPLGWHRQFLYSVGLNLP----DAVVSEATHRSVQGGNIMNFPAKGIDRHDGGEQAAMGRSFRDEVMPKTLLKMDHILRLWLPPVLLMKFGIP 744
            V IS++  DKH LPV E CPWSHG G    +E + C +    P++   DLW CM++T C I D+RLQ V +RDPRAVAVS+Y+H    D  +QK++ ++D   +  LP+ C + TLR +LF G+LS ++ ++WYE   EDP  WH ++    GL LP    D +V+E            N   K ++ H GG + +  R+++DEV P    +MD ILR WLP VLL ++GIP
Sbjct:    5 VEISISTVDKHRLPVNESCPWSHGSGTV--HEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAE------------NQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIP 222
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BLAST of mRNA_H-elongata_contig16791.4236.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.610e-54
Identity = 98/258 (37.98%), Postives = 149/258 (57.75%), Query Frame = 1 
Query:    1 LIFEPHM------AAGDEEKSCECKSVESVVISMTNKDKHALPVGEDCPWSHGRGIALPNERNLCGTVGHAPIKGETDLWRCMKETNCGIVDDRLQMVVLRDPRAVAVSSYYHIDREHQKM-----NQTVDDFSVAFLPITCMWVTLRFLLFEGILSGQSTVYWYEDAYEDPLGWHRQFLYSVGLNLPDAVVSEATHRSVQGGNIMNFPAKGIDRHDGGEQAAMGRSFRDEVMPKTLLKMDHILRLWLPPVLLMKFGI 741
             +F+P+       A G     C C +V+ V I +++  KH LPV   CPW H   +   N+   C TV    +   TD   C+++  C IVDDR+QM++LRDPRAVAVSS++H+   H        +++VD F +  LP  C ++ LR+L+    L G++  + Y+++  DPL WH+++L SVGL  P  VV +AT+ S++      F  KG+D+H GG++A   R++ DE+      +++ I R WLPPVLL KFGI
Sbjct:  169 FVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKG--CTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLR--REYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422
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BLAST of mRNA_H-elongata_contig16791.4236.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.440e-34
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 1 
Query:  250 IVDDRLQMVVLRDPRAVAVSSYYHIDR------EHQKMNQTVDDFSVAFLPITCMWVTLRFLLFEGILSGQSTVYWYEDAYEDPLGWHRQFLYSVGLNLP-------DAVVSEATHRSVQGGNIMNFPAKGIDRHDGGEQAAMGRSFRDEVMPKTLLKMDHILRLWLPPVLLMKFGIP 744
            ++DD LQ  VLRDPRAVAVS+Y+++        +H    +++D+  +  LP  C + T+R LLF+G LS +S ++WYEDA  DPLGWH ++    G  LP       DA + EA  +  +            D H GG+Q +  R++ DE+ P    +MD ILR WLP VLL + GIP
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKR------------DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIP 190
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BLAST of mRNA_H-elongata_contig16791.4236.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.120e-30
Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = 1 
Query:  280 LRDPRAVAVSSYYHIDRE-----HQKMNQTVDDFSVAFLPITCMWVTLRFLLFEGILSGQSTVYWYEDAYEDPLGWHRQFLYSVGLNLPDAVVSEATHRSVQGGNIMNFPAKGIDRHDGGEQAAMGRSFRDEVMPKTLLKMDHILRLWLPPVLLMKFGIPS 747
            +RDPRAVAVS+Y++I R      H    +++D+  V  LP  C + T+R +LF+G LS +S ++WYEDA  DPLGW+ ++    G  LP   + +      +         +  + H GG+  +  R++ DEV P+T L+M+ ILR WLP VLL +F +P+
