prot_H-elongata_contig166761.4182.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig166761.4182.1
Unique Nameprot_H-elongata_contig166761.4182.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S3ACN8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ACN8_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 6.010e-38
Identity = 59/69 (85.51%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 69
            QE++R++GLSATLPNYEDVATFL+V+P+KGLFYFDNS+RPVPLQQQYIG+TEKKAIKRFQLMNEI YEK
Sbjct:   12 QEMIRVIGLSATLPNYEDVATFLRVSPDKGLFYFDNSFRPVPLQQQYIGITEKKAIKRFQLMNEIVYEK 80          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.100e-37
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            QE+VRIVGLSATLPNYEDVATFL VNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV
Sbjct:  690 QEMVRIVGLSATLPNYEDVATFLNVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 759          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 139 bits (349), Expect = 1.800e-36
Identity = 64/70 (91.43%), Postives = 70/70 (100.00%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            QE+VRIVGLSATLPNYEDVATFL+VNP+KGLF+FDNSYRPVPLQQQYIG+TE+KAIKRFQLMNEICYEKV
Sbjct:  237 QEMVRIVGLSATLPNYEDVATFLRVNPDKGLFFFDNSYRPVPLQQQYIGITERKAIKRFQLMNEICYEKV 306          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.800e-36
Identity = 64/70 (91.43%), Postives = 70/70 (100.00%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            QE+VRIVGLSATLPNYEDVATFL+VNP+KGLF+FDNSYRPVPLQQQYIG+TE+KAIKRFQLMNEICYEKV
Sbjct:  676 QEMVRIVGLSATLPNYEDVATFLRVNPDKGLFFFDNSYRPVPLQQQYIGITERKAIKRFQLMNEICYEKV 745          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S0HVE9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVE9_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 1.010e-35
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 69
            QE++R+VGLSATLPNYEDVATFL+V P+KGL+YFDNSYRPVPLQQQYIG+TEKKA KRFQLMNEI Y+K
Sbjct:   93 QEMIRVVGLSATLPNYEDVATFLRVKPDKGLYYFDNSYRPVPLQQQYIGITEKKATKRFQLMNEIVYDK 161          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A3R6YI29_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YI29_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.000e-35
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            Q++VR+VGLSATLPNYEDVA FL+VNPEKGLFYFD+SYRPVPLQQQYIG+ EKKA+KR Q+MNEICYEKV
Sbjct:  205 QQMVRLVGLSATLPNYEDVAAFLRVNPEKGLFYFDSSYRPVPLQQQYIGIMEKKAMKRHQMMNEICYEKV 274          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A6A5AAG8_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAG8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.330e-35
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            Q++VR+VGLSATLPNYEDVA FL+VNPEKGLFYFD+SYRPVPLQQQYIG+ EKKA+KR Q+MNEICYEKV
Sbjct:  158 QQMVRLVGLSATLPNYEDVAAFLRVNPEKGLFYFDSSYRPVPLQQQYIGIMEKKAMKRHQMMNEICYEKV 227          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S4F5U3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F5U3_CHRCT)

HSP 1 Score: 134 bits (337), Expect = 7.490e-35
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 69
            QE++R+VGLSATLPN+EDVATFL+VNP+KGLFYFDNSYRPVPLQQQYIG+TEKKAIKRFQLMNEI YEK
Sbjct:  659 QEMIRVVGLSATLPNFEDVATFLRVNPDKGLFYFDNSYRPVPLQQQYIGITEKKAIKRFQLMNEIAYEK 727          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S4DAU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU8_HETAK)

HSP 1 Score: 133 bits (335), Expect = 1.390e-34
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            QE+VR+VGLSATLPNYEDVA FL+V P+KGLFYFDNS+RPVPLQQQYIG+TEKKA+KRFQLMNEICYEKV
Sbjct:    1 QEMVRLVGLSATLPNYEDVAHFLRVKPDKGLFYFDNSFRPVPLQQQYIGITEKKALKRFQLMNEICYEKV 70          
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: UPI0006B7680F (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Pseudopodoces humilis TaxID=181119 RepID=UPI0006B7680F)

HSP 1 Score: 125 bits (313), Expect = 2.320e-34
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 0
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 70
            QE VR+VGLSATLPNYEDVATFL+V+P KGLFYFDNS+RPVPL+Q Y+G+TEKKAIKRFQ+MNEI YEK+
Sbjct:  132 QEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ACN8_9EUKA6.010e-3885.51Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
D8LHW4_ECTSI1.100e-3797.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YVZ6_NANGC1.800e-3691.43Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA1.800e-3691.43U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
A0A7S0HVE9_9EUKA1.010e-3584.06Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A3R6YI29_9STRA4.000e-3584.29Helicase ATP-binding domain-containing protein (Fr... [more]
A0A6A5AAG8_9STRA6.330e-3584.29Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S4F5U3_CHRCT7.490e-3588.41Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4DAU8_HETAK1.390e-3487.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0006B7680F2.320e-3481.43U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 40..72
e-value: 1.9E-27
score: 98.0
NoneNo IPR availableGENE3D3.40.50.300coord: 2..39
e-value: 1.9E-27
score: 98.0
NoneNo IPR availablePANTHERPTHR24075:SF5U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASEcoord: 1..71
NoneNo IPR availablePANTHERPTHR24075FAMILY NOT NAMEDcoord: 1..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166761contigH-elongata_contig166761:1003..1233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166761.4182.1mRNA_H-elongata_contig166761.4182.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig166761 1003..1233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig166761.4182.1 ID=prot_H-elongata_contig166761.4182.1|Name=mRNA_H-elongata_contig166761.4182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGV
TEKKAIKRFQLMNEICYEKVRRLELI*
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