mRNA_H-elongata_contig16756.4214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16756.4214.1
Unique NamemRNA_H-elongata_contig16756.4214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A6H5K420_9PHAE (DUF1681 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K420_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 2.490e-80
Identity = 164/206 (79.61%), Postives = 174/206 (84.47%), Query Frame = 1 
Query:    4 DEIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAA----DLSLKQGQTIKISIGG-SKTSSRAKKVAGXXXXXXXXXX-TLAPPPGDTARK 603
            DEIVEHTL QIQECYLFELPPRVRA+GWLA+DMTKQ+WTGR+RVVQRG+EAAIMLVDRRDGKLFA+CKV DGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIER+A L +G   Q G           AA    DLSLKQG+ IKISIGG SK SSR +    XXXXXXXXXX TLAPPPGDTARK
Sbjct:    7 DEIVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSAKLKEG--GQGGXXXXXXXGKAAAATPKVDLSLKQGEKIKISIGGGSKASSRPRXXXXXXXXXXXXXXLTLAPPPGDTARK 210
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: D8LLJ9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ9_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 2.820e-78
Identity = 139/170 (81.76%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    4 DEIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAA----DLSLKQGQTIKISIGG 501
            DEIVEHTL QIQECYLFELPPRVRA+GWLA+DMTKQ+WTGR+RVVQRG+EAAIMLVDRRDGKLFA+CKV DGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIER+  L   E  Q G + GGD     AA    DLSLKQG+ IKISIGG
Sbjct:    7 DEIVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSTKLK--EDGQGGGDSGGDGGKAAAATPKVDLSLKQGEKIKISIGG 174
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A4D9CRU7_9STRA (DUF1681 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRU7_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.490e-39
Identity = 81/167 (48.50%), Postives = 116/167 (69.46%), Query Frame = 1 
Query:    4 DEIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGD---EPPFKAADLSLKQGQTIKISI 495
            ++ VE TL QI+  ++F++PPR  A G+ ASD   ++W G +++VQ+G +AAI+L D + G LFA+  +++G+VER  DSSRYFV+K+QNA G+HAF+G+AFD+R QAFDFNVA+QE++KD ER       ER + G   GG    E      DLSLK+G+ I I +
Sbjct:    7 EDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKERE------ERLRTGVGAGGVDSMEAGIPKRDLSLKEGEKISIKL 167
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A1Z5JP51_FISSO (DUF1681 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP51_FISSO)

HSP 1 Score: 148 bits (374), Expect = 5.730e-37
Identity = 74/176 (42.05%), Postives = 112/176 (63.64%), Query Frame = 1 
Query:    7 EIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISIGGSKTSSRAKKVA 534
            E++E     I + ++F+LPPR  A GW  +D  K++W G L+VV+RG+   I+LVD +   +FA+C V DGAV+R  DSSRYFV+K++NA G+H FVG+AF++RN AFDFN AL++ +++ E    ++K +           EP     D S+K+G+ I IS+G +  +   KK A
Sbjct:   25 EVIERVRCTIPDAHIFKLPPRPTAGGWRGADWDKEVWQGTLKVVERGDLTVILLVDPKKNSIFAVCPVSDGAVDRCVDSSRYFVLKVENADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQNMAKLDIG---------EPK----DYSIKEGEKIHISVGKTSVTRLTKKKA 187