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAEND----RKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPA 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16791.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KDV7_9PHAE2.560e-5642.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE4_ECTSI1.610e-5437.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG38_9PHAE3.440e-3439.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI1.120e-3037.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16791contigH-elongata_contig16791:47..1366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16791.4236.1prot_H-elongata_contig16791.4236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16791 65..1366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.1521158-UTR-H-elongata_contig16791:46..641622929981.1521158-UTR-H-elongata_contig16791:46..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16791 47..64 +
1691679233.473343-UTR-H-elongata_contig16791:46..641691679233.473343-UTR-H-elongata_contig16791:46..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16791 47..64 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.1723986-CDS-H-elongata_contig16791:64..1141622929981.1723986-CDS-H-elongata_contig16791:64..114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16791 65..114 +
1691679233.4825833-CDS-H-elongata_contig16791:64..1141691679233.4825833-CDS-H-elongata_contig16791:64..114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16791 65..114 +
1622929981.1956692-CDS-H-elongata_contig16791:684..13661622929981.1956692-CDS-H-elongata_contig16791:684..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16791 685..1366 +
1691679233.4919603-CDS-H-elongata_contig16791:684..13661691679233.4919603-CDS-H-elongata_contig16791:684..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16791 685..1366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16791.4236.1

>prot_H-elongata_contig16791.4236.1 ID=prot_H-elongata_contig16791.4236.1|Name=mRNA_H-elongata_contig16791.4236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
MAAGDEEKSCECKSVESVVISMTNKDKHALPVGEDCPWSHGRGIALPNER
NLCGTVGHAPIKGETDLWRCMKETNCGIVDDRLQMVVLRDPRAVAVSSYY
HIDREHQKMNQTVDDFSVAFLPITCMWVTLRFLLFEGILSGQSTVYWYED
AYEDPLGWHRQFLYSVGLNLPDAVVSEATHRSVQGGNIMNFPAKGIDRHD
GGEQAAMGRSFRDEVMPKTLLKMDHILRLWLPPVLLMKFGIPS*
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mRNA from alignment at H-elongata_contig16791:47..1366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16791.4236.1 ID=mRNA_H-elongata_contig16791.4236.1|Name=mRNA_H-elongata_contig16791.4236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1320bp|location=Sequence derived from alignment at H-elongata_contig16791:47..1366+ (Himanthalia elongata Himel1 dioecious)
CTCATATTCGAGCCTCATATGGCGGCTGGCGATGAAGAGAAGTCCTGCGA
GTGCAAAAGTGTGGAAAGGTGAGGGCTGTACCGAAGGGCAGGCGGTGGTA
GCGACGACAATAAAAAAGCGTATATTGCCGTGAGTTCAGATATTTTGAGA
GTAAATATTGTAATGAGCCCCCCCCCTCCCCGAGTCTACTAAACTGTACG
TAGGGAGGAGCTTTGGGGTAAATCATTCACGAGGCGCACTTCATGACCAA
