mRNA_H-elongata_contig16779.4229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16779.4229.1
Unique NamemRNA_H-elongata_contig16779.4229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 6.500e-133
Identity = 364/880 (41.36%), Postives = 422/880 (47.95%), Query Frame = 1 
Query:    1 GDFWAEEAVRLARTVDRKDDAVEDGQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLSKA-------------RVP-------------------------------------------------TPGKTSIPWAHDAIGPLSQLARKTWAAHSVRAARAVGTLPTMQEGTLSEPGMPATLAPSRSTSSGGGSELGGEGSG--------------TPGPERLSRSGSTSVMSVSEFYGPSGARMLQRRGSSASHASLVDSYGEGE---------------ASLSRLITSGGGEQQQPHRKQNYKTLANASSGEAGEGSLGVTPSVS----QTSP-AVAVAVPSNPWSNLSWPGQPTAPKSSSALLPRNGEGATADTPRTEAAAEIPVHTTAPATAPLSEAGAGAEASTGAVSAPQAKRAPRASPKQPSPPATMTVTASQATAMETTPNPLTATTVSAATGSISSFTSRQVLPPPLTLEAPHP-------------------------------------ASRASTSTSTASLPWVNTPVSTFAAPGVVGDA-------RNAGQRHGGIQRTLSVDSG------------FCGSVFTSASACSSVAPITTSLARSVSNPNPAGGTRSA-----ASGG----------------------------------------------------IVHSPRLRAKSIDASGGKKKGKSKKGKKGPGSAVMGKADKIGRMLQSLSRAVTRISKDLLVVSLGEHDRAAKPSPVRGQSAATAKSIMADLEAWHASSGLEGVLTPDCHDPDPPISRALVDARHTFLEMCQ 2013
            GDFWAEEAVRLAR V+R+DD  ++ Q PLELCR ALEELIRHQ GAPFTAPVDPTRDRCPDYL+VI+QPMDLGTVAE LDAM+YHDAG+FV DVRLIFDNARKYNPPKHPIHVAASKL+K              R+P                                                  PGK SIPWA DAIGPLS LARKTWAAHS R ARAVGTLP M E +  E GMPAT+   R  S  GG+  G                   + G ERLSRSGST+VMSVSEFYGPSGARMLQRR S+AS  SL DSYG+GE               A+L+ LI+       +P  +Q + T +N    +A       TPS +    QTSP  V    P + WS L+WP  P   +   AL P    G+        AA   P   T+P  A                                                                            PPPLTLE PHP                                     A  ++   S+ SLPW+  P +                  +   QR  G+ R +SVDS             F G     AS+ S    I         N N +GG+ S+       GG                                                     VHSPRLRAKS+D+ G  +KGK+K+GK GPG+AVMGKAD+IGRMLQSLSRAVTRISKDLLVVSLG+ D+ AKP P R  S  T ++++A+LEAWHASSG+EG LTPDCHDPDPPISRALVDARHTFLEMCQ
Sbjct: 1623 GDFWAEEAVRLARAVERRDDGQDETQSPLELCRQALEELIRHQHGAPFTAPVDPTRDRCPDYLVVIEQPMDLGTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKVFDKTVRALESAVNRLPGMHEMGLEHLLLEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPGKRSIPWAFDAIGPLSALARKTWAAHSARTARAVGTLPPMSESSPVEVGMPATVPSCRGLS--GGATCGXXXXXXXXXXXXXXDAPPHSNGGERLSRSGSTAVMSVSEFYGPSGARMLQRRSSTASQLSLADSYGDGETLESVGAMREDREGQAALTSLIS-------EPLPQQ-HVTGSNGGVAQAQP-----TPSAAAAPQQTSPPTVGAPAPPSVWSTLTWP--PGQQQQQQALGPSAAVGS-----GEAAAGNAPSGLTSPVEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------XXXXXXXXXXXXXXGSPPPLTLEPPHPSAANGAAAIVSVLNPASAXXXXXXXXXXXXXQAANAAAGGSARPASSKSLPWITAPGAXXXXXXXXXXXXXXXXXDQQQNQR-AGLIRAMSVDSAPSPARPHARSLSFTGGGLGQASSGSEAFGI---------NVNKSGGSGSSLGRLTVGGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXPTVHSPRLRAKSMDSGG--RKGKTKRGK-GPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVSLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQ 2438