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A7S2YCS3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.090e-36
Identity = 73/175 (41.71%), Postives = 115/175 (65.71%), Query Frame = 1 
Query:    7 EIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISI--GGSKTSSRAK 525
            E+VE     I + ++F+LPPR  A GW  +D  +++W G L+VV+RG+   ++LVDR  G +FA+C V+DGAV+R  DSSRYFV++++NA GRH ++G+AF++RN AFDFN +L++ +++ E  A   +            D  P K  D S+K+GQ I I++  GG++  S++K
Sbjct:   25 EVVERVRCSIPDAHVFKLPPRQTAGGWRGADWDQEVWQGTLKVVERGDLTVVLLVDRTSGAIFAVCPVKDGAVDRCVDSSRYFVLRVENANGRHIYIGMAFNERNDAFDFNTSLEDSRREREAAANPVQV-----------DVGPSK--DYSIKEGQKIHINVKVGGTEKKSKSK 186
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A835YRJ0_9STRA (NECAP endocytosis associated 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.710e-35
Identity = 71/137 (51.82%), Postives = 101/137 (73.72%), Query Frame = 1 
Query:  115 WTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVER------VPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGD-EPPFKAADLSLKQGQTIKISIGGS 504
            W+GRLR+VQRG++A I L ++ DGK+FA+ +V++G+V++      V DSSRYFV+K+++  GRHAF+GLAF+DRN +FDFNVALQEF+KD+ R A + KG         GGD  P   A D +LK+G+ IK++IGG+
Sbjct:    1 WSGRLRIVQRGKDATIQLTNKTDGKIFAMSRVKEGSVDKASARALVKDSSRYFVLKVESPDGRHAFIGLAFNDRNASFDFNVALQEFQKDVAREAAMEKG---------GGDLTPKGPAMDFTLKEGEKIKMNIGGA 128
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A8J9SYL8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SYL8_PHATR)

HSP 1 Score: 140 bits (353), Expect = 7.750e-35
Identity = 69/163 (42.33%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:    7 EIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISI 495
            E++E     I + ++F+LPPR  A GW  +D  +++W G L+VV+RG    I+L D+    +FA+C V++GAV+R  DSSRYFV++++NA GRH F+GLAF++RN AFDFN +L++ +++ E  A        ++GT+ G   PP    D S+K G+ I IS+
Sbjct:    4 EVIERVRCVIPDAHVFKLPPRQTAGGWRGADWDQEVWQGTLKVVERGALTVILLTDKTTHAIFAVCPVKEGAVDRCVDSSRYFVLRVENAAGRHMFIGLAFNERNDAFDFNTSLEDSRREKEAEA------NPEEGTDSG---PP---KDYSMKDGEKIHISV 154
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A7S3LCD2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCD2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.770e-34
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 1 
Query:    7 EIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQ-GRHAFVGLAFDDRNQAFDFNVALQEFK--KDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISIG---GSKTSSRAKKVA 534
            E++E     I + ++F+LP R  A GW  +D  +++W G L+VV+RG+   I+LVDR +G +FA+C V+DGAV+R  DSSRYFV++++NAQ GRH ++G+AF++RN AFDFN +L++ +  K+IE   ++          E+G       A D S+K G  I I++    G +TSSR  K A
Sbjct:   25 EVIERVRCSIPDAHVFKLPHRPTAGGWRGADWDQEVWQGTLKVVERGDLTVILLVDRANGGIFAVCPVQDGAVDRCVDSSRYFVLRVENAQNGRHMYIGMAFNERNDAFDFNTSLEDSRREKEIEAAPVV---------VEQGP------AKDYSMKDGDKIHINVNKVAGKRTSSRRTKSA 191
