prot_H-elongata_contig16643.4172.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 358 bits (918), Expect = 6.250e-109 Identity = 201/324 (62.04%), Postives = 227/324 (70.06%), Query Frame = 0
Query: 271 FRPPWRGGGRMAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSP------------VSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARK------VRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGELESVIGNQV 576
FRP WRGG R+APPNEGKKEVP G E+CL GK FVVSGVLDSLGREAA DLIKQYGGKVTG+VSSRT +L+LG+VLDDGRPPEEGSKYK+A +KT++I+EDGLFKM+RDSNPKG Q P P ++NPY + AV NPY+ + A + G A G +GTS R +A PGQMWVDKYKP +SS V+G+ GQVKKLK WL+ WE WHL GAK P GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHV ELNASDTR+K SLS EL SVIGN+V
Sbjct: 229 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNPKGQQPPGXXXXXXXXXXXAPASKPAVANPY-QPKKAVVNPYAS-MQAAAKKKAAVNPFGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHL--KGAKAPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKV 548
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4D1N3_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D1N3_9CHLO) HSP 1 Score: 185 bits (470), Expect = 1.550e-46 Identity = 130/315 (41.27%), Postives = 169/315 (53.65%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGG-QSPVSGKPP--------PISNPYAKATAAVTNPYSI--PKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
PPN +KEVP G +CL G+ FV++GVLDSL R A DLIK++GGKVT +VS +T++LL G GR SKY+ A+Q KTKVI+EDGLF ++R S P + P + P P SN + AA S+ P+ P A S+VGG+ Q+WVDKYKP S E++GN V LK WLECWE+ HL GA +G KD +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS ++G+ +V+ V
Sbjct: 132 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGHNC--GR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQPEGPTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVRKPEGPVAPYNAGVRSQLPITGASSVGGSLN--------------------------QLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVVKEMV 412
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A2K3D450_CHLRE (Replication factor C subunit 1 n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D450_CHLRE) HSP 1 Score: 186 bits (471), Expect = 2.630e-46 Identity = 138/292 (47.26%), Postives = 174/292 (59.59%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGS-KKSGTSSAEARKVRRSAKPSDAPGQ--MWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHL-GGAGAKPPQGKDNP---GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
PPN+G KE P G +CL GK FV+SGVLDSLGRE A D IK++GG+VTG+VS +T++L++G GR SKY+KA++ TKVI+EDGLF +IR S P+ A A P S P XXXXXXXXXXXXX G+ +G SSA V R + GQ +WVDKYKPR S+E++GN V LK+WL WE+ HL GGA G P +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+ + E
Sbjct: 375 PPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGHHT--GR-----SKYRKAREHGTKVIDEDGLFSLIR-----------------ASEPFIPAENAAAPPASAPXXXXXXXXXXXXXXXXXXXXXXXAAQRPGAGAAAGPSSARPAGVTRQPAAAGDAGQYQLWVDKYKPRNSAELVGNNTLVDNLKSWLMNWEQVHLRGGAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKAGKTSE 642
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4GSG1_9CHLO (BRCT domain-containing protein n=5 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GSG1_9CHLO) HSP 1 Score: 185 bits (470), Expect = 3.430e-46 Identity = 130/315 (41.27%), Postives = 169/315 (53.65%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGG-QSPVSGKPP--------PISNPYAKATAAVTNPYSI--PKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
PPN +KEVP G +CL G+ FV++GVLDSL R A DLIK++GGKVT +VS +T++LL G GR SKY+ A+Q KTKVI+EDGLF ++R S P + P + P P SN + AA S+ P+ P A S+VGG+ Q+WVDKYKP S E++GN V LK WLECWE+ HL GA +G KD +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS ++G+ +V+ V
Sbjct: 345 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGHNC--GR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQPEGPTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVRKPEGPVAPYNAGVRSQLPITGASSVGGSLN--------------------------QLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVVKEMV 625
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4ARP4_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARP4_9CHLO) HSP 1 Score: 185 bits (469), Expect = 4.500e-46 Identity = 133/312 (42.63%), Postives = 168/312 (53.85%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKP----SDAPG----QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
PPN KKE P G +CL G+ FV++GVLDSL R A DLIK++GGKVT +VS +T++LL+G GR SKY+ A+ KTKV++EDGLF ++R S P P P A T P SIP +A GA G +K G A RS P S G Q+WVDKYKP S E++GN V LK W+ECWE+ H GA A +G KD +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS ++G+ +VI V
Sbjct: 316 PPNYRKKEAPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLVGHNC--GR-----SKYRMAKHHKTKVLDEDGLFALLRASAPFA----------PPERPMATPTPGTAAPTSIPAS------------NFFGSTAAAAGAGTGGRKPGDPVALNDAGVRSQPPITGASSGGGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWIECWEQVHQRGAAAPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVIKEMV 597
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A835T5C5_CHLIN (Replication factor C subunit 1 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5C5_CHLIN) HSP 1 Score: 184 bits (467), Expect = 8.670e-46 Identity = 137/296 (46.28%), Postives = 176/296 (59.46%), Query Frame = 0