CGCTCACCTTTCCAAATTTCTTAACCCATATCGTCCTAATATTTAGTTCA
ATTTCATGTCCCGTTTGAGTAATGAGGTAGTAGACACGACTTTCCCTTTC
ATCCTCGAAGTTGTGATGCGCGACATACCCCCCACCATGCATTATCTGCA
TGGAACCCTCCATAATAGATATTTCAATACATAAAACGTTTGCATGGTCA
GTTGGCACGTGTCTATCCACCAGCGCCGTGGTCTTCTAAGAGCGGACTTC
TACTTTACGTGGTTCCTCTCGCCATCTACCCCCGCTTGCCCCCGACCCCC
CCTAGAATTTCTGGGAAAATGCACCACATTCAATGAAAGATTCGAAACAA
AACGGCTGACAGCGTGATGTCGCTCCCTCCCTCTCCAGCGTGGTCATCTC
GATGACCAACAAAGACAAGCATGCGCTGCCGGTCGGGGAGGACTGCCCCT
GGTCACATGGTCGCGGCATAGCGCTACCAAATGAGCGCAACCTCTGCGGC
ACCGTCGGGCACGCCCCGATAAAGGGCGAGACGGACCTATGGCGCTGCAT
GAAAGAGACTAATTGTGGCATCGTGGACGACCGCTTGCAAATGGTAGTCC
TGCGCGATCCGAGGGCGGTCGCGGTCAGCTCTTACTACCATATCGACCGC
GAGCACCAGAAGATGAATCAAACTGTAGACGACTTTTCGGTGGCCTTCCT
ACCGATCACGTGCATGTGGGTCACCCTGCGCTTCCTCCTCTTCGAAGGCA
TACTCTCGGGGCAGTCCACGGTGTACTGGTACGAAGATGCGTATGAGGAT
CCACTCGGCTGGCACCGCCAATTCCTGTACTCCGTTGGACTGAATTTGCC
GGATGCTGTGGTCTCGGAGGCCACGCACAGATCTGTTCAGGGGGGAAATA
TCATGAATTTCCCGGCGAAGGGTATCGATAGACACGACGGGGGGGAGCAG
GCAGCGATGGGTCGTTCATTCCGAGATGAGGTTATGCCTAAGACGCTCTT
GAAGATGGATCACATTCTGCGTTTGTGGTTGCCGCCCGTGCTCTTGATGA
AATTTGGTATCCCTTCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16791:47..1366+

>mRNA_H-elongata_contig16791.4236.1 ID=mRNA_H-elongata_contig16791.4236.1|Name=mRNA_H-elongata_contig16791.4236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig16791:47..1366+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCTGGCGATGAAGAGAAGTCCTGCGAGTGCAAAAGTGTGGAAAG
ATGGCGGCTGGCGATGAAGAGAAGTCCTGCGAGTGCAAAAGTGTGGAAAG
CGTGGTCATCTCGATGACCAACAAAGACAAGCATGCGCTGCCGGTCGGGG
AGGACTGCCCCTGGTCACATGGTCGCGGCATAGCGCTACCAAATGAGCGC
AACCTCTGCGGCACCGTCGGGCACGCCCCGATAAAGGGCGAGACGGACCT
ATGGCGCTGCATGAAAGAGACTAATTGTGGCATCGTGGACGACCGCTTGC
AAATGGTAGTCCTGCGCGATCCGAGGGCGGTCGCGGTCAGCTCTTACTAC
CATATCGACCGCGAGCACCAGAAGATGAATCAAACTGTAGACGACTTTTC
GGTGGCCTTCCTACCGATCACGTGCATGTGGGTCACCCTGCGCTTCCTCC
TCTTCGAAGGCATACTCTCGGGGCAGTCCACGGTGTACTGGTACGAAGAT
GCGTATGAGGATCCACTCGGCTGGCACCGCCAATTCCTGTACTCCGTTGG
ACTGAATTTGCCGGATGCTGTGGTCTCGGAGGCCACGCACAGATCTGTTC
AGGGGGGAAATATCATGAATTTCCCGGCGAAGGGTATCGATAGACACGAC
GGGGGGGAGCAGGCAGCGATGGGTCGTTCATTCCGAGATGAGGTTATGCC
TAAGACGCTCTTGAAGATGGATCACATTCTGCGTTTGTGGTTGCCGCCCG
TGCTCTTGATGAAATTTGGTATCCCTTCGTAACGTGGTCATCTCGATGAC
CAACAAAGACAAGCATGCGCTGCCGGTCGGGGAGGACTGCCCCTGGTCAC
ATGGTCGCGGCATAGCGCTACCAAATGAGCGCAACCTCTGCGGCACCGTC
GGGCACGCCCCGATAAAGGGCGAGACGGACCTATGGCGCTGCATGAAAGA
GACTAATTGTGGCATCGTGGACGACCGCTTGCAAATGGTAGTCCTGCGCG
ATCCGAGGGCGGTCGCGGTCAGCTCTTACTACCATATCGACCGCGAGCAC
CAGAAGATGAATCAAACTGTAGACGACTTTTCGGTGGCCTTCCTACCGAT
CACGTGCATGTGGGTCACCCTGCGCTTCCTCCTCTTCGAAGGCATACTCT
CGGGGCAGTCCACGGTGTACTGGTACGAAGATGCGTATGAGGATCCACTC
GGCTGGCACCGCCAATTCCTGTACTCCGTTGGACTGAATTTGCCGGATGC
TGTGGTCTCGGAGGCCACGCACAGATCTGTTCAGGGGGGAAATATCATGA
ATTTCCCGGCGAAGGGTATCGATAGACACGACGGGGGGGAGCAGGCAGCG
ATGGGTCGTTCATTCCGAGATGAGGTTATGCCTAAGACGCTCTTGAAGAT
GGATCACATTCTGCGTTTGTGGTTGCCGCCCGTGCTCTTGATGAAATTTG
GTATCCCTTCGTAA
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