mRNA_H-elongata_contig167051.4193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167051.4193.1
Unique NamemRNA_H-elongata_contig167051.4193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: D7G592_ECTSI (Peroxisomal membrane protein PEX14 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G592_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.930e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   10 MREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            MREDQ+ NGV FLVHPK KTAPLSQRISFLE+KGLT +EISAALSR
Sbjct:    1 MREDQIVNGVNFLVHPKAKTAPLSQRISFLENKGLTAEEISAALSR 46
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A836C861_9STRA (Peroxisomal membrane protein PEX14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C861_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.730e-13
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   10 MREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            +RE QVE+GVKFL HP+V+ +PLSQRISFLE KGLTP+EIS A++R
Sbjct:    2 VRESQVESGVKFLSHPQVRASPLSQRISFLEKKGLTPEEISEAMTR 47
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A225UR16_9STRA (Peroxisomal membrane protein PEX14 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UR16_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.420e-12
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 SMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAAL 141
            S+R++ V+ GV+FL HPKV+  PLS+R+ FLE KGLTPKEI+AAL
Sbjct:    2 SVRDELVQQGVRFLQHPKVQDTPLSERLQFLEKKGLTPKEIAAAL 46
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: K3XB39_GLOUD (Peroxisomal membrane protein PEX14 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB39_GLOUD)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 MREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            MRE+ VENGVKFL HP V+T PLS+R+SFLE KG+T +EI  A+ R
Sbjct:    1 MREEMVENGVKFLRHPNVQTTPLSERVSFLEQKGMTKEEIQEAIER 46
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A225UIE9_9STRA (Peroxisomal membrane protein PEX14 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UIE9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.950e-11
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    7 SMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            +MRE+ VENG+KFL HP V++ PLS+R+SFLE+KG+T +EI  A+ R
Sbjct:    2 AMREEMVENGLKFLQHPNVQSTPLSERVSFLENKGMTKEEIQEAIER 48
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: M4BS25_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BS25_HYAAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.990e-11
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 MREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            MRED VENG+KFL HP V++ PLS+R+SFLE KG+T +EI  A+ R
Sbjct:    1 MREDLVENGLKFLQHPSVQSTPLSERVSFLEGKGMTKEEIQEAIDR 46
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BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A2D4BK06_PYTIN (Carbohydrate esterase, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK06_PYTIN)

HSP 1 Score: 64.3 bits (155), Expect = 7.990e-11
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 SMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAAL 141
            ++RED V+ GV+FL HPKV+  PLS+R+SFLE KGLTP+EI+ AL
Sbjct:    2 AIREDLVQQGVRFLQHPKVQNTPLSERLSFLEKKGLTPQEIARAL 46
[Close]
BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A2P4WZI4_9STRA (Peroxisomal membrane protein PEX14 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZI4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.120e-11
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 SMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSR 147
            +MRE+ VENG+KFL HP V++ PLS+R+SFLE KG+T +EI  A+ R
Sbjct:    2 AMREEMVENGLKFLQHPNVQSTPLSERVSFLEGKGMTKEEIQEAIER 48
[Close]
BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: A0A835PZV8_VANPL (Peroxisomal membrane protein PEX14 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PZV8_VANPL)

HSP 1 Score: 64.3 bits (155), Expect = 9.290e-11
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 PESMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSRV 150
            PE MREDQV+N VKFL HPKV+ +P+  R SFLE KGLT +EI  A  RV
Sbjct:   49 PEPMREDQVQNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRV 98
[Close]
BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Match: I1HB61_BRADI (Peroxisomal membrane protein PEX14 n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HB61_BRADI)

