mRNA_H-elongata_contig16636.4170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16636.4170.1
Unique NamemRNA_H-elongata_contig16636.4170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A835ZFY6_9STRA (Electron transfer flavoprotein subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY6_9STRA)

HSP 1 Score: 355 bits (910), Expect = 8.470e-120
Identity = 189/267 (70.79%), Postives = 218/267 (81.65%), Query Frame = 1
Query:    4 AAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            A+KV GV+KVLH D PA+  ++AEN +R V A   A  YTH+MA+S+MAGKNFIGRLG+E   +PVTDVI+V++E TF RPMYAGNA+ATV A  PLK+LTVRPTAF+K+   GG+A +E+A L     + GL  F+SESV    RPDL  ARVVVSGGRGMK+G++F MLE LADKLGGAVGASRAAVDAG+V NELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIF  AD+GLV DLF AVPEL  K+
Sbjct:   76 ASKVAGVAKVLHGDHPAYAHFLAENTSRGVRASAEAHKYTHVMAISSMAGKNFIGRLGAEMDLAPVTDVIKVVDESTFERPMYAGNAIATVTASDPLKLLTVRPTAFDKAPATGGSAAVEAAPLPAE-PETGLSKFVSESVSSSARPDLGAARVVVSGGRGMKNGENFAMLEALADKLGGAVGASRAAVDAGYVPNELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFTVADYGLVADLFTAVPELTKKL 341          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A4D9DEZ9_9STRA (Electron transfer flavoprotein subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEZ9_9STRA)

HSP 1 Score: 315 bits (806), Expect = 5.610e-104
Identity = 172/268 (64.18%), Postives = 208/268 (77.61%), Query Frame = 1
Query:    1 QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            QAA+V GVSKVL A+  A+ K +AEN+++AV A   AG Y+HI+A S+M  KN++ R+ +     P+TDVI + ++ TFVRPMYAGNA+ATV    PLK+LTVR TAFEK+ + GG+A  E A  V    +AGL +FLSESV    RP+L+ ARVV+SGGRG+K  +HF+MLE LADKL GAVGASRAAVD   + NELQVGQTGKVVAP+LY+AVGISGAIQHLSGMKDSK IVAINKDKEAPIFQ AD+GLV DLF AVPEL  K+
Sbjct:   78 QAAQVPGVSKVLVAEHAAYEKGIAENLSQAVVATHKAGDYSHILAPSSMHSKNYVPRVAALLDSQPITDVIAIKDQATFVRPMYAGNAIATVTTSEPLKILTVRTTAFEKAPSTGGSAATEVAPAVAK-PEAGLSAFLSESVSQSARPELSSARVVISGGRGLKTKEHFQMLEALADKLKGAVGASRAAVDEFHMPNELQVGQTGKVVAPDLYLAVGISGAIQHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFKAVPELTDKV 344          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A067CIA0_SAPPC (Electron transfer flavoprotein subunit alpha n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CIA0_SAPPC)

HSP 1 Score: 311 bits (798), Expect = 5.420e-103
Identity = 169/268 (63.06%), Postives = 202/268 (75.37%), Query Frame = 1
Query:    1 QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            +AA V GV  VLHAD   +   +AE +T  VAAVQ A S++HI+A S+   KNF+ RLG+    +P+TDV+ V++E TF RPMYAGNA+ATV +   +K++T+RPT FEK+A  GG+A + +A      A A L  F+SE     +RPDL  ARVVVSGGRGMK G++FEML  LADKL GAVGASRAAVDAGFV NELQVGQTGKVVAPELYIAVGISGAIQHL+GMKDSK IVAINKD EAPIFQ +D+G+V DLF  VPEL  KI