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: D7FK58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK58_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 3.760e-128
Identity = 309/705 (43.83%), Postives = 359/705 (50.92%), Query Frame = 1 
Query:    1 GDFWAEEAVRLARTVDRKDDAVEDGQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLSKARVPTPGKTSIPWAHDAIGPLSQLARKTWAAHSVRAARAVGTLPTMQEGTLSEPGMPATLAPSRSTSSGGGSELGGE----------GSGTP----GPERLSRSGSTSVMSVSEFYGPSGARMLQRRGSSASHASLVDSYGEGEASLSRLITSGGGEQQQPHRKQNYKTLANASSGEAGEGSLGVTPSVSQTSPAVAVAVP------------------SNPWSNLS--WPGQPTAPKSSSALLPRNGEGATADTPRTEAAAEIPVHTTAPATAPLSEAGAGAEASTGAVSAPQAKRAPRASPKQPSPPATMTVTASQATAMETTPNPLTATTVSAATGSISSFTSRQVLPPPLTLEAPHPASRASTSTSTASLPWVNTPVSTFAAPGVVGDARNAGQRHGGIQRTLSVDSGFCGSVFTSASACSSVAPITTSLARSVSNPNPAGGTRSAASGGIVHSPRLRAKSIDASGGKKKGKSKKGKKGPGSAVMGKADKIGRMLQSLSRAVTRISKDLLVVSLGEHDRAAKPSPVRGQSAATAKSIMADLEAWHASSGLEGVLTPDCHDPDPPISRALVDARHTFLEMCQ 2013
            GDFWAEEAVRLAR V+R+DD  ++ Q PLELCR ALEELIRHQ GAPFTAPVDPTRDRCPDYL+VI+QPMDLGTVAE LDAM+YHDAG+FV DVRLIFDNARKYNPPKHPIHVAASKL+K                           TWAAHS R  RAVGTLP M E +  E GMPAT+   R  S  GG+  G             +  P    G ERLSRSGST+VMSVSEFYGPSGARMLQRR S+AS  SL DSYGEGE   S   T       + +R+      +  S   + +   G    V+Q  PA A                      + P S++S  W   P A            E    D  + + A  I                                                     +A ++++ P+P                              PH  S + T                       G    A    GG     S  S   G    + S                       G      G  VHSPRLRAKS+D+ G  +KGKSK+GK GPG+AVMGKAD+IGRMLQSLSRAVTRISKDLLVV+LG+ D+ AKP P R  S  T ++++A+LEAWHASSG+EG LTPDCHDPDPPISRALVDARHTFLEMCQ
Sbjct:   30 GDFWAEEAVRLARAVERRDDGQDETQSPLELCRQALEELIRHQHGAPFTAPVDPTRDRCPDYLMVIEQPMDLGTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAK---------------------------TWAAHSARTTRAVGTLPPMSESSPVEVGMPATVPSCRGLS--GGATCGXXXXXXXXXXXXATDAPPHSNGGERLSRSGSTAVMSVSEFYGPSGARMLQRRSSTASQLSLADSYGEGETLESASAT-------RENREGQAALTSLISEPLSQQHVAGSNGGVAQAQPAPAXXXXXXXXXXXXXXXXXXXGGSARPASSMSLPWITAPGAXXXXXXXXXLTEERMPEDQQQNQRAGLI-----------------------------------------------------RAMSVDSAPSPA----------------------------RPHARSLSFT-----------------------GSGGGASDGLGGGLGQASSGSEAFGIKMNNKSGXXXXXXXXXXXXXXXXXXXXXDG------GPTVHSPRLRAKSMDSGG--RKGKSKRGK-GPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQ 585
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A7S2B241_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B241_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.710e-26
Identity = 58/118 (49.15%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:    1 GDFWAEEAVRLARTVDRKDDAVEDGQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKL 354
            GD+W +EAVRL     R+   + D    ++ C+  L  L  H     F  PVDP     PDYL VIKQPMDL TVA KL   +YH     + DVRL+F NA+KYNPPKHP+HVAA  L