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A9NWQ6_PICSI (DUF1681 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NWQ6_PICSI)

HSP 1 Score: 139 bits (351), Expect = 5.000e-33
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 1 
Query:    4 DEIVEHTLAQIQECYLFELPPR-----VRAKGWLASDMTKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAICKVEDG----AVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISIGGSKTSSR----AKKVAGXXXXXXXXXXTLAPPPG 588
            +E  EHTL  ++E  ++++PPR      +   WL SD   ++WTGRLRVV   E   I L D   G+LFA C V  G    +VE V DSSRYFV+KI++ +G+HAF+GL F +RN+AFDFNVAL + +K I R     KGE N+DG           A +  LK+G+TI+I++    ++      A  +AG          +LAPPPG
Sbjct:    6 EEAFEHTLLVVREVSVYKIPPRSTSGSYKCGEWLQSD---KIWTGRLRVVSCKERCEIRLEDSNTGELFAACYVYPGHRETSVETVADSSRYFVLKIEDGRGKHAFIGLGFAERNEAFDFNVALSDHEKYIRREQEKEKGEENEDGKIE-----IHPAVNQRLKEGETIRINVKNKASAGTGMLSAAGLAGSVSSTGRQKASLAPPPG 205
[Close]
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Match: A0A077WRH6_9FUNG (DUF1681 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WRH6_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 5.250e-33
Identity = 79/181 (43.65%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:    7 EIVEHTLAQIQECYLFELPPRVRAKGWLASDM----TKQLWTGRLRVVQRGEEAAIMLVDRRDGKLFAIC--KVEDGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKAADLSLKQGQTIKISIG--GSKTSSRAK 525
            E  E  L  I+EC+++ +PPR  A+G+ A++     +  LW GRLR++ +GE  +I L D   G+LFA+C       AVE V DSSRYFV+KI++ +GRHAF+G+ F +R+ AFDFNVALQ+F K I      +         ER          D SLK+GQTI ISIG  G+K ++R K
Sbjct:    2 EDYESVLLVIRECFVYRIPPRTAARGYRAAEWGDLGSSYLWKGRLRIITKGESCSIRLEDANTGELFALCPYSTTGNAVEAVLDSSRYFVLKIEH-EGRHAFIGMGFQERSDAFDFNVALQDFAKQIRAEKQAA---------ERAKQAEQLPKKDYSLKEGQTISISIGNVGAKRTNRPK 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16756.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K420_9PHAE2.490e-8079.61DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLJ9_ECTSI2.820e-7881.76DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4D9CRU7_9STRA8.490e-3948.50DUF1681 domain-containing protein n=2 Tax=Monodops... [more]
A0A1Z5JP51_FISSO5.730e-3742.05DUF1681 domain-containing protein n=2 Tax=Fistulif... [more]
A0A7S2YCS3_9STRA2.090e-3641.71Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835YRJ0_9STRA4.710e-3551.82NECAP endocytosis associated 2 (Fragment) n=1 Tax=... [more]
A0A8J9SYL8_PHATR7.750e-3542.33Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S3LCD2_9STRA2.770e-3441.76Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A9NWQ6_PICSI5.000e-3341.35DUF1681 domain-containing protein n=1 Tax=Picea si... [more]
A0A077WRH6_9FUNG5.250e-3343.65DUF1681 domain-containing protein n=2 Tax=Lichthei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16756contigH-elongata_contig16756:319..7122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue1.6e-69
Seed eggNOG ortholog2880.D8LLJ9
Preferred nameNECAP1
KEGG koko:K04554,ko:K11673,ko:K12608,ko:K20069
