mRNA_H-elongata_contig167239.4202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167239.4202.1
Unique NamemRNA_H-elongata_contig167239.4202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167239.4202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167239contigH-elongata_contig167239:567..1314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size748
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167239.4202.1prot_H-elongata_contig167239.4202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167239 729..1220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.7506902-UTR-H-elongata_contig167239:566..7281622929976.7506902-UTR-H-elongata_contig167239:566..728Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167239 567..728 +
1691679231.6537037-UTR-H-elongata_contig167239:566..7281691679231.6537037-UTR-H-elongata_contig167239:566..728Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167239 567..728 +
1622929976.7826214-UTR-H-elongata_contig167239:1220..13141622929976.7826214-UTR-H-elongata_contig167239:1220..1314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167239 1221..1314 +
1691679231.6727102-UTR-H-elongata_contig167239:1220..13141691679231.6727102-UTR-H-elongata_contig167239:1220..1314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167239 1221..1314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.7662065-CDS-H-elongata_contig167239:728..12201622929976.7662065-CDS-H-elongata_contig167239:728..1220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167239 729..1220 +
1691679231.6634183-CDS-H-elongata_contig167239:728..12201691679231.6634183-CDS-H-elongata_contig167239:728..1220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167239 729..1220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167239.4202.1

>prot_H-elongata_contig167239.4202.1 ID=prot_H-elongata_contig167239.4202.1|Name=mRNA_H-elongata_contig167239.4202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MAQVKVELEKRKYTAKPTKARSAYNILLEKRIARVEAIFDRLMSECKNGN
TNAGEGISKKRKQDTVKGPAGKWFANGTKGGSKCFNRTDDKIFCLEDTRG
VCGCNTCKVGKNGGFTRTRICSKCCSSPKAHKRASLYAARKSRRLMPIPE
SGVGGSEVIRQFS*
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mRNA from alignment at H-elongata_contig167239:567..1314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167239.4202.1 ID=mRNA_H-elongata_contig167239.4202.1|Name=mRNA_H-elongata_contig167239.4202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig167239:567..1314+ (Himanthalia elongata Himel1 dioecious)
CAGGACGCTCTTTCGGTGAGGGATGATGAATCAACGTCCGAAAAGGGGGA
CAAAGAATCTGGGCGAATCGGTAGCGCCAGGACTGGTAGTATTCCTGGAA
AAAGTGGAGCGGGCAACCGAGGACCAAAGGGCGCAGAGAAGGGAGGGAAG
AAGGCGGTAGCAATGGCTCAGGTGAAGGTGGAGCTCGAGAAAAGAAAATA
CACCGCCAAGCCCACGAAGGCCCGGAGCGCTTACAACATTTTGTTGGAGA
AGCGTATCGCACGGGTGGAGGCGATTTTTGACCGTCTCATGTCCGAGTGC
AAAAACGGTAACACAAATGCGGGAGAGGGTATAAGTAAGAAACGCAAGCA
GGACACAGTCAAGGGGCCGGCCGGCAAGTGGTTCGCTAACGGCACCAAAG
GGGGCTCTAAGTGCTTCAATCGTACCGATGACAAGATATTCTGTTTGGAA
GACACGCGTGGTGTTTGCGGTTGCAATACATGTAAAGTAGGTAAGAACGG
GGGCTTCACGAGAACTAGGATTTGCAGCAAATGTTGTTCGTCCCCGAAAG
CTCACAAAAGGGCATCATTGTATGCGGCTAGGAAATCGCGGAGGCTCATG
CCTATTCCCGAAAGTGGGGTGGGTGGCAGTGAGGTCATAAGACAGTTTTC
GTAAAGTGCTGAGGAAGAGGAAAGGTTCTTGTGAAATTTGTTTTTAAGAA
ATTAAGATTATCCATGGGAAATCTCTCTATGTGTCAGTTGCGTGTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig167239:567..1314+

>mRNA_H-elongata_contig167239.4202.1 ID=mRNA_H-elongata_contig167239.4202.1|Name=mRNA_H-elongata_contig167239.4202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig167239:567..1314+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGGTGAAGGTGGAGCTCGAGAAAAGAAAATACACCGCCAAGCC
CACGAAGGCCCGGAGCGCTTACAACATTTTGTTGGAGAAGCGTATCGCAC
GGGTGGAGGCGATTTTTGACCGTCTCATGTCCGAGTGCAAAAACGGTAAC
ACAAATGCGGGAGAGGGTATAAGTAAGAAACGCAAGCAGGACACAGTCAA
GGGGCCGGCCGGCAAGTGGTTCGCTAACGGCACCAAAGGGGGCTCTAAGT
GCTTCAATCGTACCGATGACAAGATATTCTGTTTGGAAGACACGCGTGGT
GTTTGCGGTTGCAATACATGTAAAGTAGGTAAGAACGGGGGCTTCACGAG
AACTAGGATTTGCAGCAAATGTTGTTCGTCCCCGAAAGCTCACAAAAGGG
CATCATTGTATGCGGCTAGGAAATCGCGGAGGCTCATGCCTATTCCCGAA
AGTGGGGTGGGTGGCAGTGAGGTCATAAGACAGTTTTCGTAAATGGCTCA
GGTGAAGGTGGAGCTCGAGAAAAGAAAATACACCGCCAAGCCCACGAAGG
CCCGGAGCGCTTACAACATTTTGTTGGAGAAGCGTATCGCACGGGTGGAG
GCGATTTTTGACCGTCTCATGTCCGAGTGCAAAAACGGTAACACAAATGC
GGGAGAGGGTATAAGTAAGAAACGCAAGCAGGACACAGTCAAGGGGCCGG
CCGGCAAGTGGTTCGCTAACGGCACCAAAGGGGGCTCTAAGTGCTTCAAT
CGTACCGATGACAAGATATTCTGTTTGGAAGACACGCGTGGTGTTTGCGG
TTGCAATACATGTAAAGTAGGTAAGAACGGGGGCTTCACGAGAACTAGGA
TTTGCAGCAAATGTTGTTCGTCCCCGAAAGCTCACAAAAGGGCATCATTG
TATGCGGCTAGGAAATCGCGGAGGCTCATGCCTATTCCCGAAAGTGGGGT
GGGTGGCAGTGAGGTCATAAGACAGTTTTCGTAA
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