Sbjct:   94 GDYWIDEAVRLFGIRQRRKVTLSDNASAMQQCQAFLRTLRLHPSAHAFDTPVDPVALMIPDYLTVIKQPMDLSTVANKLRTGQYHMVKDMIADVRLVFSNAKKYNPPKHPVHVAACTL 211
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.870e-25
Identity = 65/121 (53.72%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 GDFWAEEAVRLARTVDRKDDA--VEDGQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLS 357
            GD+W +E  RL R V+RK DA  V D   P ELCR ALE +    Q A F  PVDP   +C DY  VIK PMDLG VA KL    Y  A +F  DVRL+F N   YNPPKHP+HVAA  L+
Sbjct:  632 GDYWLDEIQRLLRLVERKSDADFVTDRMSPTELCRGALEAVTVLPQAAAFMEPVDPFAHQCADYFDVIKHPMDLGAVAAKLAGGEYATAEAFADDVRLVFANGVTYNPPKHPVHVAARALA 752
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A7S2C9K0_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.460e-18
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 GDFWAEEAVRLARTVDRKDDAVEDGQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKL 354
            GD+W +EAVRL     R+   + +    L+ C   L  L  H     F  PVDP     PDY +VI QPMDLGT+ +KL   +Y      + D+ L+  NAR+YNPPKHP+HVAA  L
Sbjct:  869 GDYWIDEAVRLYALRQRRKVTLGESASVLQQCEGLLRSLRLHPSARAFNQPVDPEALNIPDYRIVITQPMDLGTIEDKLRQGQYMTVRDMLNDMMLVVANARRYNPPKHPVHVAAKTL 986
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A7S0IU34_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IU34_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 1.090e-17
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   61 AVEDGQCPLELCRNALEELIRHQQGA-PFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLS 357
            A++D Q  +  C N L +L+ H   A PF+ PVDP     PDY  +IK+PMDLGT+AEKL +  Y D+G FV DVRL++ NARKYN    PIH  A++LS
Sbjct:  282 AIKDVQLTMRQC-NTLHQLLMHMPKAEPFSQPVDPVALNIPDYPRIIKEPMDLGTIAEKLSSFAYKDSGEFVQDVRLVWANARKYNAKDTPIHSDAAQLS 380
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A7S1GYD1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GYD1_HEMAN)

HSP 1 Score: 92.8 bits (229), Expect = 2.190e-17
Identity = 49/94 (52.13%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   73 GQCPLELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKL 354
            G  P E  R  L+ L +  Q  PF  PVDP  D CPDY   I  PMDLGTV  +LD   Y     F  DVR  FDNA  YNPPKHP+H+AA KL
Sbjct:  109 GDWPYEY-RLLLKRLSKSPQSQPFLRPVDPQADHCPDYPQRIPSPMDLGTVQARLDQSLYLSPEEFGEDVRRTFDNAMSYNPPKHPVHIAAKKL 201
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: UPI00103637B8 (transcription factor GTE8-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103637B8)

HSP 1 Score: 92.4 bits (228), Expect = 5.410e-17
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   85 LELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLSK 360
            +E C+  L++L++HQ G  F  PVD  +   PDYL VIK PMDLGT+  K+ +  Y  A  FV DVRL F  A  YNPP +  H+ A  LSK
Sbjct:  117 IEQCKTLLKKLMQHQYGWVFNTPVDVVKSNIPDYLTVIKHPMDLGTIKSKIASSEYSSALEFVADVRLTFSKAMTYNPPGNDFHIIADTLSK 208
