mRNA_H-elongata_contig167718.4227.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167718.4227.1
Unique NamemRNA_H-elongata_contig167718.4227.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.120e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            +R ALA DLN+ LP+APDVY FGK+I+RMARL L+ADELG+
Sbjct:  447 MRDALAADLNSVLPSAPDVYSFGKEISRMARLALVADELGD 487
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.130e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            +R ALA DLN+ LP+APDVY FGK+I+RMARL L+ADELG+
Sbjct:  447 MRDALAADLNSVLPSAPDVYSFGKEISRMARLALVADELGD 487
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A836CER9_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.310e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            +R  L +D++TE PTA D+YGF KQ ARMARL LIA+ELGE
Sbjct:  569 IRAELVKDISTEHPTAADIYGFSKQSARMARLALIAEELGE 609
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A850BQD1_9DELT (Endo-1,3(4)-beta-glucanase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BQD1_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            V+ AL  D + E+P A D Y FGKQIA++ RLVLIADELGE
Sbjct:  312 VKAALMADAS-EVPVATDPYFFGKQIAKLGRLVLIADELGE 351
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A3D6DEQ1_9FLAO (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A3D6DEQ1_9FLAO)

HSP 1 Score: 47.8 bits (112), Expect = 4.680e-5
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            VR ALAQD+   + TAPD Y  GKQ + +ARL LIADELGE
Sbjct:  334 VRNALAQDIGFAV-TAPDPYFGGKQFSALARLALIADELGE 373
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BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: H3H0L4_PHYRM (Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0L4_PHYRM)

HSP 1 Score: 47.8 bits (112), Expect = 4.680e-5
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            ++ ALA D N   P A D Y FGK+IAR ARLVLIAD+LGE
Sbjct:  251 IKVALANDSNYT-PEADDPYYFGKEIARQARLVLIADKLGE 290
[Close]
BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A8J6CFR8_DIALT (Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFR8_DIALT)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VRKALAQDLNTEL---PTAPDVYGFGKQIARMARLVLIADELGE 123
            ++ +L  DL   L   P A D+YGFGKQ +R+ARL LIADELG+
Sbjct:  540 IKSSLQLDLAQPLVLRPDAKDLYGFGKQASRLARLALIADELGD 583
[Close]
BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Match: A0A2P4YQ63_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQ63_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE 123
            +R ALA D N   P A D Y FGK+I R ARLVLIAD+LGE
Sbjct:  471 IRVALANDSNYT-PEADDPYYFGKEIGRQARLVLIADKLGE 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167718.4227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JC22_9PHAE9.120e-1170.73Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
D8LU99_ECTSI9.130e-1170.73Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A836CER9_9STRA5.310e-965.85Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus... [more]
A0A850BQD1_9DELT1.340e-563.41Endo-1,3(4)-beta-glucanase n=1 Tax=Polyangiaceae b... [more]
A0A3D6DEQ1_9FLAO4.680e-563.41Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Flav... [more]
H3H0L4_PHYRM4.680e-563.41Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora ra... [more]
A0A8J6CFR8_DIALT6.410e-554.55Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema luth... [more]
A0A2P4YQ63_9STRA6.410e-563.41Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora pa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167718contigH-elongata_contig167718:1042..1167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D8LU99
KEGG koko:K01180
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.5241427-CDS-H-elongata_contig167718:1041..11671622929979.5241427-CDS-H-elongata_contig167718:1041..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167718 1042..1167 +
1691679232.8819501-CDS-H-elongata_contig167718:1041..11671691679232.8819501-CDS-H-elongata_contig167718:1041..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167718 1042..1167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167718.4227.1prot_H-elongata_contig167718.4227.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167718 1042..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167718.4227.1

>prot_H-elongata_contig167718.4227.1 ID=prot_H-elongata_contig167718.4227.1|Name=mRNA_H-elongata_contig167718.4227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
VRKALAQDLNTELPTAPDVYGFGKQIARMARLVLIADELGE*
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mRNA from alignment at H-elongata_contig167718:1042..1167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167718.4227.1 ID=mRNA_H-elongata_contig167718.4227.1|Name=mRNA_H-elongata_contig167718.4227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig167718:1042..1167+ (Himanthalia elongata Himel1 dioecious)
GTACGAAAGGCGTTGGCGCAAGATCTGAACACGGAGCTCCCCACAGCCCC
GGACGTGTATGGCTTCGGAAAGCAAATCGCACGAATGGCCCGACTCGTGC
TCATCGCTGACGAATTGGGTGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig167718:1042..1167+

>mRNA_H-elongata_contig167718.4227.1 ID=mRNA_H-elongata_contig167718.4227.1|Name=mRNA_H-elongata_contig167718.4227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig167718:1042..1167+ (Himanthalia elongata Himel1 dioecious)
GTACGAAAGGCGTTGGCGCAAGATCTGAACACGGAGCTCCCCACAGCCCC
GGACGTGTATGGCTTCGGAAAGCAAATCGCACGAATGGCCCGACTCGTGC
TCATCGCTGACGAATTGGGTGAGTAGGTACGAAAGGCGTTGGCGCAAGAT
CTGAACACGGAGCTCCCCACAGCCCCGGACGTGTATGGCTTCGGAAAGCA
AATCGCACGAATGGCCCGACTCGTGCTCATCGCTGACGAATTGGGTGAGT
AG
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