mRNA_H-elongata_contig16755.4213.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16755.4213.1
Unique NamemRNA_H-elongata_contig16755.4213.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5JT16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT16_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.120e-31
Identity = 54/110 (49.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLK 330
            +LD   SHVT+EVVK A  L I L+Q+PSH+SH++Q LDV +F S K  ITK L+AFP  +G R+P   +M+ ++ +A+  SF+ +Q+++SF G+G+WP+D +RA+GRL+
Sbjct:   97 VLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVVSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQ 206          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.680e-30
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKAT 336
            LLD   SHV+ EV+K A  L I LFQLPSHTSHI Q LDV AF S K ++T+ L +F  N G  LPL  +M  VI +A++ SFTP+ + +SF G+G+WP++ +RALGRLK T
Sbjct:  294 LLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLKGT 405          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 8.610e-30
Identity = 54/112 (48.21%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKAT 336
            +LD   SHVT+EV+K A  L I L+Q+PSH+SH++Q LDV +F S K  ITK L+AFP  +G R+P   +M+ ++ +A+  SF+ QQ+++SF G+G+WP+D +RA+GRL+  
Sbjct:  281 VLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGV 392          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5JPU1_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.500e-30
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKATR 339
            +LD   SH TF+ +  A +L I LFQLPSHTSHI Q LDV  F + K  +T+ LTA+PL  G R P+  +M  VI EA+R SFTP  +MA+F+G+GMWP++  +A+ RL + R
Sbjct:   34 VLDGHASHTTFDAITLAISLDIDLFQLPSHTSHITQPLDVGTFGTFKEELTRVLTAYPLKIGGRSPVKSDMAGVIAEAWRGSFTPANNMAAFKGAGMWPVNMKKAINRLHSKR 146          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5L259_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L259_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.510e-30
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKATR 339
            +LD   SH TF+ +  A +L I LFQLPSHTSHI Q LDV  F + K  +T+ LTA+PL  G R P+  +M  VI EA R SFTP  +MA+F+GSG+WP++ ++A+ RL + R
Sbjct:  168 VLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEACRGSFTPANNMAAFKGSGLWPVNVEKAINRLHSKR 280          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5KSS7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSS7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.260e-29
Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKATR 339
            +LD   SH TF+ +  A +L I LFQLPSHTSHI Q LDV  F + K  +T+ LTA+PL  G R P+  +M  VI EA+R SFTP  +MA+F+G+G+WP++ ++A+ RL + R
Sbjct:   53 VLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGIFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRGSFTPANNMAAFKGAGLWPVNMEKAINRLHSKR 165          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5JG26_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG26_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.950e-29
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKATR 339
            +LD   SH TFE +  A +L I LFQLPSHTSH+ Q LDV+ F + K  +TK L A+PL +G R P   +M  VI +A+  S TP  +++S  G+G+WP+D ++ALGRL +TR
Sbjct:  127 VLDGHASHTTFEAISLAISLDIDLFQLPSHTSHMTQPLDVSTFGTLKKQMTKVLNAYPLQNGGRSPGKRDMAGVIAQAWAGSLTPSNNISSLRGAGLWPVDMEKALGRLHSTR 239          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.570e-29
Identity = 53/112 (47.32%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKAT 336
            +LD   SHVT+EVVK A  L I L+Q+PSH+SH++Q LDV +F S K  ITK L+AFP  +G R+P   +M+ ++ +A+  SF+ +++ +SF G+G+WP+D +RA+GRL+  
Sbjct:  281 VLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGV 392          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.680e-29
Identity = 54/112 (48.21%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKAT 336
            +LD   SHVT+EVVK A  L I L+Q+PSH+SH++Q LDV +F S K  ITK L+AFP  +G R+P   +M+ ++ +A+  SF+ +Q+++SF G+G+WP+D +RA+GRL+  
Sbjct:  289 VLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGV 400          
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Match: A0A6H5J798_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J798_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.710e-29