HSP 1 Score: 64.3 bits (155), Expect = 9.520e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 PESMREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSRV 150
            P+ +RED V+N VKFL HPKVK +P+S R SFLE KGLT +EI  A  RV
Sbjct:   28 PQIIREDYVQNAVKFLAHPKVKGSPVSYRYSFLEKKGLTKEEIDEAFRRV 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167051.4193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G592_ECTSI4.930e-1684.78Peroxisomal membrane protein PEX14 n=2 Tax=Ectocar... [more]
A0A836C861_9STRA4.730e-1371.74Peroxisomal membrane protein PEX14 n=1 Tax=Tribone... [more]
A0A225UR16_9STRA8.420e-1264.44Peroxisomal membrane protein PEX14 (Fragment) n=1 ... [more]
K3XB39_GLOUD2.000e-1165.22Peroxisomal membrane protein PEX14 n=1 Tax=Globisp... [more]
A0A225UIE9_9STRA4.950e-1159.57Peroxisomal membrane protein PEX14 (Fragment) n=1 ... [more]
M4BS25_HYAAE6.990e-1163.04Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2D4BK06_PYTIN7.990e-1164.44Carbohydrate esterase, putative n=2 Tax=Pythium in... [more]
A0A2P4WZI4_9STRA9.120e-1159.57Peroxisomal membrane protein PEX14 (Fragment) n=1 ... [more]
A0A835PZV8_VANPL9.290e-1164.00Peroxisomal membrane protein PEX14 n=1 Tax=Vanilla... [more]
I1HB61_BRADI9.520e-1162.00Peroxisomal membrane protein PEX14 n=2 Tax=Brachyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167051contigH-elongata_contig167051:408..721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3e-13
Seed eggNOG ortholog2880.D7G592
Preferred namePEX14
KEGG koko:K13343,ko:K16284
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000226,GO:0001650,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006605,GO:0006625,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007031,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010970,GO:0015031,GO:0015631,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016043,GO:0016558,GO:0016560,GO:0016561,GO:0016567,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0030674,GO:0030705,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0031903,GO:0031974,GO:0031981,GO:0032091,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034453,GO:0034613,GO:0036211,GO:0036250,GO:0042579,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043393,GO:0043412,GO:0043433,GO:0043574,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044721,GO:0044743,GO:0045184,GO:0045892,GO:0045934,GO:0046907,GO:0047485,GO:0048487,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051090,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0055085,GO:0060090,GO:0060255,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0098588,GO:0098805,GO:0099111,GO:0140110,GO:1901090,GO:1901091,GO:1901093,GO:1901094,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:1990351,GO:1990415,GO:1990429,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.peroxisome transport along microtubule
EggNOG OGsKOG2629@1,KOG2629@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size150
Cds size141
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167051.4193.1prot_H-elongata_contig167051.4193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167051 408..712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.7776265-CDS-H-elongata_contig167051:407..4491622929975.7776265-CDS-H-elongata_contig167051:407..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167051 408..449 -
1691679231.234659-CDS-H-elongata_contig167051:407..4491691679231.234659-CDS-H-elongata_contig167051:407..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167051 408..449 -
1622929975.791517-CDS-H-elongata_contig167051:613..7121622929975.791517-CDS-H-elongata_contig167051:613..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167051 614..712 -
1691679231.2690887-CDS-H-elongata_contig167051:613..7121691679231.2690887-CDS-H-elongata_contig167051:613..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167051 614..712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.8079712-UTR-H-elongata_contig167051:712..7211622929975.8079712-UTR-H-elongata_contig167051:712..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167051 713..721 -
1691679231.2767403-UTR-H-elongata_contig167051:712..7211691679231.2767403-UTR-H-elongata_contig167051:712..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167051 713..721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167051.4193.1

>prot_H-elongata_contig167051.4193.1 ID=prot_H-elongata_contig167051.4193.1|Name=mRNA_H-elongata_contig167051.4193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MREDQVENGVKFLVHPKVKTAPLSQRISFLESKGLTPKEISAALSRV
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mRNA from alignment at H-elongata_contig167051:408..721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167051.4193.1 ID=mRNA_H-elongata_contig167051.4193.1|Name=mRNA_H-elongata_contig167051.4193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=314bp|location=Sequence derived from alignment at H-elongata_contig167051:408..721- (Himanthalia elongata Himel1 dioecious)
CCGGAGTCGATGAGGGAGGATCAGGTGGAAAATGGCGTGAAGTTCCTGGT
GCATCCGAAGGTCAAGACCGCTCCTTTGTCTCAAAGGATTAGCTTCTTAG
AGAGCAAGGTAACGCTCATCTTTCCGATTTTACTATACTGAAGAAAAGGT
CAAGGGTTCGAAAGTTATATTTCAGTTGGACTTACCACGGTTTTACGCTG
CCCCCTCATCTGAGTATCACCCGCAGCGCCTCCCCATCTTCAATTTCCTA
TATTATCTGCCTTTGGACCCAGGGGCTAACACCTAAGGAGATATCAGCGG
CTTTGTCTCGCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig167051:408..721-

>mRNA_H-elongata_contig167051.4193.1 ID=mRNA_H-elongata_contig167051.4193.1|Name=mRNA_H-elongata_contig167051.4193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig167051:408..721- (Himanthalia elongata Himel1 dioecious)
ATGAGGGAGGATCAGGTGGAAAATGGCGTGAAGTTCCTGGTGCATCCGAA
GGTCAAGACCGCTCCTTTGTCTCAAAGGATTAGCTTCTTAGAGAGCAAGA
TGAGGGAGGATCAGGTGGAAAATGGCGTGAAGTTCCTGGTGCATCCGAAG
GTCAAGACCGCTCCTTTGTCTCAAAGGATTAGCTTCTTAGAGAGCAAGGG
GCTAACACCTAAGGAGATATCAGCGGCTTTGTCTCGCGTGGGGCTAACAC
CTAAGGAGATATCAGCGGCTTTGTCTCGCGTG
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