KEGG Pathwayko03018,ko04120,ko04141,ko05012,map03018,map04120,map04141,map05012
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdaptin ear-binding coat-associated protein 1 NECAP-1
Ec32 orthologEc-04_005560.1
Exons7
Model size2983
Cds size1395
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16756.4214.1prot_H-elongata_contig16756.4214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16756 1907..7122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.7652836-UTR-H-elongata_contig16756:318..19061622929977.7652836-UTR-H-elongata_contig16756:318..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16756 319..1906 -
1691679232.0780144-UTR-H-elongata_contig16756:318..19061691679232.0780144-UTR-H-elongata_contig16756:318..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16756 319..1906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.7814264-CDS-H-elongata_contig16756:1906..20741622929977.7814264-CDS-H-elongata_contig16756:1906..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 1907..2074 -
1691679232.0894775-CDS-H-elongata_contig16756:1906..20741691679232.0894775-CDS-H-elongata_contig16756:1906..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 1907..2074 -
1622929977.8002658-CDS-H-elongata_contig16756:3310..35741622929977.8002658-CDS-H-elongata_contig16756:3310..3574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 3311..3574 -
1691679232.0975082-CDS-H-elongata_contig16756:3310..35741691679232.0975082-CDS-H-elongata_contig16756:3310..3574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 3311..3574 -
1622929977.8157563-CDS-H-elongata_contig16756:4127..45831622929977.8157563-CDS-H-elongata_contig16756:4127..4583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 4128..4583 -
1691679232.1052217-CDS-H-elongata_contig16756:4127..45831691679232.1052217-CDS-H-elongata_contig16756:4127..4583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 4128..4583 -
1622929977.832559-CDS-H-elongata_contig16756:5264..54091622929977.832559-CDS-H-elongata_contig16756:5264..5409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 5265..5409 -
1691679232.1127844-CDS-H-elongata_contig16756:5264..54091691679232.1127844-CDS-H-elongata_contig16756:5264..5409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 5265..5409 -
1622929977.8537455-CDS-H-elongata_contig16756:5931..61171622929977.8537455-CDS-H-elongata_contig16756:5931..6117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 5932..6117 -
1691679232.1233337-CDS-H-elongata_contig16756:5931..61171691679232.1233337-CDS-H-elongata_contig16756:5931..6117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 5932..6117 -
1622929977.883838-CDS-H-elongata_contig16756:6616..67031622929977.883838-CDS-H-elongata_contig16756:6616..6703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 6617..6703 -
1691679232.13554-CDS-H-elongata_contig16756:6616..67031691679232.13554-CDS-H-elongata_contig16756:6616..6703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 6617..6703 -