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNITKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPLDADRALGRLKATR 339
            +LD   SH TF+ +  A +L I LFQLPSHTSHI Q L+V  F + K  +T+ LTA+PL  G R P+  +M  VI EA+R SFTP  +MA+F+G+G+WP++ ++A+ RL + R
Sbjct:  165 VLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLEVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRRSFTPANNMAAFKGAGLWPVNMEKAISRLHSKR 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16755.4213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT16_9PHAE1.120e-3149.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA3_9PHAE2.680e-3054.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI8.610e-3048.21Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JPU1_9PHAE9.500e-3050.44DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L259_9PHAE9.510e-3050.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KSS7_9PHAE1.260e-2949.56DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JG26_9PHAE1.950e-2948.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L5E2_9PHAE2.570e-2947.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK80_9PHAE2.680e-2948.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J798_9PHAE3.710e-2948.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16755contigH-elongata_contig16755:6465..6806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D8LN28
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.7193804-CDS-H-elongata_contig16755:6464..68061622929977.7193804-CDS-H-elongata_contig16755:6464..6806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16755 6465..6806 -
1691679232.0682566-CDS-H-elongata_contig16755:6464..68061691679232.0682566-CDS-H-elongata_contig16755:6464..6806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16755 6465..6806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16755.4213.1prot_H-elongata_contig16755.4213.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16755 6465..6806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16755.4213.1

>prot_H-elongata_contig16755.4213.1 ID=prot_H-elongata_contig16755.4213.1|Name=mRNA_H-elongata_contig16755.4213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LLDCLTSHVTFEVVKFANTLGIALFQLPSHTSHIIQSLDVAAFRSQKSNI
TKTLTAFPLNHGDRLPLNLNMVIVIVEAFRASFTPQQDMASFEGSGMWPL
DADRALGRLKATR*
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mRNA from alignment at H-elongata_contig16755:6465..6806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16755.4213.1 ID=mRNA_H-elongata_contig16755.4213.1|Name=mRNA_H-elongata_contig16755.4213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig16755:6465..6806- (Himanthalia elongata Himel1 dioecious)
TTGCTCGATTGCCTCACCTCGCACGTGACGTTCGAAGTCGTCAAGTTCGC AAATACACTCGGCATCGCCCTTTTTCAGCTGCCGTCCCACACTTCCCACA TCATCCAGTCGTTGGATGTCGCTGCTTTCAGATCGCAGAAGTCGAATATC ACTAAAACACTCACTGCCTTCCCGCTCAACCACGGAGACAGATTGCCCTT GAACCTCAACATGGTGATCGTGATCGTGGAGGCGTTTAGAGCGAGCTTTA CACCGCAGCAGGACATGGCATCGTTCGAGGGTTCAGGCATGTGGCCGTTG GACGCCGACCGGGCGTTAGGCCGCCTCAAAGCCACAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16755:6465..6806-

>mRNA_H-elongata_contig16755.4213.1 ID=mRNA_H-elongata_contig16755.4213.1|Name=mRNA_H-elongata_contig16755.4213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig16755:6465..6806- (Himanthalia elongata Himel1 dioecious)
TTGCTCGATTGCCTCACCTCGCACGTGACGTTCGAAGTCGTCAAGTTCGC
AAATACACTCGGCATCGCCCTTTTTCAGCTGCCGTCCCACACTTCCCACA
TCATCCAGTCGTTGGATGTCGCTGCTTTCAGATCGCAGAAGTCGAATATC
ACTAAAACACTCACTGCCTTCCCGCTCAACCACGGAGACAGATTGCCCTT
GAACCTCAACATGGTGATCGTGATCGTGGAGGCGTTTAGAGCGAGCTTTA
CACCGCAGCAGGACATGGCATCGTTCGAGGGTTCAGGCATGTGGCCGTTG
GACGCCGACCGGGCGTTAGGCCGCCTCAAAGCCACAAGGTAGTTGCTCGA
TTGCCTCACCTCGCACGTGACGTTCGAAGTCGTCAAGTTCGCAAATACAC
TCGGCATCGCCCTTTTTCAGCTGCCGTCCCACACTTCCCACATCATCCAG
TCGTTGGATGTCGCTGCTTTCAGATCGCAGAAGTCGAATATCACTAAAAC
ACTCACTGCCTTCCCGCTCAACCACGGAGACAGATTGCCCTTGAACCTCA
ACATGGTGATCGTGATCGTGGAGGCGTTTAGAGCGAGCTTTACACCGCAG
CAGGACATGGCATCGTTCGAGGGTTCAGGCATGTGGCCGTTGGACGCCGA
CCGGGCGTTAGGCCGCCTCAAAGCCACAAGGTAG
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