Query: 281 MAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQ----MWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
+ PPN+G KE P G +CL GK FV+SGVLDSLGRE A D IK++GG+ T +VS +TT+LL G GR SKY+KA++ TKVI+EDGLF +IR S P P A AA P + PA +XXXXXXXXXXXXX + +G + AR + +P+ A Q +WVDKYKPR S E++GN V LK+WL WE+ +L GA A +G KD +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+ + E
Sbjct: 374 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRTTQAVSGKTTFLLAGHHC--GR-----SKYRKAREHSTKVIDEDGLFALIRASEP--------------FIPGGAAAAAPPAPAAXXXXAPASQXXXXXXXXXXXXXXXXXXXAAAQRAAGAGPSSARPAGVARQPAAAGDQSQYQLWVDKYKPRNSVELVGNNTLVANLKSWLMSWEQVNLRGAAAPTAKGGGAKPKDL-SKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKAGKTSE 647
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A836BBT5_9CHLO (Replication factor C subunit 1 n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBT5_9CHLO) HSP 1 Score: 184 bits (466), Expect = 1.160e-45 Identity = 140/293 (47.78%), Postives = 177/293 (60.41%), Query Frame = 0
Query: 281 MAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRS-AKPSDAPG-QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNP----GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
+ PPN+G KE P G +CL GK FV+SGVLDSLGR+ A D IK++GG+ T +VS +TT+LL+G GR SK++KA++L TKVI+EDGL +IR S P P PP ATAA PA +XXXXXXXXXXXXX +G SSA V R+ A DA Q+WVDKYKPR S E++GN V L+AWL WE+ HL GA A +G + +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+ + E
Sbjct: 365 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGRDEATDYIKRHGGRTTQAVSGKTTFLLVGHHC--GR-----SKFRKARELGTKVIDEDGLIALIRASEPN---IPAGAAAPP-------ATAA-----------PASQXXXXXXXXXXXXXXXXXXXXXXXAGAGPSSARPAGVARAPAAAGDASQYQLWVDKYKPRNSVELVGNNTLVDNLRAWLLNWEQVHLRGAAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIIAREAGFEVVEMNASDTRNKAGKTSE 629
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: D8UHI8_VOLCA (Replication factor C subunit 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHI8_VOLCA) HSP 1 Score: 178 bits (451), Expect = 7.730e-44 Identity = 125/311 (40.19%), Postives = 167/311 (53.70%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPG--------QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNP----GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
PPN KKEVP G +CL G+ FV++G+LDSL R A DLIK++GGKVT SVS +T ++++G G KY+ A+Q KTK+I+EDGLF +++ S P P A A AA P SI + GGA + + T + +PS P Q+WVDKYKPR SSE++GN V LK WLE WE+ HL GA A +G + +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNKS+ ++G+ +VI V
Sbjct: 203 PPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRG-------KYRDAKQHKTKLIDEDGLFALLK----------ASASFAPAERPAAAAAAAAI-PSSI---------CTSNFGPTAAARAGPGGAGPSAVRKPTGPYT------TPQPSQPPAXXXXXGLYQLWVDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIIAREAGFEVVEMNASDTRNKSTKVSDGIAGKQSNVIKEMV 480
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A0D2TH74_GOSRA (Replication factor C subunit 1 n=18 Tax=Gossypium TaxID=3633 RepID=A0A0D2TH74_GOSRA) HSP 1 Score: 174 bits (441), Expect = 1.090e-42 Identity = 116/286 (40.56%), Postives = 161/286 (56.29%), Query Frame = 0
Query: 278 GGRMAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLG-GAGAKPPQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKS 562
G R PP++G+KEVP GA +CL G FV+SG LDSL RE A DLIK+YGG+VTGSVS +T YLL + G K KA++L TK + EDGLF MIR SN G++P+ G+ SN +AVT S+PKK P +K S + A+K + + S P W +KY+P+ +E+ GN VK+L WL W + LG G+ K + D+ +A LLSG PG+GK+++A LV++ +G+ E+NASD+R K+
Sbjct: 219 GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSVSKKTNYLLCDEDIG-------GRKSSKAKELGTKFLTEDGLFDMIRASN--HGKAPLKGQ----SN-----KSAVTVAPSLPKKSPQQTEVKATL----------------TKSPSPSVSSAKKRGQPVQHSSLP---WTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKA 467
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A150GSV0_GONPE (Replication factor C subunit 1 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSV0_GONPE) HSP 1 Score: 172 bits (437), Expect = 6.390e-42 Identity = 125/306 (40.85%), Postives = 162/306 (52.94%), Query Frame = 0
Query: 283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAP-GQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNPGA------RAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
PPN G K+VP G +CL G+ FV+SGVLDSL R A LI+++GGKVT SVS RT +LL+G GR SKY+ A+Q TK+I+EDGLF +IR S P + +PPP + P + S P A R S ++ + +A S Q+WVDKYKP+ S E++GN V LK WLE WE HL GA PP K +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNKS ++G+ +VI V
Sbjct: 360 PPNYGNKDVPRGHPDCLTGRTFVMSGVLDSLMRSDADALIRRHGGKVTQSVSGRTAFLLVGHNC--GR-----SKYRGAKQHGTKIIDEDGLFALIRASEPFAPKD----QPPPAAAPASXXXXXXQ--XSQPSSQAASRAGPAAISATGFFGSGAXXXXXXXPSGSRAAPPPASLGGAAGGSGGQLNQLWVDKYKPKNSVELVGNNTLVANLKQWLESWEGVHL--RGAAPPTAKGGGSKPKDLTKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKSGKVSDGIAGKQSNVIKEMV 650 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig16643.4172.1 ID=prot_H-elongata_contig16643.4172.1|Name=mRNA_H-elongata_contig16643.4172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=576bpback to top |