Sbjct:   64 EAAAVQGVKAVLHADSAQYDHAIAEEVTNLVAAVQAASSFSHILAPSSNISKNFVPRLGATLDVAPLTDVLAVVDETTFQRPMYAGNAIATVTSSDAVKLMTIRPTGFEKAAATGGSASVSAAPTA---APANLTKFVSEETSSSDRPDLASARVVVSGGRGMKSGENFEMLNTLADKLKGAVGASRAAVDAGFVPNELQVGQTGKVVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDAEAPIFQVSDYGVVDDLFKVVPELTEKI 328          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A5D6Y5S8_9STRA (Electron transfer flavoprotein subunit alpha n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5S8_9STRA)

HSP 1 Score: 311 bits (797), Expect = 8.770e-103
Identity = 166/268 (61.94%), Postives = 204/268 (76.12%), Query Frame = 1
Query:    1 QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            QAAK+ GVS VLHA D  +   +AE +T  + A Q A  YTHI+A S+ A KN+I R+G++   +P++DV+ V +++TF RPMYAGNA+A V +   +K+LTVRPT FEK+A  GG+A +  A         G  +F+SE V    RPDLT ARVV++GGRG+K G +FE+L +LADKLGGAVGASRAAVDAG+V NELQVGQTGKVVAPELY+AVGISGAIQHL+GMKDSK IVAINKD+EAPIFQ AD+GLV DLF AVPEL  KI
Sbjct:   68 QAAKIAGVSSVLHAADAKYDHLIAEEVTELLVAAQQANQYTHIVAPSSNASKNYIPRVGAKLDVAPISDVLAVADKDTFFRPMYAGNAIAKVTSSDAVKLLTVRPTGFEKAAAEGGSAAVSPA---PEAPTVGKTAFVSEEVSKSERPDLTSARVVIAGGRGLKSGDNFELLYKLADKLGGAVGASRAAVDAGYVPNELQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKTIVAINKDEEAPIFQVADYGLVADLFTAVPELTEKI 332          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A2D4CIU3_PYTIN (Electron transfer flavoprotein subunit alpha n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIU3_PYTIN)

HSP 1 Score: 310 bits (794), Expect = 2.120e-102
Identity = 163/267 (61.05%), Postives = 205/267 (76.78%), Query Frame = 1
Query:    4 AAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            AAK+ GVS VLHA D  +   +AE++T  + A Q   S++HI+A S+ A KN++ RLG++   +P++D+I V +++TF+RP YAGNA+A V++   +K++TVRPT FEK+A  GG A +   A     A  G   F+SE V    RPDLT ARVV+SGGRG+K G++F+ML +LADKLGGAVGASRAAVDAGFV NELQVGQTGKVVAPELY+AVGISGAIQHL+GMKDSK IVAINKD+EAPIFQ +D+GLV DLF AVPEL  KI
Sbjct:   64 AAKIAGVSNVLHAKDAKYDHLLAEDVTELLVATQKEKSFSHILAPSSNASKNYLPRLGAKLDTAPISDIIAVADKDTFLRPTYAGNAIAQVKSKDAVKIITVRPTGFEKAAAEGGNAAV---AAAPEAAATGKSQFVSEEVSKSERPDLTAARVVISGGRGLKSGENFDMLYKLADKLGGAVGASRAAVDAGFVPNELQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKTIVAINKDEEAPIFQVSDYGLVADLFTAVPELTEKI 327          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A024GNR0_9STRA (Electron transfer flavoprotein subunit alpha n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNR0_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.430e-102
Identity = 160/267 (59.93%), Postives = 207/267 (77.53%), Query Frame = 1
Query:    4 AAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            A ++  V+KVLHA+DP +   +AEN+   + ++Q   S++HI+A ++ + KN++ RLG++   +P++D+IQV+NE TFVRP YAGNA++ V++   +K++TVRPT FEK    GG A  E  + VE   D+    F+SE +    RPDLT ARVV+SGGRG+K G++F++L +LADKLGGAVGASRAAVDAGFV NELQVGQTGKVVAPELYIAVGISGAIQHL+GMKDSK IVAINKD+EAPIFQ AD+GLVGDLF  +PEL  KI