1622929977.9031541-CDS-H-elongata_contig16756:7033..71221622929977.9031541-CDS-H-elongata_contig16756:7033..7122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 7034..7122 -
1691679232.1450503-CDS-H-elongata_contig16756:7033..71221691679232.1450503-CDS-H-elongata_contig16756:7033..7122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16756 7034..7122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16756.4214.1

>prot_H-elongata_contig16756.4214.1 ID=prot_H-elongata_contig16756.4214.1|Name=mRNA_H-elongata_contig16756.4214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=465bp
ADEIVEHTLAQIQECYLFELPPRVRAKGWLASDMTKQLWTGRLRVVQRGE
EAAIMLVDRRDGKLFAICKVEDGAVERVPDSSRYFVIKIQNAQGRHAFVG
LAFDDRNQAFDFNVALQEFKKDIERTAMLSKGERNQDGTERGGDEPPFKA
ADLSLKQGQTIKISIGGSKTSSRAKKVAGGGSGIGGGALTLAPPPGDTAR
KKGRGGGGLLAPPPGDTRRARGIGLARTSPASTLTTGGPPSLSSQGSSFV
FPASTTATPSAAAPALSSSLPGARSFSPVGGDGVRGKGTGEAWMHHAGGG
GGGLLGMLSGGDPAGDAGVPVAYRVPATTKGEDDDDPFGLGLGSTATPAG
ASPPLPLPQQQQQQFSEFSAPPQQQGGLSNMSGLGAGLPSVGGVGSAPLL
QTPGLASQQQTLAYSQDLHSQPQVLPPGGGGGGQTGFTSGVIPSGTSVVP
KKTVAADDPFHGLF*
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mRNA from alignment at H-elongata_contig16756:319..7122-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16756.4214.1 ID=mRNA_H-elongata_contig16756.4214.1|Name=mRNA_H-elongata_contig16756.4214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6804bp|location=Sequence derived from alignment at H-elongata_contig16756:319..7122- (Himanthalia elongata Himel1 dioecious)
GCGGACGAGATCGTGGAGCACACGCTCGCACAGATCCAGGAATGCTATCT
CTTCGAGCTCCCGCCAAGGGTCAGGGCGAAAGGATGGCTGTGAGGATGCA
CGCACGTGTTTGTCTATTTCTGGTTTTCCGTCTTCGGTGTTAGTTCACGA
CTGCTAGCTAGCGTAGGTTTTAGAAGAAAAGCCAACCGCGGGGTTTTACA
ACCGGGGATGGCTTTTGGGGTTAGCATCTATTAATAAACGGTTTTGCTCA
GCTCTTGACCTTCCAGTCGACGAGACACAGCATCACGCGCGCGGTACACT
TTTCTGTTTTGAATATACAAAGCATTTTCATGTCTCTTTATTTTTCTTTC
ATTTCTTCTAGTCTTTTATCTTTCCTTTTTTTATATTTCCTTTTATCTTT
GTTTTTTCGTTTTGGGCAGGGCTTCCGACATGACGAAGCAATTGTGGACA
GGAAGATTGAGAGTGGTCCAAAGGGGCGAAGAAGCGGCGATCATGCTCGT
AGACAGGTCGGTTCGATTTATCCGTTGAGAGGGGAGGTTGGGGGGTGGGG
GGTACAGCAGTATCACTCAGGCCTTTCGATCATCGCATCTACCGGTATGA
TCTTGCCGTGATCTTTACCCGGTATCTCGCTGCTTTTACCAAAAGAAACG
TGTCCATCCACTGATCGACGTCGCTCGAGGAAAAGAGGCTTTTTTTAGTA
GGGCAAGATAGGGTCACGGAGAGGTTGAAGGGAAGGTGATATTTTATGTT
GACTTCGACAGCCCCCGACTGTAATATGTGTAACGATTAGCGCATTGACA
CAAAGGCACGATCCCTCACGGCGACAACCCCTCGAAGTGACCCTGGCACG
GCGAAGCCACATCCTCTGCCAGAAAAACGTACACTATTATTGTATTTTGT
AGCGCCCGCTATGTCGCGGGGGGATTCCGAAAGTCCCCGATCAGCAAGCA
TGCCGCCTGAGGAAACCCCCTCCCGTTCTCCTCCACGTGACGCCAACGTG
CGCAGGCGTGACGGAAAGCTGTTCGCGATCTGCAAGGTGGAAGACGGGGC
GGTGGAACGCGTCCCGGACAGCAGCCGCTACTTCGTCATCAAGATCCAGA
ACGCGCAGGGGCGTCATGCCTTCGTCGGGCTGGCGTTCGACGACCGCAAC
CAGGCGTTCGACTTCAACGTGGCCCTCCAAGAATTCAAGAAGTCAGTTTC
TAGTTGTCGGTTGACAGGTTCTTGACAGTATGTCAAGGCGTATTTTTGGA
AAATATACTAGTTATAGTTAGAGAATGTGTCCTTGACACGTCTGTCAAGG
GGTTCAACTCTTGTCAACCGACAACTTTAGCTTTGGATTGCGAGTCGGTT
GTCAGGGGAAAAAGAAGGGGGGGGCTGGAGGTAGGGTGTCGATTGAGGCG
