mRNA_H-elongata_contig16721.4200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16721.4200.1
Unique NamemRNA_H-elongata_contig16721.4200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.310e-49
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:    1 RLEGLRMVPMRALESQDPSDAWAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHRLALSVDAPWQV 339
            RL+ LR VP RALESQDP+DAWAA+GVLVSKS RRQAANGGS+ +WTLSDLSR++++VS+FLF+EALGSHWT CEGTL+AV+ AKVLP  G  GGGG    RLA SVD+PWQV
Sbjct:   12 RLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKG--GGGGNAPQRLAFSVDSPWQV 122
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.400e-46
Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 RLEGLRMVPMRALESQDPSDAWAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHRLALSVDAPWQV 339
            RL+ LR VP RALESQDP+DAWAA+GVLVSKS RRQAANGGS+ +WTLSDLSR++++VS+FLF+EALGSHWT CEGTL+AV+ AKVLP  G  G GG    RLA SVD+PWQV
Sbjct:  125 RLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKG--GDGGNAPQRLAFSVDSPWQV 235
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.430e-17
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 RLEGLRMVPMRALESQDPSDAWAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHRLALSVDAPWQV 339
            +L+ L  +  +ALES DP  AWA +GVLV KS +R  ++G  +V W LS L+    + ++ L ++AL SHW+ CEG+++ ++ A  LP    +  G      L  + DA WQV
Sbjct:   31 KLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP----LVFAADASWQV 139
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: A0A5D6Y137_9STRA (zf-primase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y137_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.380e-12
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    4 LEGLRMVPMRALESQ------DPSDAWAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHR---LALSVDAPWQVC 342
            L   R +P+ +L+++      D +  WA +GVL  K+  + AANG ++++W+LSDL+  +  ++VFLF  A  +HW   EG +VAV++A +LP         K  H    +AL   A + +C
Sbjct:   80 LSARRFLPLHSLDTEPRSTFTDDTMDWATIGVLTRKTLSKAAANGATFMVWSLSDLNGTE--LAVFLFDAAYEAHWREVEGAVVAVLNAALLPATEKNRFAFKVAHANEVVALGRAADFGIC 199
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: K3WDI7_GLOUD (zf-primase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDI7_GLOUD)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-11
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   64 WAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLP 264
            W  +GVL  K+  + AA+GGS+++W+LSDL+  D ++ VFLF +A  +HW   EG++VAV++A +LP
Sbjct:  151 WVTIGVLSRKTMSKAAASGGSFMVWSLSDLN--DTELGVFLFGDAYEAHWKEIEGSIVAVLNAALLP 215
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: A0A662WYA4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYA4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.280e-9
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   64 WAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLP 264
            W  +GVL+ K+  +  ANG ++++W LSDL+  +  + VFLF +A  +HW    G++VA+M+A +LP
Sbjct:  119 WLTIGVLIRKTLSKPTANGSTFMVWGLSDLTGTE--LGVFLFDDAYAAHWKELTGSVVALMNAALLP 183
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BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Match: A0A0R3WEJ2_TAEAS (Protein MCM10 homolog n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3WEJ2_TAEAS)

HSP 1 Score: 52.4 bits (124), Expect = 1.930e-5
Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   73 LGVLVSKSTRRQAANGGSYVIWTLSDL------SRKDHDVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHRLALSVDA 327
            +GV+ SK    ++ N   + IW L+DL      +   H++++FLF       W   EGT+VA++  K+LPPN ++     N   L+++VD+
Sbjct:  602 VGVIGSKMPPHRSRNNKIFSIWRLTDLMSVGTGAPNGHNINLFLFGAVHEKLWKEPEGTVVAILKPKLLPPNENSNLTSTNGTVLSITVDS 692
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16721.4200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LM23_ECTSI2.310e-4973.45Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5KS36_9PHAE1.400e-4672.57Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835YRW3_9STRA2.430e-1738.05Protein MCM10 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A5D6Y137_9STRA5.380e-1233.61zf-primase domain-containing protein n=1 Tax=Pythi... [more]
K3WDI7_GLOUD2.760e-1146.27zf-primase domain-containing protein n=1 Tax=Globi... [more]
A0A662WYA4_9STRA9.280e-940.30Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A0R3WEJ2_TAEAS1.930e-531.87Protein MCM10 homolog n=1 Tax=Taenia asiatica TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16721contigH-elongata_contig16721:2110..2454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.8e-39
Seed eggNOG ortholog2880.D8LM23
Preferred nameMCM10
KEGG koko:K10736
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG3056@1,KOG3056@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.4618711-CDS-H-elongata_contig16721:2109..24361622929976.4618711-CDS-H-elongata_contig16721:2109..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16721 2110..2436 -
1691679231.569171-CDS-H-elongata_contig16721:2109..24361691679231.569171-CDS-H-elongata_contig16721:2109..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16721 2110..2436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.4760048-UTR-H-elongata_contig16721:2436..24541622929976.4760048-UTR-H-elongata_contig16721:2436..2454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16721 2437..2454 -
1691679231.5900567-UTR-H-elongata_contig16721:2436..24541691679231.5900567-UTR-H-elongata_contig16721:2436..2454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16721 2437..2454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16721.4200.1prot_H-elongata_contig16721.4200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16721 2110..2436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16721.4200.1