Sbjct:   67 ACQIPSVTKVLHANDPKYDHQLAENMVELLYSLQQVHSFSHILAPTSNSSKNYLPRLGAKLDVAPISDIIQVVNENTFVRPTYAGNAISKVQSVDAVKLITVRPTGFEKMGTEGGKAAAEQVSTVEF--DSSKSEFVSEQISKSERPDLTAARVVISGGRGLKSGENFDLLYKLADKLGGAVGASRAAVDAGFVPNELQVGQTGKVVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDEEAPIFQVADYGLVGDLFQLLPELTEKI 331          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A6G0XJ74_9STRA (Electron transfer flavoprotein subunit alpha n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ74_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.780e-101
Identity = 171/267 (64.04%), Postives = 198/267 (74.16%), Query Frame = 1
Query:    4 AAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            AA V GV  VLHAD       +AE IT  V  VQ A ++THI+A S+   KNF+ R+G+    SP TDV+ V++E TF RPMYAGNA+ATV +   +K+LTVRPT F+K+A  GGA  + +A        AGL  F+SE     +RPDLT ARVVVSGGRGMK G++F +L  LADKL GAVGASRAAVDAGFV NELQVGQTGKVVAPELYIAVGISGAIQHL+GMKDSK IVAINKD EAPIFQ AD+GLV DLF+AVPEL  KI
Sbjct:   65 AASVQGVKSVLHADAAQFDHSLAEEITSLVVTVQKASNFTHIVAPSSNISKNFLPRVGAALDVSPFTDVLAVVDENTFQRPMYAGNAIATVTSSDAVKLLTVRPTGFDKAATTGGAGAVSAAPAAPV---AGLSRFVSEETSSSDRPDLTSARVVVSGGRGMKSGENFALLNTLADKLKGAVGASRAAVDAGFVPNELQVGQTGKVVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDGEAPIFQVADYGLVEDLFNAVPELTEKI 328          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A6U3UTA5_9STRA (Electron transfer flavoprotein subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3UTA5_9STRA)

HSP 1 Score: 308 bits (789), Expect = 2.410e-101
Identity = 166/268 (61.94%), Postives = 205/268 (76.49%), Query Frame = 1
Query:    1 QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            QAA V GV  ++  +D      +AEN +RAV A   +  Y+H+MA S+   KN++ R+  E   +P+TDVI++L E+TFVRPMYAGN++AT+++   +K+L++R TAF+K A+ GG+A +E   L E   DAGL +F S S     RPDLT A VVVSGGRGMK G++F MLE LADKLGGAVGASRAAVDAG+V NELQVGQTGKVVAP+LYIAVGISGAIQHLSGMKDSK IVAINKD EAPIFQ AD+GLV DLF+AVPE+ SK+
Sbjct:   82 QAAAVAGVGNIITGNDAGLETGLAENFSRAVVAAAKSKGYSHVMAPSSNFTKNYLPRVAIELDSAPMTDVIEILGEDTFVRPMYAGNSLATIKSQDSVKLLSIRTTAFDKCADSGGSAEMEDLVL-EGTCDAGLSAFKSASASESERPDLTAASVVVSGGRGMKSGENFGMLEELADKLGGAVGASRAAVDAGYVPNELQVGQTGKVVAPDLYIAVGISGAIQHLSGMKDSKTIVAINKDAEAPIFQVADYGLVQDLFNAVPEISSKV 348          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: A0A8K1FT05_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FT05_PYTOL)

HSP 1 Score: 307 bits (787), Expect = 2.440e-101
Identity = 164/267 (61.42%), Postives = 205/267 (76.78%), Query Frame = 1
Query:    4 AAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            AAK+ GVS VLHA D      +AE++T  + A Q   +++HI+A S+ A KN++ RLG++   +P++D+I V +++TFVRP YAGNA+A V++   +K++TVRPT FEK+A  GG+A + +A      A AG   F+SE V    RPDL  ARVV+SGGRG+K G++FEML +LADKLGGAVGASRAAVDAGFV NELQVGQTGKVVAPELY+A GISGAIQHL+GMKDSK IVAINKD+EAPIFQ AD+GLV DLF AVPEL  KI
