mRNA_H-elongata_contig166907.4187.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A6H5KRN7_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRN7_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.300e-22 Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 49 VERQQNVSWKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGRL 228
VE + ++W+ WVDL HRV ASARLFCCPWAGGNS F+ W L GVEV+PLLLPGRL
Sbjct: 98 VEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLMFERWSEELPGVEVVPLLLPGRL 157
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A7S3UXQ5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXQ5_HETAK) HSP 1 Score: 58.2 bits (139), Expect = 4.200e-8 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 52 ERQQNVS-WKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGRL 228
E+QQ+ S WK+W +A RLFC PWAGGNS+++ W E++ + LPGR+
Sbjct: 62 EKQQDFSNWKKWFICRCERPDAKLRLFCLPWAGGNSTSYARWHEAFPDYEIVSVELPGRM 121
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: UPI0018930B93 (thioesterase II family protein n=1 Tax=Methylobacter sp. BlB1 TaxID=2785914 RepID=UPI0018930B93) HSP 1 Score: 57.0 bits (136), Expect = 9.190e-8 Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 1
Query: 82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHG-VEVIPLLLPGR 225
W +R S A RLFC P+AGGNSS F AWP VEV P+ LPGR
Sbjct: 11 WFPSANRKSTAKIRLFCFPYAGGNSSLFSAWPEYFSDLVEVCPVNLPGR 59
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: UPI00200D6783 (alpha/beta fold hydrolase n=1 Tax=Sphaerisporangium sp. NEAU-ZS1 TaxID=2935860 RepID=UPI00200D6783) HSP 1 Score: 53.1 bits (126), Expect = 1.980e-6 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 76 KRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
+RW+ + A RL+C P+AGG + FD+W L GVEV P++LPGR
Sbjct: 6 QRWISWRQQNPAAPVRLYCLPYAGGGTRMFDSWADALGPGVEVCPVVLPGR 56
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A117NX39_9ACTN (PKS_TE domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A117NX39_9ACTN) HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6 Identity = 25/50 (50.00%), Postives = 30/50 (60.00%), Query Frame = 1
Query: 79 RWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
RW +A+ RLFC P+AGG SS F W L G+EV P+LLPGR
Sbjct: 15 RWTVARPARPDAAVRLFCFPYAGGGSSIFRNWHTHLDDGIEVCPVLLPGR 64
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A7W5YTR3_9ACTN (Surfactin synthase thioesterase subunit n=2 Tax=Streptosporangiaceae TaxID=2004 RepID=A0A7W5YTR3_9ACTN) HSP 1 Score: 52.4 bits (124), Expect = 3.700e-6 Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 1
Query: 70 SWKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
S RW + A +LFC PWAG + AF W A G+EV+P++LPGR
Sbjct: 7 SLDRWFSVPQPRPAAPMQLFCLPWAGAGAGAFQGWAAAAGPGLEVLPMVLPGR 59
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A349L609_9BURK (Putative thioesterase n=1 Tax=Janthinobacterium sp. TaxID=1871054 RepID=A0A349L609_9BURK) HSP 1 Score: 51.6 bits (122), Expect = 7.600e-6 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 109 NASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGR 225
NA RLF P+AGG SS + WPARL GVE++ + LPGR
Sbjct: 15 NAPYRLFTFPFAGGGSSIYRQWPARLPGVELMAVNLPGR 53
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A3S1BUA3_9CYAN (Thioesterase domain-containing protein n=1 Tax=Calothrix desertica PCC 7102 TaxID=232991 RepID=A0A3S1BUA3_9CYAN) HSP 1 Score: 50.8 bits (120), Expect = 1.430e-5 Identity = 25/53 (47.17%), Postives = 30/53 (56.60%), Query Frame = 1
Query: 82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARL-----HGVEVIPLLLPGR 225
WV R AS RLFC P+AGGN+ +F W L + VEV P+ LPGR
Sbjct: 10 WVTFPKRNYEASLRLFCFPYAGGNAMSFRGWEKTLEKNLFNTVEVCPIELPGR 62
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A127QBY3_9BURK (Alpha/beta hydrolase family protein n=1 Tax=Collimonas pratensis TaxID=279113 RepID=A0A127QBY3_9BURK) HSP 1 Score: 50.8 bits (120), Expect = 1.490e-5 Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1
Query: 82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGR 225
W + A RLF P+AGG S+ + WPARL GVEV+ + LPGR
Sbjct: 8 WFSNFSKNIGAPYRLFTFPFAGGGSAIYRQWPARLPGVEVMAVCLPGR 55
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A101P3U1_9ACTN (Thioesterase n=1 Tax=Streptomyces canus TaxID=58343 RepID=A0A101P3U1_9ACTN) HSP 1 Score: 49.7 bits (117), Expect = 4.020e-5 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1
Query: 103 VSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
V + RL C P+AGG S + W ARL GV+V+P+LLPGR
Sbjct: 24 VDSVPLRLICFPYAGGTPSVYRGWGARLGAGVQVVPVLLPGR 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig166907.4187.1 >prot_H-elongata_contig166907.4187.1 ID=prot_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MRTVSHRLSPLRSTQIVERQQNVSWKRWVDLTHRVSNASARLFCCPWAGGback to top mRNA from alignment at H-elongata_contig166907:558..791- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig166907.4187.1 ID=mRNA_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig166907:558..791- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig166907:558..791- >mRNA_H-elongata_contig166907.4187.1 ID=mRNA_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig166907:558..791- (Himanthalia elongata Himel1 dioecious)back to top |