>prot_H-elongata_contig16721.4200.1 ID=prot_H-elongata_contig16721.4200.1|Name=mRNA_H-elongata_contig16721.4200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MVPMRALESQDPSDAWAALGVLVSKSTRRQAANGGSYVIWTLSDLSRKDH
DVSVFLFREALGSHWTTCEGTLVAVMSAKVLPPNGSTGGGGKNDHRLALS
VDAPWQVC*
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mRNA from alignment at H-elongata_contig16721:2110..2454-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16721.4200.1 ID=mRNA_H-elongata_contig16721.4200.1|Name=mRNA_H-elongata_contig16721.4200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig16721:2110..2454- (Himanthalia elongata Himel1 dioecious)
CGCCTGGAGGGGCTGCGAATGGTGCCGATGCGCGCGCTCGAGAGCCAGGA
CCCTTCCGACGCGTGGGCAGCACTCGGAGTACTTGTGTCGAAGAGTACCC
GACGGCAGGCCGCCAACGGAGGCAGCTACGTTATTTGGACCCTGAGCGAC
CTGTCGCGAAAGGACCACGATGTTTCCGTGTTCCTGTTTCGCGAGGCCCT
TGGCTCTCACTGGACTACGTGCGAAGGGACGCTCGTGGCGGTAATGAGCG
CCAAGGTTTTGCCACCGAACGGTAGCACAGGCGGCGGTGGGAAGAATGAT
CATCGATTGGCGCTGTCAGTAGACGCACCGTGGCAGGTATGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16721:2110..2454-

>mRNA_H-elongata_contig16721.4200.1 ID=mRNA_H-elongata_contig16721.4200.1|Name=mRNA_H-elongata_contig16721.4200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig16721:2110..2454- (Himanthalia elongata Himel1 dioecious)
ATGGTGCCGATGCGCGCGCTCGAGAGCCAGGACCCTTCCGACGCGTGGGC
AGCACTCGGAGTACTTGTGTCGAAGAGTACCCGACGGCAGGCCGCCAACG
GAGGCAGCTACGTTATTTGGACCCTGAGCGACCTGTCGCGAAAGGACCAC
GATGTTTCCGTGTTCCTGTTTCGCGAGGCCCTTGGCTCTCACTGGACTAC
GTGCGAAGGGACGCTCGTGGCGGTAATGAGCGCCAAGGTTTTGCCACCGA
ACGGTAGCACAGGCGGCGGTGGGAAGAATGATCATCGATTGGCGCTGTCA
GTAGACGCACCGTGGCAGGTATGTTAAATGGTGCCGATGCGCGCGCTCGA
GAGCCAGGACCCTTCCGACGCGTGGGCAGCACTCGGAGTACTTGTGTCGA
AGAGTACCCGACGGCAGGCCGCCAACGGAGGCAGCTACGTTATTTGGACC
CTGAGCGACCTGTCGCGAAAGGACCACGATGTTTCCGTGTTCCTGTTTCG
CGAGGCCCTTGGCTCTCACTGGACTACGTGCGAAGGGACGCTCGTGGCGG
TAATGAGCGCCAAGGTTTTGCCACCGAACGGTAGCACAGGCGGCGGTGGG
AAGAATGATCATCGATTGGCGCTGTCAGTAGACGCACCGTGGCAGGTATG
TTAA
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