mRNA_H-elongata_contig167651.4224.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167651.4224.1
Unique NamemRNA_H-elongata_contig167651.4224.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167651.4224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167651contigH-elongata_contig167651:317..1127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size813
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.173074-CDS-H-elongata_contig167651:316..11261622929979.173074-CDS-H-elongata_contig167651:316..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167651 317..1126 +
1691679232.6747375-CDS-H-elongata_contig167651:316..11261691679232.6747375-CDS-H-elongata_contig167651:316..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167651 317..1126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167651.4224.1prot_H-elongata_contig167651.4224.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167651 317..1126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167651.4224.1

>prot_H-elongata_contig167651.4224.1 ID=prot_H-elongata_contig167651.4224.1|Name=mRNA_H-elongata_contig167651.4224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
AVKAAVAVIPGVAPPEPSASRIESAKSLAATTGCVEVASIGASTSSLCFG
SGSGTASVFISVLQEASSSGAESAVFLTAVSGCVGAVSMVSLGSSCCSIS
NSITFTSADAIVAVIPGFASPEASSSGIESATSLTASGGCVGVASIGAST
SSSCSGSGPGTVFAFTSASAKAVDSVVIDITSTGPSIIGAGSTASSSVDI
GRAGVISDTSTFGSSSFASLSTFGTNEKKAFAAAAVHVVVAVSSDVDVFP
AEAFPKYIFGATCPAVSSAA
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mRNA from alignment at H-elongata_contig167651:317..1127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167651.4224.1 ID=mRNA_H-elongata_contig167651.4224.1|Name=mRNA_H-elongata_contig167651.4224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=811bp|location=Sequence derived from alignment at H-elongata_contig167651:317..1127+ (Himanthalia elongata Himel1 dioecious)
GCGGTCAAAGCAGCAGTTGCCGTCATCCCCGGTGTAGCTCCGCCAGAGCC
CTCTGCAAGTCGTATCGAATCTGCGAAATCATTGGCCGCCACCACCGGCT
GTGTGGAAGTAGCATCCATAGGTGCCTCGACCTCCAGCTTATGCTTTGGC
TCTGGATCCGGCACCGCCTCTGTCTTTATCTCCGTCTTGCAAGAGGCCTC
TTCAAGTGGTGCTGAATCGGCGGTCTTCTTAACCGCCGTTTCTGGCTGCG
TCGGAGCAGTATCCATGGTTTCCTTGGGCTCCAGCTGCTGCTCAATCTCT
AACTCTATCACTTTCACCTCGGCTGACGCAATCGTTGCCGTCATCCCCGG
CTTTGCTTCGCCAGAAGCCTCTTCAAGCGGCATCGAATCGGCGACCTCCT
TGACCGCCTCGGGGGGCTGTGTGGGGGTAGCATCTATAGGCGCCTCGACC
