mRNA_H-elongata_contig167106.4198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig167106.4198.1
Unique Name	mRNA_H-elongata_contig167106.4198.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.100e-30
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD   IR+RW RWF  LLNTKSP ++ +  + + +WP   PL   P+++E+   +R +A  KAVGP+ +  E  K
Sbjct:   46 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIK 165

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.480e-30
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPE 336
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+
Sbjct:  107 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 218

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 8.570e-30
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1

Query:    4 VRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            VR+LE + REGD+AGFY+HL  +++E K+  +S  IKDE G +LRD   IR+RW RWF  LLNTKSP ++ +  + + +WP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:   24 VRQLEKKSREGDQAGFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 142

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.760e-29
Identity = 53/117 (45.30%), Postives = 78/117 (66.67%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVE 351
            +VR+LE + REGD+AGFY+HLK +++E K+  +S   KDE G ++RD   IR+RW RWF  LLNTKSP ++ +  + + QWP   PL   P++ E+   +R +A  KAVGP+ +  E
Sbjct:   24 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAE 140

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5K397_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K397_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.770e-29
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPE 336
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD   IR+RW RWF  LLNTKSP ++ +  + + +WP   PL   P++ E+   +R +A  KAVGP+
Sbjct:   82 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPD 193

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.660e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:  257 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 376

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.700e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:   42 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 161

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.710e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:  395 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 514

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.740e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:  507 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 626

[Close]

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.770e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVLIRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDIRSLAKEKAVGPEGVSVEPFK 360
            +VR+LE + REGD+AGFY+HLK +++E K+  +S  IKDE G +LRD  L R+RW RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+   +R +A  KAVGP+ +  E  K
Sbjct:  628 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 747

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot

BLAST of mRNA_H-elongata_contig167106.4198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L012_9PHAE	1.100e-30	45.83	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3I4_9PHAE	2.480e-30	49.11	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KXZ7_9PHAE	8.570e-30	45.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJR4_9PHAE	1.760e-29	45.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K397_9PHAE	1.770e-29	47.32	Uncharacterized protein (Fragment) n=3 Tax=Ectocar...	[more]
A0A6H5K8Z5_9PHAE	5.660e-29	47.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUB0_9PHAE	5.700e-29	47.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC90_9PHAE	5.710e-29	47.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JQH5_9PHAE	5.740e-29	47.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KDI8_9PHAE	5.770e-29	47.50	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig167106	contig	H-elongata_contig167106:34..393 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	360
Cds size	360
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929976.1704834-CDS-H-elongata_contig167106:33..393	1622929976.1704834-CDS-H-elongata_contig167106:33..393	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig167106 34..393 -
1691679231.444007-CDS-H-elongata_contig167106:33..393	1691679231.444007-CDS-H-elongata_contig167106:33..393	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig167106 34..393 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig167106.4198.1	prot_H-elongata_contig167106.4198.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig167106 34..393 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig167106:34..393-
coding sequence from alignment at H-elongata_contig167106:34..393-

protein sequence of mRNA_H-elongata_contig167106.4198.1

>prot_H-elongata_contig167106.4198.1 ID=prot_H-elongata_contig167106.4198.1|Name=mRNA_H-elongata_contig167106.4198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
FVRKLETRVREGDRAGFYKHLKTMNLERKQDCSSAYIKDEGGILLRDAVL
IRERWVRWFQTLLNTKSPALEPNITEGIDQWPENTPLGIQPTMQELTNDI
RSLAKEKAVGPEGVSVEPFK

mRNA from alignment at H-elongata_contig167106:34..393-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig167106.4198.1 ID=mRNA_H-elongata_contig167106.4198.1|Name=mRNA_H-elongata_contig167106.4198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig167106:34..393- (Himanthalia elongata Himel1 dioecious)
TTCGTCCGCAAACTTGAAACACGCGTTCGAGAAGGCGACCGGGCGGGATT
CTACAAGCATCTGAAGACGATGAATTTGGAACGGAAGCAAGACTGCAGCT
CGGCGTACATCAAAGACGAGGGCGGCATACTCCTGAGGGACGCTGTACTT
ATCCGCGAACGATGGGTCCGTTGGTTCCAAACCCTATTGAACACCAAATC
GCCGGCGCTCGAGCCGAACATCACTGAAGGCATCGACCAATGGCCGGAGA
ACACGCCGCTGGGAATTCAGCCCACAATGCAGGAGTTGACAAACGACATC
CGCTCGTTAGCGAAAGAAAAGGCTGTTGGACCGGAGGGAGTCTCGGTTGA
ACCGTTCAAG

Coding sequence (CDS) from alignment at H-elongata_contig167106:34..393-

>mRNA_H-elongata_contig167106.4198.1 ID=mRNA_H-elongata_contig167106.4198.1|Name=mRNA_H-elongata_contig167106.4198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig167106:34..393- (Himanthalia elongata Himel1 dioecious)
TTCGTCCGCAAACTTGAAACACGCGTTCGAGAAGGCGACCGGGCGGGATT
CTACAAGCATCTGAAGACGATGAATTTGGAACGGAAGCAAGACTGCAGCT
CGGCGTACATCAAAGACGAGGGCGGCATACTCCTGAGGGACGCTGTACTT
ATCCGCGAACGATGGGTCCGTTGGTTCCAAACCCTATTGAACACCAAATC
GCCGGCGCTCGAGCCGAACATCACTGAAGGCATCGACCAATGGCCGGAGA
ACACGCCGCTGGGAATTCAGCCCACAATGCAGGAGTTGACAAACGACATC
CGCTCGTTAGCGAAAGAAAAGGCTGTTGGACCGGAGGGAGTCTCGGTTGA
ACCGTTCAAGTTCGTCCGCAAACTTGAAACACGCGTTCGAGAAGGCGACC
GGGCGGGATTCTACAAGCATCTGAAGACGATGAATTTGGAACGGAAGCAA
GACTGCAGCTCGGCGTACATCAAAGACGAGGGCGGCATACTCCTGAGGGA
CGCTGTACTTATCCGCGAACGATGGGTCCGTTGGTTCCAAACCCTATTGA
ACACCAAATCGCCGGCGCTCGAGCCGAACATCACTGAAGGCATCGACCAA
TGGCCGGAGAACACGCCGCTGGGAATTCAGCCCACAATGCAGGAGTTGAC
AAACGACATCCGCTCGTTAGCGAAAGAAAAGGCTGTTGGACCGGAGGGAG
TCTCGGTTGAACCGTTCAAG