mRNA_H-elongata_contig16743.4206.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: D8LES4_ECTSI (CCT-theta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES4_ECTSI) HSP 1 Score: 172 bits (435), Expect = 3.800e-49 Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
VSDMCMHFIEKYEMMV+KV SKWELRR+CNAVHATALVRMGAPTPDEMG C+LVEVRE+GLRKVTVFSQ+DDDSRIATIVL AST SLLNDLE
Sbjct: 302 VSDMCMHFIEKYEMMVIKVLSKWELRRICNAVHATALVRMGAPTPDEMGDCALVEVREVGLRKVTVFSQDDDDSRIATIVLRASTQSLLNDLE 394
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A6H5KSW1_9PHAE (CCT-theta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW1_9PHAE) HSP 1 Score: 158 bits (399), Expect = 4.850e-45 Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSL 264
VSDMCMHFIEKYEMMV+KV SKWELRR+CNAVHATALVRMGAPTPDEMG C+LVEVRE+GLRKVTVFSQ+DDDSRIATIVL A + SL
Sbjct: 302 VSDMCMHFIEKYEMMVIKVLSKWELRRICNAVHATALVRMGAPTPDEMGDCALVEVREVGLRKVTVFSQDDDDSRIATIVLRARSVSL 389
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: K3WHS8_GLOUD (CCT-theta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHS8_GLOUD) HSP 1 Score: 136 bits (342), Expect = 9.730e-36 Identity = 61/93 (65.59%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKY+++ VK+QSKWELRR+C AV+A ALVR+GAPTPDEMG C V V+EIG +KVTVF+QED+D++I+TI+L ASTD++LND+E
Sbjct: 302 ISEMALHFLEKYKLLAVKIQSKWELRRLCRAVNANALVRLGAPTPDEMGLCDSVTVKEIGGKKVTVFNQEDEDAKISTIILRASTDNVLNDIE 394
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A425BWK5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425BWK5_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.110e-35 Identity = 61/93 (65.59%), Postives = 80/93 (86.02%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M MHF+EKY +M +K+QSKWELRR+C AV+A ALVR+GAPTPDEMG C V V+EIG +KVTVF Q+ +D++I+TIVL ASTD++LND+E
Sbjct: 180 ISEMAMHFLEKYNLMAIKIQSKWELRRLCRAVNANALVRLGAPTPDEMGFCDSVTVKEIGGKKVTVFQQDQEDAKISTIVLRASTDNVLNDIE 272
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A485KST6_9STRA (CCT-theta n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KST6_9STRA) HSP 1 Score: 134 bits (337), Expect = 4.950e-35 Identity = 58/93 (62.37%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKYE++ +++QSKWELRR+C AV+ATALVR+GAPTP+EMG C V+V+EIG +K+TVFSQ+++D++++TI+L ASTD++LNDLE
Sbjct: 302 ISEMALHFLEKYELLSIRIQSKWELRRLCRAVNATALVRLGAPTPEEMGFCDHVQVKEIGGKKITVFSQDEEDAKMSTIILRASTDNVLNDLE 394
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A067BSY5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BSY5_SAPPC) HSP 1 Score: 129 bits (324), Expect = 5.180e-35 Identity = 55/93 (59.14%), Postives = 82/93 (88.17%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKY+++ +++QSKWELRR+C AV+ATALVR+GAPTP+EMG C V V EIG +K+T+F Q+++D++++TI+L ASTD++LNDLE
Sbjct: 32 ISEMALHFLEKYKLLSIRIQSKWELRRLCRAVNATALVRLGAPTPEEMGFCDFVGVHEIGGKKITIFRQDEEDAKMSTIILRASTDNVLNDLE 124
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: H3G986_PHYRM (CCT-theta n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3G986_PHYRM) HSP 1 Score: 133 bits (334), Expect = 1.320e-34 Identity = 60/93 (64.52%), Postives = 80/93 (86.02%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKY +M +K+QSKWELRR+C AV+A A+VR+GAPTPDEMG C V V+EIG +KVTVF QE +D++I+TIVL ASTD++LND+E
Sbjct: 302 ISEMSLHFLEKYNLMAIKIQSKWELRRLCRAVNANAMVRLGAPTPDEMGFCDSVTVKEIGGKKVTVFEQEQEDAKISTIVLRASTDNVLNDIE 394
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: M4B3A9_HYAAE (CCT-theta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3A9_HYAAE) HSP 1 Score: 132 bits (333), Expect = 2.200e-34 Identity = 60/93 (64.52%), Postives = 80/93 (86.02%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKY +M +K+QSKWELRR+C AV+A ALVR+GAPTPDEMG C V V+EIG +KVTVF Q+ +D++I+TIVL ASTD++LND+E
Sbjct: 302 ISEMALHFLEKYNLMAIKIQSKWELRRLCRAVNANALVRLGAPTPDEMGFCDSVMVKEIGGKKVTVFQQDQEDAKISTIVLRASTDNVLNDIE 394
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A2D4C5B0_PYTIN (CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5B0_PYTIN) HSP 1 Score: 132 bits (331), Expect = 8.230e-34 Identity = 59/93 (63.44%), Postives = 81/93 (87.10%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M MHF+EKY++M +K+QSKWELRR+C AV+A ALVR+GAPTPDEMG C V V+EIG +KVT+F QE +D++++TIVL AST+++LND+E
Sbjct: 482 ISEMAMHFLEKYQLMAIKIQSKWELRRLCRAVNANALVRLGAPTPDEMGFCDSVMVKEIGGKKVTIFRQEKEDAKMSTIVLRASTENVLNDIE 574
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Match: A0A1W0AAN5_9STRA (CCT-theta (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAN5_9STRA) HSP 1 Score: 132 bits (331), Expect = 9.460e-34 Identity = 57/93 (61.29%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 1 VSDMCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLVEVREIGLRKVTVFSQEDDDSRIATIVLGASTDSLLNDLE 279
+S+M +HF+EKY+++ +++QSKWELRR+C AV+ATALVR+GAPTP+EMG C V V+E+G +KVT+FSQE++D++++TI+L ASTD++LNDLE
Sbjct: 316 ISEMALHFLEKYKLLSIRIQSKWELRRLCRAVNATALVRLGAPTPEEMGFCDHVAVQEVGGKKVTIFSQEEEDAKMSTIILRASTDNVLNDLE 408 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16743.4206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16743.4206.1 >prot_H-elongata_contig16743.4206.1 ID=prot_H-elongata_contig16743.4206.1|Name=mRNA_H-elongata_contig16743.4206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp MCMHFIEKYEMMVVKVQSKWELRRVCNAVHATALVRMGAPTPDEMGSCSLback to top mRNA from alignment at H-elongata_contig16743:5541..6788- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16743.4206.1 ID=mRNA_H-elongata_contig16743.4206.1|Name=mRNA_H-elongata_contig16743.4206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-elongata_contig16743:5541..6788- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16743:5541..6788- >mRNA_H-elongata_contig16743.4206.1 ID=mRNA_H-elongata_contig16743.4206.1|Name=mRNA_H-elongata_contig16743.4206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig16743:5541..6788- (Himanthalia elongata Himel1 dioecious)back to top |