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: A0A4S4EDX1_CAMSI (Uncharacterized protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EDX1_CAMSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.720e-17
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   85 LELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLSK 360
            +E C+  L++L++HQ G  F  PVD  +   PDYL VIK PMDLGT+  K+ +  Y  A  FV DVRL F NA  YNPP +  H+ A  LSK
Sbjct:  107 IEQCKTLLKKLMQHQYGWVFNTPVDAVKLNIPDYLTVIKHPMDLGTIKSKIASSEYSSALEFVADVRLTFSNAMTYNPPGNDFHIIADTLSK 198
[Close]
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Match: UPI000900CCC0 (transcription factor GTE8 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900CCC0)

HSP 1 Score: 94.4 bits (233), Expect = 2.590e-16
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   85 LELCRNALEELIRHQQGAPFTAPVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDNARKYNPPKHPIHVAASKLSK 360
            L+ C N L++L+ HQ G  F  PVD  + + PDYL+VIKQPMDLGT+ +KL + +Y     F+ DVRL F NA  YNPP + +H  A  +SK
Sbjct:  177 LKQCENLLKKLMTHQHGWVFNEPVDVVKLKIPDYLIVIKQPMDLGTIKKKLSSGQYSSPLDFLADVRLTFSNAMTYNPPGNDVHFMADTMSK 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16779.4229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V8_9PHAE6.500e-13341.36Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
D7FK58_ECTSI3.760e-12843.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B241_9STRA4.710e-2649.15Histone acetyltransferase (Fragment) n=1 Tax=Flore... [more]
A0A835ZGH1_9STRA7.870e-2553.72Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A7S2C9K0_9STRA1.460e-1843.22Histone acetyltransferase (Fragment) n=1 Tax=Dicty... [more]
A0A7S0IU34_9EUKA1.090e-1751.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S1GYD1_HEMAN2.190e-1752.13Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI00103637B85.410e-1747.83transcription factor GTE8-like n=1 Tax=Camellia si... [more]
A0A4S4EDX1_CAMSI6.720e-1748.91Uncharacterized protein n=3 Tax=Camellia sinensis ... [more]
UPI000900CCC02.590e-1648.91transcription factor GTE8 n=2 Tax=Ipomoea TaxID=41... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16779contigH-elongata_contig16779:248..3987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.0
Seed ortholog evalue3.2e-116
Seed eggNOG ortholog2880.D7FK58
KEGG koko:K11798
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size2031
Cds size2031
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16779.4229.1prot_H-elongata_contig16779.4229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16779 248..3987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.912601-CDS-H-elongata_contig16779:247..5201622929979.912601-CDS-H-elongata_contig16779:247..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 248..520 -
1691679232.9902713-CDS-H-elongata_contig16779:247..5201691679232.9902713-CDS-H-elongata_contig16779:247..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 248..520 -