ATATCAATTTATATATATTATATTATGTACATCTGCAGCGCCAGAGAGCA
ACATTCGTGAATATTTCCCCCTTGCATATATGGGAGGGTAGAGCTGGAGG
TGGAGGTGGATGCTCTCGTTTCCCGGGTCGTCTTTTTAGCGATCTCGACC
GTCGTGTTAAAGATGAGTGGTGAAAACGAGGGGGGGGTGGTTCGAAGATG
GGAGATGTGCGATTTGCTCATAGTTTCTATAATTTGATCATCCGGACTCG
TGCGCGCACACACACACATACACACTCAAACGGCGTTCACACCCATTGCG
TGCGCGTGAGCAGAGATATAGAGCGCACCGCGATGCTGAGCAAGGGTGAG
CGCAATCAGGACGGGACGGAACGGGGTGGGGATGAGCCACCCTTCAAGGC
GGCCGACCTCAGCCTCAAGCAAGGCCAAACGATCAAGATCAGCATCGGTG
GCAGCAAGGTTATGTGTTTGTTGTAAAAAAATATCGACGACCCCAAAAGG
GCTCACAGATGGATGCAAAAACTCTGTCCGTGATGCCTGGAGCGCGGAAT
AAATGTTGGTGAAATTGGCGATAGTTGGTCCACTGTACTGCACCTCTCAT
GGTGCTATAAAGGCGTGGGTGTTGGAAGGGTCTTAATGAGTTCATATATT
CTTTAATTAAAACCCTTGTTCCCCCCCCCCCTCAAAAAAGCCTTCAAACC
GTAAAGGAAACGAGAAAAGTGTGAAGCGGGCGCGAGACGAGACTTTATAT
GCGGCTCATATTTTTTCGTTTGAGTTATTCGGCGCGCAACTTGAAAAGAA
TGGAAAGAGGATGGAGATATAATTGGCCTCAAAAACAGCCAAGAACAGGT
GATACTTCCTGCCTTGAACTTTCCGTTATATTTGTAATAGTAATAGCTCT
ATCTTGCCTCTGCAGAAGCTGTACGACCTGCAACGGGCATCTGCTGCTTT
TTTGCAAGCCTGCTATGCTCGAGATCTCAAGACACACGCGAGACACGCCG
CCGTAGCAGCCATAACAACAAAAATTGCAGACCCCCTTCCCCACGCAACT
CACACTCACCCCTCCCCTCTTCCGACCGTTGTGTTATCTGCATCATGCGC
CGACGACCCTTCCATTTCACTTATCCACCCGGACGTCAGACATCGTCCCG
GGCGAAAAAAGTAGCCGGAGGTGGGAGCGGGATAGGAGGGGGGGCGCTTA
CCCTTGCGCCCCCCCCCGGGGACACGGCGCGAAAGAAGGGTCGTGGGGGA
GGGGGGCTGCTTGCGCCCCCCCCGGGGGACACAAGACGGGCCCGGGGGAT
TGGCCTCGCCAGAACGTCGCCGGCGAGTACCTTGACGACGGGAGGCCCTC
CTTCCTTGTCCTCCCAGGGTAGTTCTTTCGTATTCCCCGCCTCCACCACC
GCAACCCCGTCAGCAGCAGCACCCGCACTTTCTTCTAGCCTTCCCGGGGC
CCGGAGTTTTTCTCCTGTAGGGGGCGATGGGGTCCGGGGGAAGGGCACGG
GAGAAGCTTGGATGCATCACGCCGGCGGCGGCGGCGGCGGGCTGCTCGGG
ATGCTGTCCGGCGGCGACCCTGCCGGTGATGCTGGTGTTCCGGTGGTAAG
TGGTTCCTGACGGTCGTGGTTTTCCGCTAACAGGCCCTGCCAGAACGTCT
TCTCAGACCCTTGGGTTGTGTTTTTGTTTTTGTGGGTAGTGGAGCTCTCT
CGTATTCTGCGGATAGGGCCTCAAGTGTCGGGGTATCTCAATGTGAGCGG
TGTCATCCCTCATACATATGCCGTCGGCGTCGCGTGGCGGCTTAGCAAGG
TTTTGGTTGCCGATTTTTAAATTTGAGAGTGTTTAAAGAGGCGTTTTAAA
AAGAGCTCTACGCTGTATATGACCCATCGTCGCTGACCCTTAAACTCCGA
GATCTCCCCTCCCAACCCTTCCCTCTCCCCCAAGCAACGCTACGGCCTAT
TCTCCGCCCCCCCCACACACTCAAATAAAACAAAAAAAAACTCACGCTTG
CTCTCACTTGCCCATACCATGCCGATGTATACTTTTTTTCCCCTCCGCCC
GCCCAACCGGAACACGCCTCTGCATCCCCACCGCATCTCTAATGAATGTC
TTGTCAACGGCTGTGCGGCATCTTCGCATTATGGTCCTTCCCTCCAAGGC
TTACCGTGTTCCCGCCACGACAAAAGGCGAAGACGACGACGACCCGTTCG
GCCTTGGGCTCGGATCCACCGCGACGCCCGCCGGGGCCTCGCCGCCACTA
CCGCTACCACAGCAGCAGCAGCAGCAGTTCTCCGAATTCTCGGCCCCTCC
CCAACAGCAGGGAGGTCTCTCCAATATGAGCGGACTCGGCGCGGGCTTAC
CCTCTGTCGGGGGAGTGGGATCTGCGCCGCTTCTGCAAACGCCGGGGCTT
GCAAGCCAGCAGGTGACGGATGATTTGCTGATATAGATCAACAGCACTAG
CGGGAAGAGGTGGGGTTGGGGGGGGGGGGGGGGGGGGTATATTCAAGTTT
TGCATGATTTAGAGGCTTTATGTTAAAACGCGTACCTCATATTAACCGAA
CGGACATAACATGCCACACACACCCCAACAATGCCGCGACGGAGCGAAAT
TCCGGGTTTTCACCGTCCAGACTGCGCTTGCTTCGCCCAAAAGGGACATG
TCATGGGTTGTTTGGACTCATCGGATAACCAAATGTTACACTTTGAGTAG
GCGTTATCGTTATATCGTTATCGACGACTACACTCCAAGCACCGCAAAGG
GGATTTGGTTTCCGTCCGAACGCGTAACCCCCGCACGCACACAACATCCA
CAACGGTATGTGTGTGGTACACTCGGGTTATAATATGCTCGTAGACACTC
CTCGCGGGGGAGTTCTACTGTAATGATTGCTCCGGGGGCTTTCCAGCAAT
