mRNA_H-elongata_contig16656.4176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig16656.4176.1
Unique Name	mRNA_H-elongata_contig16656.4176.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.070e-30
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   15 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 98

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.180e-29
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 96

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.190e-29
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   10 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGEL 93

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BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.210e-29
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   79 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 162

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.520e-28
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:  186 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 269

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.840e-28
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 96

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.980e-28
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEE 246
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EE
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.760e-27
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:  360 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 443

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.050e-27
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:   77 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 160

[Close]

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.510e-27
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1

Query:   13 REQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRAKRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL 264
            R QLPL LCWAIT+HKSQGQT  KAV+DLG  EA  GLTF+CLSRAKRLVDL+VEPM FD +  LG   +++ RL+EEVRL  L
Sbjct:  356 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGEL 439

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16656.4176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSF1_9PHAE	2.070e-30	67.86	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	1.180e-29	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K214_9PHAE	1.190e-29	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	1.210e-29	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUS2_9PHAE	1.520e-28	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	1.840e-28	67.86	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KFN2_9PHAE	4.980e-28	67.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	1.760e-27	67.86	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	2.050e-27	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J8Y8_9PHAE	3.510e-27	67.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16656	contig	H-elongata_contig16656:511..774 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	75.9
Seed ortholog evalue	1.1e-11
Seed eggNOG ortholog	400682.PAC_15726636
EggNOG free text desc.	G-quadruplex DNA unwinding
EggNOG OGs	3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.	L
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	signal peptide
Exons	1
Model size	264
Cds size	264
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929974.5203838-CDS-H-elongata_contig16656:510..774	1622929974.5203838-CDS-H-elongata_contig16656:510..774	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16656 511..774 -
1691679230.723396-CDS-H-elongata_contig16656:510..774	1691679230.723396-CDS-H-elongata_contig16656:510..774	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16656 511..774 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16656.4176.1	prot_H-elongata_contig16656.4176.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig16656 511..774 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig16656:511..774-
coding sequence from alignment at H-elongata_contig16656:511..774-

protein sequence of mRNA_H-elongata_contig16656.4176.1

>prot_H-elongata_contig16656.4176.1 ID=prot_H-elongata_contig16656.4176.1|Name=mRNA_H-elongata_contig16656.4176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
KQASREQLPLTLCWAITLHKSQGQTSDKAVVDLGKSEATAGLTFICLSRA
KRLVDLVVEPMCFDILFKLGEVISLRPRLEEEVRLKTL

mRNA from alignment at H-elongata_contig16656:511..774-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig16656.4176.1 ID=mRNA_H-elongata_contig16656.4176.1|Name=mRNA_H-elongata_contig16656.4176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig16656:511..774- (Himanthalia elongata Himel1 dioecious)
AAGCAGGCGTCACGAGAGCAGCTTCCTCTCACACTGTGCTGGGCGATTAC
CTTGCACAAGAGCCAGGGACAGACGTCGGACAAGGCAGTGGTCGATCTGG
GGAAGTCCGAAGCAACCGCAGGGCTGACCTTCATCTGTCTCAGCCGGGCC
AAGCGACTGGTAGACCTCGTAGTGGAGCCTATGTGTTTCGACATACTTTT
TAAGCTAGGGGAAGTCATATCTTTGAGGCCTAGACTTGAAGAGGAAGTGC
GCCTCAAAACGCTG

Coding sequence (CDS) from alignment at H-elongata_contig16656:511..774-

>mRNA_H-elongata_contig16656.4176.1 ID=mRNA_H-elongata_contig16656.4176.1|Name=mRNA_H-elongata_contig16656.4176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig16656:511..774- (Himanthalia elongata Himel1 dioecious)
AAGCAGGCGTCACGAGAGCAGCTTCCTCTCACACTGTGCTGGGCGATTAC
CTTGCACAAGAGCCAGGGACAGACGTCGGACAAGGCAGTGGTCGATCTGG
GGAAGTCCGAAGCAACCGCAGGGCTGACCTTCATCTGTCTCAGCCGGGCC
AAGCGACTGGTAGACCTCGTAGTGGAGCCTATGTGTTTCGACATACTTTT
TAAGCTAGGGGAAGTCATATCTTTGAGGCCTAGACTTGAAGAGGAAGTGC
GCCTCAAAACGCTGAAGCAGGCGTCACGAGAGCAGCTTCCTCTCACACTG
TGCTGGGCGATTACCTTGCACAAGAGCCAGGGACAGACGTCGGACAAGGC
AGTGGTCGATCTGGGGAAGTCCGAAGCAACCGCAGGGCTGACCTTCATCT
GTCTCAGCCGGGCCAAGCGACTGGTAGACCTCGTAGTGGAGCCTATGTGT
TTCGACATACTTTTTAAGCTAGGGGAAGTCATATCTTTGAGGCCTAGACT
TGAAGAGGAAGTGCGCCTCAAAACGCTG