1622929979.9259977-CDS-H-elongata_contig16779:947..22641622929979.9259977-CDS-H-elongata_contig16779:947..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 948..2264 -
1691679233.0026503-CDS-H-elongata_contig16779:947..22641691679233.0026503-CDS-H-elongata_contig16779:947..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 948..2264 -
1622929979.9489865-CDS-H-elongata_contig16779:2531..25991622929979.9489865-CDS-H-elongata_contig16779:2531..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 2532..2599 -
1691679233.0127475-CDS-H-elongata_contig16779:2531..25991691679233.0127475-CDS-H-elongata_contig16779:2531..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 2532..2599 -
1622929979.9830139-CDS-H-elongata_contig16779:2957..31121622929979.9830139-CDS-H-elongata_contig16779:2957..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 2958..3112 -
1691679233.0213408-CDS-H-elongata_contig16779:2957..31121691679233.0213408-CDS-H-elongata_contig16779:2957..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 2958..3112 -
1622929980.001-CDS-H-elongata_contig16779:3413..35331622929980.001-CDS-H-elongata_contig16779:3413..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 3414..3533 -
1691679233.029273-CDS-H-elongata_contig16779:3413..35331691679233.029273-CDS-H-elongata_contig16779:3413..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 3414..3533 -
1622929980.0171878-CDS-H-elongata_contig16779:3889..39871622929980.0171878-CDS-H-elongata_contig16779:3889..3987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 3890..3987 -
1691679233.037695-CDS-H-elongata_contig16779:3889..39871691679233.037695-CDS-H-elongata_contig16779:3889..3987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16779 3890..3987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16779.4229.1

>prot_H-elongata_contig16779.4229.1 ID=prot_H-elongata_contig16779.4229.1|Name=mRNA_H-elongata_contig16779.4229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=677bp
GDFWAEEAVRLARTVDRKDDAVEDGQCPLELCRNALEELIRHQQGAPFTA
PVDPTRDRCPDYLLVIKQPMDLGTVAEKLDAMRYHDAGSFVVDVRLIFDN
ARKYNPPKHPIHVAASKLSKARVPTPGKTSIPWAHDAIGPLSQLARKTWA
AHSVRAARAVGTLPTMQEGTLSEPGMPATLAPSRSTSSGGGSELGGEGSG
TPGPERLSRSGSTSVMSVSEFYGPSGARMLQRRGSSASHASLVDSYGEGE
ASLSRLITSGGGEQQQPHRKQNYKTLANASSGEAGEGSLGVTPSVSQTSP
AVAVAVPSNPWSNLSWPGQPTAPKSSSALLPRNGEGATADTPRTEAAAEI
PVHTTAPATAPLSEAGAGAEASTGAVSAPQAKRAPRASPKQPSPPATMTV
TASQATAMETTPNPLTATTVSAATGSISSFTSRQVLPPPLTLEAPHPASR
ASTSTSTASLPWVNTPVSTFAAPGVVGDARNAGQRHGGIQRTLSVDSGFC
GSVFTSASACSSVAPITTSLARSVSNPNPAGGTRSAASGGIVHSPRLRAK
SIDASGGKKKGKSKKGKKGPGSAVMGKADKIGRMLQSLSRAVTRISKDLL
VVSLGEHDRAAKPSPVRGQSAATAKSIMADLEAWHASSGLEGVLTPDCHD
PDPPISRALVDARHTFLEMCQASSFS*