CCATTGTTCAGCTGACATTATAGAAAATGAGGCGTTTCACCACTATGGAG
CACTTCGACCCAGGTCTCTAGGCTCACAGGACACTGCATAAACTACCCCA
TGCCCGATAAATAGCACTGTTACAGGTCCATGCCACGAGAGCCAACCCTT
TCCTCGTTTTTTGGGGGGGAGGCGTTATCGAGGGGTGGGGACGTGCTCAA
GTTTTCAATGCCTTCGCTGTTAGACCACGGCGGGGGGTGGCTTATACCCA
GTGTGCGTGGGCTCGTTCGTCCGCATGGCGAAGTCCTTCGATCGAGAGCC
ATGTTGCGAGAGACGGGTTTTGACAAACTAGGCTGGTTAGTTTGTTATTT
CCCTTGTTGTCTCGGCTACCTTCGAAGGAAGAGGTGCATCGAAACAACAG
CGCGTAGCCCGTGTCGTTGTGCTCGATTTCCACGCTAAGAGGAGGGGCGG
TTCTCCTCCGTTCCCCCGACGCGGGCGGAAGAAGTCGTCTTTGTCAAGTG
TATGTATGTAGAAGTGAAGCTGTATGTTAAGTGTGGGTGGGCAAGATGAC
CGAGAACATTCCCCAAAGCAGCGTTGCGAAATTTTCCCCATCATGTGTGC
GTCTCGTTCCTCCACCGGTCCGTCCTTTTTTCTCAACGCGTAGGTTTGCG
CTCCACACGTGATCCGCAGGCCACCCCATACGAACTCCCCCCCCCCTCCG
ATTTCCCCTCCCCTCCCCCCTCTCTTGCGTGGTGTCTCGGCAACACAGCA
AACCCTGGCATACTCCCAAGACTTACACTCTCAACCGCAGGTATTGCCCC
CGGGGGGAGGCGGGGGTGGGCAGACTGGGTTTACCAGCGGCGTTATACCC
TCGGGGACAAGCGTCGTGCCCAAGAAGACCGTGGCGGCGGACGACCCGTT
CCACGGGTTGTTCTAGGACTGCCGTGCTGGTACTAGCTTTGACACTTGCA
CCCCTTTTTTATTTCGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGAT
TGCTTATCACCGTCTGCTTGGTACTCCTACTGAATCGCTACTGTATTATC
GTCCTGTGGGAAATGTAATGTTTTGGTGTGTGATTTAAACAAAAGAGGAC
ACGGGCGCGTTTTAGCTACCATATCCATTCCCAAGAAAAAGAGAGAAACG
CCTCCTCCCGATTTCTCAACAACTACAAAAGTCAATCGTGGGCTGTGTTA
GCCGCTGGCCGTCTCACATTTCTACCGTACTTTGCCGAATGCCTTCCGAC
CTTCCGAATCGAATCGATTTTTACCCGGAGGTCCTCCTTCGTTTTTGTCT
TTTTCCTTACGACGTATGTTACCTCAGTTGTTGTTACCCTGTTTTGTTCA
GCTTGTTGACAAACGACTATAAGCTACAATAAAAGTAAAAGGTACATCGC
CTTAAGGAGAAAGGTGGAGGGTACATCGCCTTAAGGAGAAAGGTGGAGGG
TACATCGCCTTAAGGAGAAAGGTGGAGGAAGTGTCTCCGCAAGTAAAAAG
GTACATCGCCTTAAGGAGAAAGGTGGAGGAAGTGTCTCCGCAAGACTCGA
GGCATGTTGCCCCGGTTTTCAGTAATGACGTGTGGTCCTTGGCTGATCGA
ACCGAATACGATGTCGTGTTGATTAAGGCCGCCATTTTTGCTTGTCTGGA
ATGAAAAACTGCTGTATTTCGAAGGAAGGCGGGCGGGCGGGCGGCGAAAA
AGTGGAGGCAGCGATTGGTTTGTGCGAAGGGTCAAACGCGCGTCTAACGC
GGCCGCCGTAGCAGAGAAGCCCCGGGATATATCTAATTGCTAAATATTCT
CTCTTCGAGGCAGGGGTAAGGTGTGCAACGTTTTCCGTCAATACGGAGCG
CCACACGTTGGCGTAGATCTAATGTAGCTGAACGCGCACGAGTCTCACAG
AGAAGCATAATATATTGTTCTGTAAGCATAATGAAAATCGTCACATGTCG
CCATGTGGGGACGTAGAGAGGAGGCGTTATTATTGCAACCAGAAGGAAGA
ATGGCGAACAAACCAGCGAAAAGAATATCAAAATAGGGAGGCCGTTACAA
CCTACCCAAGGGATCGGATGGTTGTGAGAAAAGGGCAGCAAGCGGGAGAA
GCGGGGGGTGTATGAAGTGGCTGTATAGCTTCTGGTTGCAATATATTTCG
TAATGTAATATCTAGCTAGCAATATCAAGAGGATTTCGAATGTTTCCTGG
TTGTAGTGAGGAGACAAAACACCACGCGTACATCGTAATAACAGCAGCAG
CCACTCGACTTTGCGGACCAACGAGTGCTACGCGGGCCTTCACTTATATT
AGGCAGTATCGTACAAATTCGAAGTTGACTGTAGTTGGTCCCCTGGATGG
TACCTCTCACGGCGCCAAGAAGGTGTGGATGTTCGGAAGGTTGGAATGAG
TTCCAAGGTTTTTTAAAAAATAAAAATATTAACATACAGGCAGGGTCCAA
CGATACGTAAAAACTAACCGCCACTGATGCATTTTTGATTGATTGAATTC
TCAC
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Coding sequence (CDS) from alignment at H-elongata_contig16756:319..7122-

>mRNA_H-elongata_contig16756.4214.1 ID=mRNA_H-elongata_contig16756.4214.1|Name=mRNA_H-elongata_contig16756.4214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2790bp|location=Sequence derived from alignment at H-elongata_contig16756:319..7122- (Himanthalia elongata Himel1 dioecious)