TCCAGCTCCTGCTCCGGCTCTGGACCCGGCACCGTCTTTGCTTTCACCTC
CGCCTCGGCTAAGGCAGTCGATAGCGTCGTTATCGACATAACTTCGACAG
GGCCTTCTATAATCGGCGCAGGTTCAACGGCCTCATCATCCGTCGATATA
GGGCGCGCGGGAGTCATTTCCGATACTTCAACCTTTGGATCCTCCTCGTT
TGCCTCTCTCTCCACGTTCGGCACCAACGAAAAGAAAGCCTTCGCTGCCG
CCGCGGTCCATGTCGTCGTTGCCGTTTCCTCTGACGTCGACGTTTTCCCC
GCCGAGGCCTTCCCTAAGTATATTTTCGGTGCCACTTGTCCGGCAGTCTC
TTCGGCTGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig167651:317..1127+

>mRNA_H-elongata_contig167651.4224.1 ID=mRNA_H-elongata_contig167651.4224.1|Name=mRNA_H-elongata_contig167651.4224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig167651:317..1127+ (Himanthalia elongata Himel1 dioecious)
GCGGTCAAAGCAGCAGTTGCCGTCATCCCCGGTGTAGCTCCGCCAGAGCC
CTCTGCAAGTCGTATCGAATCTGCGAAATCATTGGCCGCCACCACCGGCT
GTGTGGAAGTAGCATCCATAGGTGCCTCGACCTCCAGCTTATGCTTTGGC
TCTGGATCCGGCACCGCCTCTGTCTTTATCTCCGTCTTGCAAGAGGCCTC
TTCAAGTGGTGCTGAATCGGCGGTCTTCTTAACCGCCGTTTCTGGCTGCG
TCGGAGCAGTATCCATGGTTTCCTTGGGCTCCAGCTGCTGCTCAATCTCT
AACTCTATCACTTTCACCTCGGCTGACGCAATCGTTGCCGTCATCCCCGG
CTTTGCTTCGCCAGAAGCCTCTTCAAGCGGCATCGAATCGGCGACCTCCT
TGACCGCCTCGGGGGGCTGTGTGGGGGTAGCATCTATAGGCGCCTCGACC
TCCAGCTCCTGCTCCGGCTCTGGACCCGGCACCGTCTTTGCTTTCACCTC
CGCCTCGGCTAAGGCAGTCGATAGCGTCGTTATCGACATAACTTCGACAG
GGCCTTCTATAATCGGCGCAGGTTCAACGGCCTCATCATCCGTCGATATA
GGGCGCGCGGGAGTCATTTCCGATACTTCAACCTTTGGATCCTCCTCGTT
TGCCTCTCTCTCCACGTTCGGCACCAACGAAAAGAAAGCCTTCGCTGCCG
CCGCGGTCCATGTCGTCGTTGCCGTTTCCTCTGACGTCGACGTTTTCCCC
GCCGAGGCCTTCCCTAAGTATATTTTCGGTGCCACTTGTCCGGCAGTCTC
TTCGGCTGCCGCGGTCAAAGCAGCAGTTGCCGTCATCCCCGGTGTAGCTC
CGCCAGAGCCCTCTGCAAGTCGTATCGAATCTGCGAAATCATTGGCCGCC
ACCACCGGCTGTGTGGAAGTAGCATCCATAGGTGCCTCGACCTCCAGCTT
ATGCTTTGGCTCTGGATCCGGCACCGCCTCTGTCTTTATCTCCGTCTTGC
AAGAGGCCTCTTCAAGTGGTGCTGAATCGGCGGTCTTCTTAACCGCCGTT
TCTGGCTGCGTCGGAGCAGTATCCATGGTTTCCTTGGGCTCCAGCTGCTG
CTCAATCTCTAACTCTATCACTTTCACCTCGGCTGACGCAATCGTTGCCG
TCATCCCCGGCTTTGCTTCGCCAGAAGCCTCTTCAAGCGGCATCGAATCG
GCGACCTCCTTGACCGCCTCGGGGGGCTGTGTGGGGGTAGCATCTATAGG
CGCCTCGACCTCCAGCTCCTGCTCCGGCTCTGGACCCGGCACCGTCTTTG
CTTTCACCTCCGCCTCGGCTAAGGCAGTCGATAGCGTCGTTATCGACATA
ACTTCGACAGGGCCTTCTATAATCGGCGCAGGTTCAACGGCCTCATCATC
CGTCGATATAGGGCGCGCGGGAGTCATTTCCGATACTTCAACCTTTGGAT
CCTCCTCGTTTGCCTCTCTCTCCACGTTCGGCACCAACGAAAAGAAAGCC
TTCGCTGCCGCCGCGGTCCATGTCGTCGTTGCCGTTTCCTCTGACGTCGA
CGTTTTCCCCGCCGAGGCCTTCCCTAAGTATATTTTCGGTGCCACTTGTC
CGGCAGTCTCTTCGGCTGCC
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