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mRNA from alignment at H-elongata_contig16779:248..3987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16779.4229.1 ID=mRNA_H-elongata_contig16779.4229.1|Name=mRNA_H-elongata_contig16779.4229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3740bp|location=Sequence derived from alignment at H-elongata_contig16779:248..3987- (Himanthalia elongata Himel1 dioecious)
GGAGATTTCTGGGCTGAAGAGGCGGTGAGGCTGGCAAGGACCGTTGATCG
AAAGGACGACGCTGTCGAGGACGGGCAGTGTCCGCTAGAGCTCTGCAGGT
GAAAGAATGGAGAGAGTTCTACGTTTTATTGTATTTCTTATCCCAGCTGT
CTTGAGCGTAGTAAGACATCGTGGAGGAATATGGTAGCCCTTGTGTTCTA
AGCTAGGTGCCAAGCTGTTCTCTTGCCTCATCCAATGTGTGAGACGTTTG
AGCTTACCTCTCTTGACGGTTGTGCAATAGTCGACTTGGTCTCCAACACA
ATTCTACGTGGCGTCGCCTTGATCGAGGATAAGAATACCAAGGCTACCAC
ATATGTCTTCAAGGGTACAAAGCCGATGTAGGCTGAGTTTTTTAAAATCT
AAAACGTAGGAGTTTGTGTGTGTCTCTCCTTAATTTATCACGTCGGCTGC
GCAGGAATGCGCTGGAAGAGCTCATCCGCCATCAGCAGGGAGCGCCGTTC
ACGGCACCGGTGGACCCAACGAGGGACAGATGCCCTGACTACCTTCTTGT
GATCAAGCAGCCCATGGACCTCGGGTGACTAACAAATAACCCCCCCCCGG
CTCCGGTGAAGATGTACAGTTAGTACTAATTATGTTGGGGACTCTAATTT
GGATTTAACCATAGCTGCGATGTGAGGTTCAAGTGTGAGTCGAGGTTGCG
CAGCCTGTGTTTCCCCTGATTGTGGGCAGTGCAGGGATATGGAAACCCTT
GCCGAAGCGTGTTTCGCGGACGCGAGACTGTGATATTGCAAAAAAGCGAG
GTATTTCGATCCCACGGCACGTGTTTGTTCGGATATTGTTTCACTCATTG
GTTTGTTTACTTTTTGCTCTGGCAGCACCGTGGCAGAAAAGCTGGACGCC
ATGAGGTACCACGACGCGGGCTCTTTCGTAGTGGATGTGAGGCTAATCTT
CGACAACGCAAGGAAGTACAACCCGCCCAAGCACCCCATACACGTCGCCG
CTTCCAAACTTTCAAAGGCGAGAGTTCCGAGTTGCCTCTACTCGATCAGT
AAAGACTGTGGGGAGTGTGTTCTATCTGATCCCCTCGTTTCAATGACCCG
GCTTTTGTTTGTTCCTTCTCTATTTTTTCCAATTCTTCGTGGATAAGAGT
ATTTTTATTGACTTCCTCCTTGTCTGTGTGAAAAAATAGGTTTTCGACAA
GACCGTTAAGGCGTTAGAGGGTGCTGTCAATCGTCTCCCCGGCATGCACG
AGATGGGCTTGGAGCACCTTGTTCTTGAGGAACCAACGCCTCCAGCACCT
GAAACTCCCACGGTGGGGCCAACGCCGGCACCGGGAGCAGGGACAGGGGC
CAAAACCGGTGGAGCTGTTCCCACATTCAGGCCCACAGCACCCGGGAAAA
CTTCCATCCCTTGGGCCCACGACGCGATTGGTCCGCTGAGTCAGCTCGCT
CGGAAGGTGAAAAGGACGCTCAGCCAGATGATGATGGGTTGATAATGAAC
GCGTACGGCAGGCGTGCCTTCGAAGAGGATGATAAAATCATTGAATAGAT
AATCTATATTTTGGGTTATCTTACGTGTTTTGATATTACGCGTGTCCGCG
AGTGCTGTCCTCAACTCTCCCCCTTAGCCAATACGAGTTTATCTCGATGT
TGCTTATGTTTGATATATTCCCCTTTTTTCTCTGTTTTGCCCTTTTTTGC
TCTATTTTGCCCTTGTTCCGCAGACGTGGGCGGCACATTCGGTTCGTGCC
GCCAGAGCAGTTGGTACACTTCCGACGATGCAGGAAGGTACCCTGTCCGA
GCCGGGGATGCCCGCGACCCTCGCCCCGAGCCGGTCGACGAGCAGCGGGG
GCGGGTCGGAATTGGGTGGAGAGGGCAGCGGTACTCCCGGGCCTGAGAGA
CTCAGCAGATCCGGCTCGACCTCCGTAATGTCGGTGTCGGAGTTCTACGG
CCCCAGTGGGGCGCGTATGCTCCAACGCAGGGGATCCTCGGCGTCGCACG
CGTCGCTGGTGGATAGCTATGGGGAAGGAGAGGCTTCTCTGTCGCGGTTG
ATAACCTCAGGGGGAGGAGAGCAGCAGCAACCGCACAGAAAACAAAATTA
TAAGACCCTTGCTAATGCTTCTTCTGGAGAAGCGGGGGAGGGAAGTCTCG
GCGTAACCCCGTCCGTTTCGCAGACCAGCCCGGCTGTGGCTGTGGCTGTG
CCATCGAACCCTTGGTCCAATCTTTCGTGGCCCGGGCAACCAACAGCACC
AAAGTCTTCCAGCGCTCTGCTTCCTAGAAATGGCGAGGGGGCGACGGCGG
ACACACCAAGGACAGAGGCCGCTGCTGAAATACCTGTCCACACTACTGCA
CCAGCGACGGCGCCCTTGTCAGAGGCGGGGGCAGGGGCAGAGGCGTCGAC
CGGTGCAGTATCTGCACCACAGGCAAAAAGAGCGCCTCGCGCCTCGCCCA
AGCAACCTTCCCCACCGGCGACGATGACTGTGACAGCATCACAAGCAACG
GCAATGGAGACCACCCCGAATCCTCTGACTGCAACAACGGTATCTGCGGC
