mRNA_H-elongata_contig166909.4188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166909.4188.1
Unique NamemRNA_H-elongata_contig166909.4188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 75.9 bits (185), Expect = 2.010e-14
Identity = 30/67 (44.78%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFE 225
            + ++EDN+  I +++NR +S+R +H+DIKHH +R+ ++ GV+ + YV + EQ+ADILTK +D ++FE
Sbjct:  268 VMLFEDNQSCIHLARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.450e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKHARFL 243
            I ++EDNE AI +++N  SS R++H+D++HH +R+  E GV+ V +V S EQHADILTK++    FE H  F+
Sbjct:  308 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKHARFL 243
            I + EDNE+AI +++N  SS R++H+D++HH +R+  E GV+ V +V S EQHADILTK++    FE H  F+
Sbjct:  252 IDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A8D8LBR2_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LBR2_9HEMI)

HSP 1 Score: 73.9 bits (180), Expect = 2.820e-14
Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    7 LLIDVAIKI-----YEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKHARFL 243
            +L+D++I+I     YEDN+ AI M+KNR + +RT+HVDIK+H +RD +E G V + YV + +Q AD+ TKS+    F+K  + L
Sbjct:  136 ILLDLSIEIDHVPLYEDNQSAIHMAKNRENGKRTKHVDIKYHFIRDEVEKGNVILKYVPTDKQVADMFTKSLSYPVFQKFLKDL 219          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6G0W5M3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5M3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.370e-14
Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MTLLIDVAIKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKH 231
            + L+I + I +YEDN+  IKM++N    +RT+H+D++HH +RD ++  ++ + Y ++    ADILTK++    FE+H
Sbjct:   18 LQLVIKLPINVYEDNQSTIKMAENPTLQQRTKHIDVRHHFIRDLVKQRIIKINYYQTNSMLADILTKALPKPKFEEH 94          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 70.5 bits (171), Expect = 3.590e-14
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   10 LIDVAIKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEK 228
            ++  A+ +Y DN  AI +SKN     RT+H+DI+HH +RD +E GVV + ++ + EQ ADI TK++D   FEK
Sbjct:    4 VVQDAMALYCDNLSAINISKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEK 76          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.710e-14
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKHARF 240
            I + EDNE AI +++N  SS R++H+D++HH +R+  E GV+ V +V S EQHADILTK++    FE H  F
Sbjct:  181 IDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDF 252          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.740e-14
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKH 231
            I ++EDNE AI +++N  SS R++H+D++HH +R+  E GV+ V +V S EQHADILTK++    FE H
Sbjct:  475 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVH 543          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.840e-14
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKH 231
            I ++EDNE AI +++N  SS R++H+D++HH +R+  E GV+ V +V S EQHADILTK++    FE H
Sbjct: 1203 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVH 1271          
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.500e-14
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   25 IKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVVHVGYVRSGEQHADILTKSVDVKTFEKHARFL 243
            I ++EDNE AI +++N  SS R++H+D++HH +R+  E GV+ V +V S  QHADILTK++    FE H  F+
Sbjct:  213 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKALPRNLFEVHRDFV 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166909.4188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9YPH4_LYGHE2.010e-1444.78Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A6H5JRE7_9PHAE2.450e-1447.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBM6_9PHAE2.500e-1447.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8LBR2_9HEMI2.820e-1445.24Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A6G0W5M3_9STRA3.370e-1437.66Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2K3K827_TRIPR3.590e-1445.21Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
A0A6H5KCG6_9PHAE4.710e-1448.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE7.740e-1449.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE7.840e-1449.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTP8_9PHAE9.500e-1446.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166909contigH-elongata_contig166909:74..316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.0
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog7029.ACYPI35092-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38VJ1@33154,3CB3U@33208,3DT1J@33213,3EE1Z@33342,3SW1M@50557,4294G@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.3750072-CDS-H-elongata_contig166909:73..3161622929975.3750072-CDS-H-elongata_contig166909:73..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166909 74..316 -
1691679231.0811508-CDS-H-elongata_contig166909:73..3161691679231.0811508-CDS-H-elongata_contig166909:73..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166909 74..316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166909.4188.1prot_H-elongata_contig166909.4188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166909 74..316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166909.4188.1

>prot_H-elongata_contig166909.4188.1 ID=prot_H-elongata_contig166909.4188.1|Name=mRNA_H-elongata_contig166909.4188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MTLLIDVAIKIYEDNEDAIKMSKNRFSSRRTRHVDIKHHIVRDAIEGGVV
HVGYVRSGEQHADILTKSVDVKTFEKHARFL
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mRNA from alignment at H-elongata_contig166909:74..316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166909.4188.1 ID=mRNA_H-elongata_contig166909.4188.1|Name=mRNA_H-elongata_contig166909.4188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig166909:74..316- (Himanthalia elongata Himel1 dioecious)
ATGACCCTCCTAATCGACGTTGCCATCAAGATATACGAGGACAACGAAGA CGCAATCAAGATGTCGAAAAACCGTTTCAGCAGTCGACGAACGAGGCACG TGGACATCAAGCATCACATTGTTCGCGACGCGATCGAGGGGGGGGTGGTT CACGTAGGATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCACGAA GTCGGTAGACGTCAAGACTTTTGAGAAGCACGCGAGATTCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig166909:74..316-

>mRNA_H-elongata_contig166909.4188.1 ID=mRNA_H-elongata_contig166909.4188.1|Name=mRNA_H-elongata_contig166909.4188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig166909:74..316- (Himanthalia elongata Himel1 dioecious)
ATGACCCTCCTAATCGACGTTGCCATCAAGATATACGAGGACAACGAAGA
CGCAATCAAGATGTCGAAAAACCGTTTCAGCAGTCGACGAACGAGGCACG
TGGACATCAAGCATCACATTGTTCGCGACGCGATCGAGGGGGGGGTGGTT
CACGTAGGATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCACGAA
GTCGGTAGACGTCAAGACTTTTGAGAAGCACGCGAGATTCCTTATGACCC
TCCTAATCGACGTTGCCATCAAGATATACGAGGACAACGAAGACGCAATC
AAGATGTCGAAAAACCGTTTCAGCAGTCGACGAACGAGGCACGTGGACAT
CAAGCATCACATTGTTCGCGACGCGATCGAGGGGGGGGTGGTTCACGTAG
GATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCACGAAGTCGGTA
GACGTCAAGACTTTTGAGAAGCACGCGAGATTCCTT
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