Sbjct:   64 AAKIAGVSNVLHAKDAKFDHLIAEDVTELLLATQKEKNFSHILAPSSNASKNYLPRLGAKLDSAPISDIIAVADKDTFVRPTYAGNAIAQVKSSDAVKLITVRPTGFEKAAVEGGSASVSAA---PEAAAAGKTQFVSEEVSKSERPDLGSARVVISGGRGLKSGENFEMLYKLADKLGGAVGASRAAVDAGFVPNELQVGQTGKVVAPELYVAAGISGAIQHLAGMKDSKTIVAINKDEEAPIFQVADYGLVADLFTAVPELTEKI 327          
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Match: K3WS82_GLOUD (Electron transfer flavoprotein subunit alpha n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS82_GLOUD)

HSP 1 Score: 306 bits (785), Expect = 5.240e-101
Identity = 161/268 (60.07%), Postives = 205/268 (76.49%), Query Frame = 1
Query:    1 QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMAGKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKVLTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDLTVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQVGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAADFGLVGDLFDAVPELESKI 804
            QAAK+ GVS VLHA D  +   +AE +T  + A Q   ++THI+A S+ A KN++ R+G++   +P++D++ V +++TF+RP YAGNA+A +++   +K++TVRPT FEK+A  GG+A +  A      A  G   F+SE V   +RPDLT ARVVVSGGRG+K G++FEML +LADKL GAVGASRAAVDAG+V NELQVGQTGKVVAPELYIA GISGAIQHL+GMKDSK IVAINKD+EAPIFQ +D+GLV DLF AVPEL  KI
Sbjct:   65 QAAKIAGVSSVLHAADAKYDHLIAEEVTELLVAAQKEKNFTHILAPSSNASKNYLPRVGAKLDVAPISDILAVADKDTFLRPTYAGNAIAQIKSKDAVKLITVRPTGFEKAATEGGSASVSPA---PEAATVGKTQFVSEEVSKSDRPDLTSARVVVSGGRGLKSGENFEMLYKLADKLNGAVGASRAAVDAGYVPNELQVGQTGKVVAPELYIAAGISGAIQHLAGMKDSKTIVAINKDEEAPIFQVSDYGLVADLFTAVPELTEKI 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16636.4170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFY6_9STRA8.470e-12070.79Electron transfer flavoprotein subunit alpha n=1 T... [more]
A0A4D9DEZ9_9STRA5.610e-10464.18Electron transfer flavoprotein subunit alpha n=2 T... [more]
A0A067CIA0_SAPPC5.420e-10363.06Electron transfer flavoprotein subunit alpha n=4 T... [more]
A0A5D6Y5S8_9STRA8.770e-10361.94Electron transfer flavoprotein subunit alpha n=1 T... [more]
A0A2D4CIU3_PYTIN2.120e-10261.05Electron transfer flavoprotein subunit alpha n=1 T... [more]
A0A024GNR0_9STRA3.430e-10259.93Electron transfer flavoprotein subunit alpha n=1 T... [more]
A0A6G0XJ74_9STRA1.780e-10164.04Electron transfer flavoprotein subunit alpha n=2 T... [more]
A0A6U3UTA5_9STRA2.410e-10161.94Electron transfer flavoprotein subunit alpha n=1 T... [more]
A0A8K1FT05_PYTOL2.440e-10161.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WS82_GLOUD5.240e-10160.07Electron transfer flavoprotein subunit alpha n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16636contigH-elongata_contig16636:5651..6991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.2
Seed ortholog evalue4.6e-82
Seed eggNOG ortholog112098.XP_008614384.1
Preferred nameETFA
KEGG koko:K03522
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
EggNOG free text desc.fatty acid beta-oxidation using acyl-CoA dehydrogenase