GACCGGTAGTATTTCGTCTTTCACGAGTCGCCAGGTGCTACCGCCTCCTC
TTACCCTTGAAGCGCCCCACCCTGCGTCCCGTGCCAGCACAAGCACTAGT
ACCGCCTCATTACCATGGGTGAATACCCCAGTTTCAACATTTGCGGCACC
AGGCGTCGTGGGCGATGCGCGGAACGCGGGTCAGCGCCATGGCGGGATTC
AGCGGACGTTGAGCGTGGACTCGGGCTTCTGTGGATCTGTCTTCACCTCT
GCGTCTGCATGTTCCTCCGTTGCCCCCATTACGACGAGTCTTGCGCGGAG
CGTAAGTAATCCGAACCCCGCCGGCGGCACTCGGTCGGCGGCGAGCGGTG
GCATAGTGCACAGTCCTCGGCTGCGGGCCAAGAGCATTGATGCCTCTGGT
GGTAAAAAGAAGGGCAAGAGCAAAAAGGGGAAGAAGGGCCCCGGATCCGC
CGTCATGGGAAAAGCTGACAAGATCGGCCGCATGCTCCAGGTAGGAGAGG
CTTATGTGCTTTTTGACGGGAGGGGTATTGCTCTCAAATGTTGAGGGGGG
TGTGTGTTTGAATCGCAGAAGAATATTGACTTCCTTGACCCCCGGAGTTC
CATTTCTCGATCAGTGGTTATCGTGAAGAGAAAGTATATTTTTACGGGTA
AAAAGTCCCTCGGGATAGACTGCGCCAACTGGTTGCACTTCTGGTGTCAA
CAAGCAGTGTGCTTTCAAATCAGTTGTAAGCTTGCCCCGATTCGCAATCC
CGTCCTTACCCCTTGGGTAGTTTATAATGTAAGATACATGATAAAATCTG
ATACGCATGTACTCGTGTTTGGGCGGTCACGTAAATATATGCGTTTGTTA
CACGATTTGTCTTGATCCATGAATTCGATGCGTCCGCTACGTATTCGTCA
CGTATCCACCTACGCAGTCTCTTTCCCGAGCGGTGACTCGCATCAGCAAG
GACCTCCTCGTTGTGTCTCTCGGGGAGCATGATCGGGCGGCAAAGCCTTC
CCCGGTCCGGGGTCAGTCCGCCGCAACGGCCAAGTCGATCATGGCGGATC
TGGAGGCGTGGCACGCCTCGTCGGGACTGGAAGGCGTTCTTACCCCAGAC
TGTCATGACCCGGACCCTCCGATCTCTCGAGCGCTGGTAGACGCGCGGCA
CACATTCCTGGAGATGTGTCAGGCGAGCTCTTTCTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16779:248..3987-

>mRNA_H-elongata_contig16779.4229.1 ID=mRNA_H-elongata_contig16779.4229.1|Name=mRNA_H-elongata_contig16779.4229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4062bp|location=Sequence derived from alignment at H-elongata_contig16779:248..3987- (Himanthalia elongata Himel1 dioecious)
GGAGATTTCTGGGCTGAAGAGGCGGTGAGGCTGGCAAGGACCGTTGATCG
AAAGGACGACGCTGTCGAGGACGGGCAGTGTCCGCTAGAGCTCTGCAGGG
AGATTTCTGGGCTGAAGAGGCGGTGAGGCTGGCAAGGACCGTTGATCGAA
AGGACGACGCTGTCGAGGACGGGCAGTGTCCGCTAGAGCTCTGCAGGAAT
GCGCTGGAAGAGCTCATCCGCCATCAGCAGGGAGCGCCGTTCACGGCACC
GGTGGACCCAACGAGGGACAGATGCCCTGACTACCTTCTTGTGATCAAGC
AGCCCATGGACCTCGGGAATGCGCTGGAAGAGCTCATCCGCCATCAGCAG
GGAGCGCCGTTCACGGCACCGGTGGACCCAACGAGGGACAGATGCCCTGA
CTACCTTCTTGTGATCAAGCAGCCCATGGACCTCGGCACCGTGGCAGAAA
AGCTGGACGCCATGAGGTACCACGACGCGGGCTCTTTCGTAGTGGATGTG
AGGCTAATCTTCGACAACGCAAGGAAGTACAACCCGCCCAAGCACCCCAT
ACACGTCGCCGCTTCCAAACTTTCAAAGGCGAGAGTTCCGACACCGTGGC
AGAAAAGCTGGACGCCATGAGGTACCACGACGCGGGCTCTTTCGTAGTGG
ATGTGAGGCTAATCTTCGACAACGCAAGGAAGTACAACCCGCCCAAGCAC
CCCATACACGTCGCCGCTTCCAAACTTTCAAAGGCGAGAGTTCCGACACC
CGGGAAAACTTCCATCCCTTGGGCCCACGACGCGATTGGTCCGCTGAGTC
AGCTCGCTCGGAAGCACCCGGGAAAACTTCCATCCCTTGGGCCCACGACG
CGATTGGTCCGCTGAGTCAGCTCGCTCGGAAGACGTGGGCGGCACATTCG
GTTCGTGCCGCCAGAGCAGTTGGTACACTTCCGACGATGCAGGAAGGTAC
CCTGTCCGAGCCGGGGATGCCCGCGACCCTCGCCCCGAGCCGGTCGACGA
GCAGCGGGGGCGGGTCGGAATTGGGTGGAGAGGGCAGCGGTACTCCCGGG
CCTGAGAGACTCAGCAGATCCGGCTCGACCTCCGTAATGTCGGTGTCGGA
GTTCTACGGCCCCAGTGGGGCGCGTATGCTCCAACGCAGGGGATCCTCGG
CGTCGCACGCGTCGCTGGTGGATAGCTATGGGGAAGGAGAGGCTTCTCTG
TCGCGGTTGATAACCTCAGGGGGAGGAGAGCAGCAGCAACCGCACAGAAA
ACAAAATTATAAGACCCTTGCTAATGCTTCTTCTGGAGAAGCGGGGGAGG