GCGGACGAGATCGTGGAGCACACGCTCGCACAGATCCAGGAATGCTATCT
CTTCGAGCTCCCGCCAAGGGTCAGGGCGAAAGGATGGCTGCGGACGAGAT
CGTGGAGCACACGCTCGCACAGATCCAGGAATGCTATCTCTTCGAGCTCC
CGCCAAGGGTCAGGGCGAAAGGATGGCTGGCTTCCGACATGACGAAGCAA
TTGTGGACAGGAAGATTGAGAGTGGTCCAAAGGGGCGAAGAAGCGGCGAT
CATGCTCGTAGACAGGGCTTCCGACATGACGAAGCAATTGTGGACAGGAA
GATTGAGAGTGGTCCAAAGGGGCGAAGAAGCGGCGATCATGCTCGTAGAC
AGGCGTGACGGAAAGCTGTTCGCGATCTGCAAGGTGGAAGACGGGGCGGT
GGAACGCGTCCCGGACAGCAGCCGCTACTTCGTCATCAAGATCCAGAACG
CGCAGGGGCGTCATGCCTTCGTCGGGCTGGCGTTCGACGACCGCAACCAG
GCGTTCGACTTCAACGTGGCCCTCCAAGAATTCAAGAAGCGTGACGGAAA
GCTGTTCGCGATCTGCAAGGTGGAAGACGGGGCGGTGGAACGCGTCCCGG
ACAGCAGCCGCTACTTCGTCATCAAGATCCAGAACGCGCAGGGGCGTCAT
GCCTTCGTCGGGCTGGCGTTCGACGACCGCAACCAGGCGTTCGACTTCAA
CGTGGCCCTCCAAGAATTCAAGAAAGATATAGAGCGCACCGCGATGCTGA
GCAAGGGTGAGCGCAATCAGGACGGGACGGAACGGGGTGGGGATGAGCCA
CCCTTCAAGGCGGCCGACCTCAGCCTCAAGCAAGGCCAAACGATCAAGAT
CAGCATCGGTGGCAGCAAGAGATATAGAGCGCACCGCGATGCTGAGCAAG
GGTGAGCGCAATCAGGACGGGACGGAACGGGGTGGGGATGAGCCACCCTT
CAAGGCGGCCGACCTCAGCCTCAAGCAAGGCCAAACGATCAAGATCAGCA
TCGGTGGCAGCAAGACATCGTCCCGGGCGAAAAAAGTAGCCGGAGGTGGG
AGCGGGATAGGAGGGGGGGCGCTTACCCTTGCGCCCCCCCCCGGGGACAC
GGCGCGAAAGAAGGGTCGTGGGGGAGGGGGGCTGCTTGCGCCCCCCCCGG
GGGACACAAGACGGGCCCGGGGGATTGGCCTCGCCAGAACGTCGCCGGCG
AGTACCTTGACGACGGGAGGCCCTCCTTCCTTGTCCTCCCAGGGTAGTTC
TTTCGTATTCCCCGCCTCCACCACCGCAACCCCGTCAGCAGCAGCACCCG
CACTTTCTTCTAGCCTTCCCGGGGCCCGGAGTTTTTCTCCTGTAGGGGGC
GATGGGGTCCGGGGGAAGGGCACGGGAGAAGCTTGGATGCATCACGCCGG
CGGCGGCGGCGGCGGGCTGCTCGGGATGCTGTCCGGCGGCGACCCTGCCG
GTGATGCTGGTGTTCCGGTGACATCGTCCCGGGCGAAAAAAGTAGCCGGA
GGTGGGAGCGGGATAGGAGGGGGGGCGCTTACCCTTGCGCCCCCCCCCGG
GGACACGGCGCGAAAGAAGGGTCGTGGGGGAGGGGGGCTGCTTGCGCCCC
CCCCGGGGGACACAAGACGGGCCCGGGGGATTGGCCTCGCCAGAACGTCG
CCGGCGAGTACCTTGACGACGGGAGGCCCTCCTTCCTTGTCCTCCCAGGG
TAGTTCTTTCGTATTCCCCGCCTCCACCACCGCAACCCCGTCAGCAGCAG
CACCCGCACTTTCTTCTAGCCTTCCCGGGGCCCGGAGTTTTTCTCCTGTA
GGGGGCGATGGGGTCCGGGGGAAGGGCACGGGAGAAGCTTGGATGCATCA
CGCCGGCGGCGGCGGCGGCGGGCTGCTCGGGATGCTGTCCGGCGGCGACC
CTGCCGGTGATGCTGGTGTTCCGGTGGCTTACCGTGTTCCCGCCACGACA
AAAGGCGAAGACGACGACGACCCGTTCGGCCTTGGGCTCGGATCCACCGC
GACGCCCGCCGGGGCCTCGCCGCCACTACCGCTACCACAGCAGCAGCAGC
AGCAGTTCTCCGAATTCTCGGCCCCTCCCCAACAGCAGGGAGGTCTCTCC
AATATGAGCGGACTCGGCGCGGGCTTACCCTCTGTCGGGGGAGTGGGATC
TGCGCCGCTTCTGCAAACGCCGGGGCTTGCAAGCCAGCAGGCTTACCGTG
TTCCCGCCACGACAAAAGGCGAAGACGACGACGACCCGTTCGGCCTTGGG
CTCGGATCCACCGCGACGCCCGCCGGGGCCTCGCCGCCACTACCGCTACC
ACAGCAGCAGCAGCAGCAGTTCTCCGAATTCTCGGCCCCTCCCCAACAGC
AGGGAGGTCTCTCCAATATGAGCGGACTCGGCGCGGGCTTACCCTCTGTC
GGGGGAGTGGGATCTGCGCCGCTTCTGCAAACGCCGGGGCTTGCAAGCCA
GCAGCAAACCCTGGCATACTCCCAAGACTTACACTCTCAACCGCAGGTAT
TGCCCCCGGGGGGAGGCGGGGGTGGGCAGACTGGGTTTACCAGCGGCGTT
ATACCCTCGGGGACAAGCGTCGTGCCCAAGAAGACCGTGGCGGCGGACGA
CCCGTTCCACGGGTTGTTCTAGCAAACCCTGGCATACTCCCAAGACTTAC
ACTCTCAACCGCAGGTATTGCCCCCGGGGGGAGGCGGGGGTGGGCAGACT
GGGTTTACCAGCGGCGTTATACCCTCGGGGACAAGCGTCGTGCCCAAGAA
GACCGTGGCGGCGGACGACCCGTTCCACGGGTTGTTCTAG
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