EggNOG OGsCOG2025@1,KOG3954@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size807
Cds size807
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16636.4170.1prot_H-elongata_contig16636.4170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16636 5651..6991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.9877782-CDS-H-elongata_contig16636:5650..58571622929973.9877782-CDS-H-elongata_contig16636:5650..5857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 5651..5857 -
1691679230.447301-CDS-H-elongata_contig16636:5650..58571691679230.447301-CDS-H-elongata_contig16636:5650..5857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 5651..5857 -
1622929974.0034547-CDS-H-elongata_contig16636:6183..66781622929974.0034547-CDS-H-elongata_contig16636:6183..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 6184..6678 -
1691679230.4641724-CDS-H-elongata_contig16636:6183..66781691679230.4641724-CDS-H-elongata_contig16636:6183..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 6184..6678 -
1622929974.0187328-CDS-H-elongata_contig16636:6886..69911622929974.0187328-CDS-H-elongata_contig16636:6886..6991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 6887..6991 -
1691679230.474008-CDS-H-elongata_contig16636:6886..69911691679230.474008-CDS-H-elongata_contig16636:6886..6991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16636 6887..6991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16636.4170.1

>prot_H-elongata_contig16636.4170.1 ID=prot_H-elongata_contig16636.4170.1|Name=mRNA_H-elongata_contig16636.4170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
QAAKVLGVSKVLHADDPAHGKWVAENITRAVAAVQTAGSYTHIMALSTMA
GKNFIGRLGSEFGCSPVTDVIQVLNEETFVRPMYAGNAVATVRAPGPLKV
LTVRPTAFEKSANIGGAAPIESAALVEHGADAGLGSFLSESVGGGNRPDL
TVARVVVSGGRGMKDGKHFEMLERLADKLGGAVGASRAAVDAGFVANELQ
VGQTGKVVAPELYIAVGISGAIQHLSGMKDSKCIVAINKDKEAPIFQAAD
FGLVGDLFDAVPELESKI*
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mRNA from alignment at H-elongata_contig16636:5651..6991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16636.4170.1 ID=mRNA_H-elongata_contig16636.4170.1|Name=mRNA_H-elongata_contig16636.4170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig16636:5651..6991- (Himanthalia elongata Himel1 dioecious)
CAGGCAGCGAAGGTGTTGGGTGTCTCCAAAGTTCTTCATGCTGACGATCC AGCTCACGGCAAGTGGGTTGCTGAAAACATCACTAGGGCCGTCGCCGCCG TTCAGGTACGGCATACGAATGAAGCGCAAAATATATTTTTTAATATCGAC ATAGAGCTTAAATATATATCAGTAAGTGTCCGCTCACTGGAGTTTGGTGT GAACATTTAACTGATTGTTAAAACTCGAAATTGGAGTATTTCACTGTCTC GACCTTGACGTAAACACTCATTTAAGCGGGGCTCTATCCTTCCGTCTCAC TTTTTTTTTGCAGACTGCCGGATCGTACACCCACATTATGGCCCTTTCCA CCATGGCGGGGAAGAATTTTATTGGCCGCTTGGGGTCGGAGTTTGGCTGT TCTCCTGTCACAGATGTGATTCAGGTGCTCAATGAAGAGACATTCGTGCG GCCTATGTACGCTGGGAATGCCGTCGCAACTGTGCGCGCTCCGGGCCCTT TGAAGGTACTGACGGTACGTCCAACGGCATTCGAGAAATCAGCAAACATC