GAAGTCTCGGCGTAACCCCGTCCGTTTCGCAGACCAGCCCGGCTGTGGCT
GTGGCTGTGCCATCGAACCCTTGGTCCAATCTTTCGTGGCCCGGGCAACC
AACAGCACCAAAGTCTTCCAGCGCTCTGCTTCCTAGAAATGGCGAGGGGG
CGACGGCGGACACACCAAGGACAGAGGCCGCTGCTGAAATACCTGTCCAC
ACTACTGCACCAGCGACGGCGCCCTTGTCAGAGGCGGGGGCAGGGGCAGA
GGCGTCGACCGGTGCAGTATCTGCACCACAGGCAAAAAGAGCGCCTCGCG
CCTCGCCCAAGCAACCTTCCCCACCGGCGACGATGACTGTGACAGCATCA
CAAGCAACGGCAATGGAGACCACCCCGAATCCTCTGACTGCAACAACGGT
ATCTGCGGCGACCGGTAGTATTTCGTCTTTCACGAGTCGCCAGGTGCTAC
CGCCTCCTCTTACCCTTGAAGCGCCCCACCCTGCGTCCCGTGCCAGCACA
AGCACTAGTACCGCCTCATTACCATGGGTGAATACCCCAGTTTCAACATT
TGCGGCACCAGGCGTCGTGGGCGATGCGCGGAACGCGGGTCAGCGCCATG
GCGGGATTCAGCGGACGTTGAGCGTGGACTCGGGCTTCTGTGGATCTGTC
TTCACCTCTGCGTCTGCATGTTCCTCCGTTGCCCCCATTACGACGAGTCT
TGCGCGGAGCGTAAGTAATCCGAACCCCGCCGGCGGCACTCGGTCGGCGG
CGAGCGGTGGCATAGTGCACAGTCCTCGGCTGCGGGCCAAGAGCATTGAT
GCCTCTGGTGGTAAAAAGAAGGGCAAGAGCAAAAAGGGGAAGAAGGGCCC
CGGATCCGCCGTCATGGGAAAAGCTGACAAGATCGGCCGCATGCTCCAGA
CGTGGGCGGCACATTCGGTTCGTGCCGCCAGAGCAGTTGGTACACTTCCG
ACGATGCAGGAAGGTACCCTGTCCGAGCCGGGGATGCCCGCGACCCTCGC
CCCGAGCCGGTCGACGAGCAGCGGGGGCGGGTCGGAATTGGGTGGAGAGG
GCAGCGGTACTCCCGGGCCTGAGAGACTCAGCAGATCCGGCTCGACCTCC
GTAATGTCGGTGTCGGAGTTCTACGGCCCCAGTGGGGCGCGTATGCTCCA
ACGCAGGGGATCCTCGGCGTCGCACGCGTCGCTGGTGGATAGCTATGGGG
AAGGAGAGGCTTCTCTGTCGCGGTTGATAACCTCAGGGGGAGGAGAGCAG
CAGCAACCGCACAGAAAACAAAATTATAAGACCCTTGCTAATGCTTCTTC
TGGAGAAGCGGGGGAGGGAAGTCTCGGCGTAACCCCGTCCGTTTCGCAGA
CCAGCCCGGCTGTGGCTGTGGCTGTGCCATCGAACCCTTGGTCCAATCTT
TCGTGGCCCGGGCAACCAACAGCACCAAAGTCTTCCAGCGCTCTGCTTCC
TAGAAATGGCGAGGGGGCGACGGCGGACACACCAAGGACAGAGGCCGCTG
CTGAAATACCTGTCCACACTACTGCACCAGCGACGGCGCCCTTGTCAGAG
GCGGGGGCAGGGGCAGAGGCGTCGACCGGTGCAGTATCTGCACCACAGGC
AAAAAGAGCGCCTCGCGCCTCGCCCAAGCAACCTTCCCCACCGGCGACGA
TGACTGTGACAGCATCACAAGCAACGGCAATGGAGACCACCCCGAATCCT
CTGACTGCAACAACGGTATCTGCGGCGACCGGTAGTATTTCGTCTTTCAC
GAGTCGCCAGGTGCTACCGCCTCCTCTTACCCTTGAAGCGCCCCACCCTG
CGTCCCGTGCCAGCACAAGCACTAGTACCGCCTCATTACCATGGGTGAAT
ACCCCAGTTTCAACATTTGCGGCACCAGGCGTCGTGGGCGATGCGCGGAA
CGCGGGTCAGCGCCATGGCGGGATTCAGCGGACGTTGAGCGTGGACTCGG
GCTTCTGTGGATCTGTCTTCACCTCTGCGTCTGCATGTTCCTCCGTTGCC
CCCATTACGACGAGTCTTGCGCGGAGCGTAAGTAATCCGAACCCCGCCGG
CGGCACTCGGTCGGCGGCGAGCGGTGGCATAGTGCACAGTCCTCGGCTGC
GGGCCAAGAGCATTGATGCCTCTGGTGGTAAAAAGAAGGGCAAGAGCAAA
AAGGGGAAGAAGGGCCCCGGATCCGCCGTCATGGGAAAAGCTGACAAGAT
CGGCCGCATGCTCCAGTCTCTTTCCCGAGCGGTGACTCGCATCAGCAAGG
ACCTCCTCGTTGTGTCTCTCGGGGAGCATGATCGGGCGGCAAAGCCTTCC
CCGGTCCGGGGTCAGTCCGCCGCAACGGCCAAGTCGATCATGGCGGATCT
GGAGGCGTGGCACGCCTCGTCGGGACTGGAAGGCGTTCTTACCCCAGACT
GTCATGACCCGGACCCTCCGATCTCTCGAGCGCTGGTAGACGCGCGGCAC
ACATTCCTGGAGATGTGTCAGGCGAGCTCTTTCTCTTAATCTCTTTCCCG
AGCGGTGACTCGCATCAGCAAGGACCTCCTCGTTGTGTCTCTCGGGGAGC
ATGATCGGGCGGCAAAGCCTTCCCCGGTCCGGGGTCAGTCCGCCGCAACG
GCCAAGTCGATCATGGCGGATCTGGAGGCGTGGCACGCCTCGTCGGGACT
GGAAGGCGTTCTTACCCCAGACTGTCATGACCCGGACCCTCCGATCTCTC
GAGCGCTGGTAGACGCGCGGCACACATTCCTGGAGATGTGTCAGGCGAGC
TCTTTCTCTTAA
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