mRNA_H-elongata_contig167021.4191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167021.4191.1
Unique NamemRNA_H-elongata_contig167021.4191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A1Z5JBY6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBY6_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 4.930e-8
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 QYVAAIRRTLRV-GGVWINCGPLHWHNKAALALSLDEMLALVAGSGFHV-EAVERFAPSAYRVEDG-ERSLKVEEFRPVFWVAILE 249
            +Y+A I + L+  GG+W+N GPL WH K+ + LS DE+ +L+   GF + E     AP  YR  D   RS   + + P+ +VA+L+
Sbjct:  332 EYIAMITKLLKPKGGMWVNVGPLQWHQKSLIRLSADELYSLIEEVGFKIMEWGVDVAPIEYRSSDKLVRSTHYDAYCPLRFVAVLD 417
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A1Z5JPV2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPV2_FISSO)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:    1 QYVAAIRRTLRV-GGVWINCGPLHWHNKAALALSLDEMLALVAGSGFHV-EAVERFAPSAYRVEDGE-RSLKVEEFRPVFWVAIL 246
            +Y+  I + LR  GG+W+N GPL WH K+ +  S DE+  ++   GF + E     AP  YR  D   RS   + + P+ +VA+L
Sbjct:  333 EYITMITKLLRPKGGMWVNVGPLQWHQKSQIRFSADELYNIIEEVGFQIMEWGVDVAPIEYRSSDKVVRSTHYDAYCPLRFVAVL 417
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A482SXY4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXY4_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 2.270e-6
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 QYVAAIRRTLRVGGVWINCGPLHWHNKAALALSLDEMLALVAGSGFHVEAVERFAPSAYRVEDGERSLKVE 213
            +Y+  IR  LR  G+WIN GPLH+HN  A+  S  +M+ ++   GF +   ER   S Y  E+ E+S+K E
Sbjct:  106 EYLEVIRHVLRDNGIWINAGPLHYHNPVAVPYSYKDMMQIIQLIGFELLHEERITMS-YCGEE-EQSMKPE 174
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A2V1DME2_9PLEO (N2227-domain-containing protein n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1DME2_9PLEO)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-5
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:    1 QYVAAIRRTLRVGGVWINCGPLHWHNKAALALSLDEMLALVAGSGFHVEAVERFAPSAYRVEDG 192
             Y + I   L+ GG W+N GPL +     + LSLDE++ +V G GFH E +     S Y  EDG
Sbjct:  298 SYFSTIHALLKKGGKWVNFGPLMYGTNPYVQLSLDEIVRVVEGMGFHFEDM----ASVYESEDG 357
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A2N1J7X0_9BASI (Uncharacterized protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1J7X0_9BASI)

HSP 1 Score: 50.8 bits (120), Expect = 2.500e-5
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 QYVAAIRRTLRVGGVWINCGPLHWH--NKAA--LALSLDEMLALVAGSGFHVE 147
            +Y+  I  TLR+GG W+N GPL WH  N AA  L L+L+E++ L    GF +E
Sbjct:  292 RYMEVINHTLRLGGYWVNLGPLQWHFENDAAPSLELTLEELVPLFGMMGFELE 344
[Close]
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Match: A0A165DQN7_9APHY (N2227-domain-containing protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165DQN7_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 3.470e-5
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 QYVAAIRRTLRVGGVWINCGPLHWHN--KAALALSLDEMLALVAGSGFHVE 147
            + +  +   LR GG WIN GPL W    +AA+ LSL+E++ALVA +GF VE
Sbjct:  315 ETIEHVHELLRPGGTWINLGPLLWTGGGQAAVELSLEEVMALVAMTGFRVE 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167021.4191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1Z5JBY6_FISSO4.930e-838.37Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JPV2_FISSO1.120e-636.47Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A482SXY4_9ARCH2.270e-640.85Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2V1DME2_9PLEO1.860e-540.63N2227-domain-containing protein n=1 Tax=Periconia ... [more]
A0A2N1J7X0_9BASI2.500e-547.17Uncharacterized protein n=1 Tax=Malassezia vespert... [more]
A0A165DQN7_9APHY3.470e-549.02N2227-domain-containing protein n=1 Tax=Laetiporus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167021contigH-elongata_contig167021:47..313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog159749.K0SW67
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
EggNOG free text desc.N2227
EggNOG OGs2XCRM@2836,KOG2798@1,KOG2798@2759
EC2.1.1.22
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.6844273-CDS-H-elongata_contig167021:46..3131622929975.6844273-CDS-H-elongata_contig167021:46..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167021 47..313 +
1691679231.1964655-CDS-H-elongata_contig167021:46..3131691679231.1964655-CDS-H-elongata_contig167021:46..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167021 47..313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167021.4191.1prot_H-elongata_contig167021.4191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167021 47..313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167021.4191.1

>prot_H-elongata_contig167021.4191.1 ID=prot_H-elongata_contig167021.4191.1|Name=mRNA_H-elongata_contig167021.4191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
QYVAAIRRTLRVGGVWINCGPLHWHNKAALALSLDEMLALVAGSGFHVEA
VERFAPSAYRVEDGERSLKVEEFRPVFWVAILEEGRRE*
back to top

mRNA from alignment at H-elongata_contig167021:47..313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167021.4191.1 ID=mRNA_H-elongata_contig167021.4191.1|Name=mRNA_H-elongata_contig167021.4191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig167021:47..313+ (Himanthalia elongata Himel1 dioecious)
CAGTACGTTGCCGCGATCCGCCGCACGCTGAGGGTGGGTGGAGTGTGGAT
CAACTGCGGCCCCCTGCACTGGCACAACAAGGCAGCCCTCGCGCTTAGCC
TAGACGAGATGCTGGCCCTCGTTGCCGGGTCGGGTTTCCACGTGGAGGCC
GTAGAGCGCTTCGCGCCGAGCGCCTATAGAGTGGAGGATGGAGAGCGGTC
GCTGAAGGTGGAAGAGTTTAGGCCCGTCTTCTGGGTCGCGATTTTAGAAG
AGGGACGCCGGGAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167021:47..313+

>mRNA_H-elongata_contig167021.4191.1 ID=mRNA_H-elongata_contig167021.4191.1|Name=mRNA_H-elongata_contig167021.4191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig167021:47..313+ (Himanthalia elongata Himel1 dioecious)
CAGTACGTTGCCGCGATCCGCCGCACGCTGAGGGTGGGTGGAGTGTGGAT
CAACTGCGGCCCCCTGCACTGGCACAACAAGGCAGCCCTCGCGCTTAGCC
TAGACGAGATGCTGGCCCTCGTTGCCGGGTCGGGTTTCCACGTGGAGGCC
GTAGAGCGCTTCGCGCCGAGCGCCTATAGAGTGGAGGATGGAGAGCGGTC
GCTGAAGGTGGAAGAGTTTAGGCCCGTCTTCTGGGTCGCGATTTTAGAAG
AGGGACGCCGGGAGTGACAGTACGTTGCCGCGATCCGCCGCACGCTGAGG
GTGGGTGGAGTGTGGATCAACTGCGGCCCCCTGCACTGGCACAACAAGGC
AGCCCTCGCGCTTAGCCTAGACGAGATGCTGGCCCTCGTTGCCGGGTCGG
GTTTCCACGTGGAGGCCGTAGAGCGCTTCGCGCCGAGCGCCTATAGAGTG
GAGGATGGAGAGCGGTCGCTGAAGGTGGAAGAGTTTAGGCCCGTCTTCTG
GGTCGCGATTTTAGAAGAGGGACGCCGGGAGTGA
back to top