GGTGGCGCAGCTCCCATAGAGTCTGCAGCTCTTGTGGAACACGGTGCGGA CGCTGGCCTCGGTTCTTTCTTATCTGAGTCTGTGGGCGGAGGGAATCGGC CTGACCTTACGGTGGCAAGAGTAGTGGTGTCTGGCGGTCGAGGGATGAAG GACGGCAAACACTTCGAGATGCTGGAGCGACTGGCGGACAAACTTGGGGG CGCAGTAGGAGCATCAAGGGCTGCTGTTGATGCGGGATTCGTTGCGAACG AACTTCAGGTGAAGACCTGCCTTGTGGAAGTATTTCGTTCAATAGCTATG GGACGGACGTTCATGGCCGTAGTCATCATTTTTATCGAAATACTCTCAGC ACGCGGTCTGGCAAACATGATATGGCAGCAATCGGATTTCGACGCCCTAT CTTTCGAAATACCTCGTGTAGACCTATAAGCACGGATGGAAATGTAACGT CCATTTAACCTTGAAACAAGGCTAGCGGACGGGATTCGACGACGCTGTTG GACGAATAGAGTAGATATGATACACACATACTATAATATTCATTATTGAT ACTGCGCCGATTCACCCTTTTCGACGGATTACAGGTGGGACAAACCGGCA AGGTGGTGGCACCGGAGTTGTACATTGCGGTGGGAATTTCAGGCGCGATT CAACATCTATCGGGGATGAAAGACAGCAAATGCATTGTGGCCATTAACAA GGACAAGGAAGCACCGATATTCCAGGCAGCTGACTTCGGACTTGTTGGTG ACTTATTCGATGCTGTGCCAGAGCTCGAGTCCAAGATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16636:5651..6991-

>mRNA_H-elongata_contig16636.4170.1 ID=mRNA_H-elongata_contig16636.4170.1|Name=mRNA_H-elongata_contig16636.4170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig16636:5651..6991- (Himanthalia elongata Himel1 dioecious)
CAGGCAGCGAAGGTGTTGGGTGTCTCCAAAGTTCTTCATGCTGACGATCC
AGCTCACGGCAAGTGGGTTGCTGAAAACATCACTAGGGCCGTCGCCGCCG
TTCAGCAGGCAGCGAAGGTGTTGGGTGTCTCCAAAGTTCTTCATGCTGAC
GATCCAGCTCACGGCAAGTGGGTTGCTGAAAACATCACTAGGGCCGTCGC
CGCCGTTCAGACTGCCGGATCGTACACCCACATTATGGCCCTTTCCACCA
TGGCGGGGAAGAATTTTATTGGCCGCTTGGGGTCGGAGTTTGGCTGTTCT
CCTGTCACAGATGTGATTCAGGTGCTCAATGAAGAGACATTCGTGCGGCC
TATGTACGCTGGGAATGCCGTCGCAACTGTGCGCGCTCCGGGCCCTTTGA
AGGTACTGACGGTACGTCCAACGGCATTCGAGAAATCAGCAAACATCGGT
GGCGCAGCTCCCATAGAGTCTGCAGCTCTTGTGGAACACGGTGCGGACGC
TGGCCTCGGTTCTTTCTTATCTGAGTCTGTGGGCGGAGGGAATCGGCCTG
ACCTTACGGTGGCAAGAGTAGTGGTGTCTGGCGGTCGAGGGATGAAGGAC
GGCAAACACTTCGAGATGCTGGAGCGACTGGCGGACAAACTTGGGGGCGC
AGTAGGAGCATCAAGGGCTGCTGTTGATGCGGGATTCGTTGCGAACGAAC
TTCAGACTGCCGGATCGTACACCCACATTATGGCCCTTTCCACCATGGCG
GGGAAGAATTTTATTGGCCGCTTGGGGTCGGAGTTTGGCTGTTCTCCTGT
CACAGATGTGATTCAGGTGCTCAATGAAGAGACATTCGTGCGGCCTATGT
ACGCTGGGAATGCCGTCGCAACTGTGCGCGCTCCGGGCCCTTTGAAGGTA
CTGACGGTACGTCCAACGGCATTCGAGAAATCAGCAAACATCGGTGGCGC
AGCTCCCATAGAGTCTGCAGCTCTTGTGGAACACGGTGCGGACGCTGGCC
TCGGTTCTTTCTTATCTGAGTCTGTGGGCGGAGGGAATCGGCCTGACCTT
ACGGTGGCAAGAGTAGTGGTGTCTGGCGGTCGAGGGATGAAGGACGGCAA
ACACTTCGAGATGCTGGAGCGACTGGCGGACAAACTTGGGGGCGCAGTAG
GAGCATCAAGGGCTGCTGTTGATGCGGGATTCGTTGCGAACGAACTTCAG
GTGGGACAAACCGGCAAGGTGGTGGCACCGGAGTTGTACATTGCGGTGGG
AATTTCAGGCGCGATTCAACATCTATCGGGGATGAAAGACAGCAAATGCA
TTGTGGCCATTAACAAGGACAAGGAAGCACCGATATTCCAGGCAGCTGAC
TTCGGACTTGTTGGTGACTTATTCGATGCTGTGCCAGAGCTCGAGTCCAA
GATCTGAGTGGGACAAACCGGCAAGGTGGTGGCACCGGAGTTGTACATTG
CGGTGGGAATTTCAGGCGCGATTCAACATCTATCGGGGATGAAAGACAGC
AAATGCATTGTGGCCATTAACAAGGACAAGGAAGCACCGATATTCCAGGC
AGCTGACTTCGGACTTGTTGGTGACTTATTCGATGCTGTGCCAGAGCTCG
AGTCCAAGATCTGA
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