prot_H-elongata_contig16636.4169.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16636.4169.1
Unique Nameprot_H-elongata_contig16636.4169.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length618
Homology
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: D8LPP9_ECTSI (CCCH-type Zn finger-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP9_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.410e-80
Identity = 230/619 (37.16%), Postives = 294/619 (47.50%), Query Frame = 0
Query:   36 PTPQPGLGFGASP--GDCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQHPV-GAGRGHGRSGPGSRFATGRXXXXXXXXXXXXXXSSRIPT-EAVDRSKQTCVFFVQGKCTKGDACQFSHATSPDNGPGQAFHKGIGPSSETERAGPPKEHVKPFAEQPLSAMEIIRNGNVAQQQKGSKFSVKGPEERVPAVRGSGVSSSSPKGM-------------EIGSDPFSAGPPVMIGGDGKTYVVGPDGLVPLDDVMRTIAVTAKEHTRYTPSSASCNAATVEPCQQSTVDVKTDRAHDTGMSQSLPSQSLDKAPGKSGILTLPDGGFVTRKRAAEMQLLRNGGSGQDLRCVRQRDAEEKVNQQERRFGKADGRTVPQAVGKPSIMDRLGPAKQS--TLASREKAVGPARIRPEISSQLGRNREEPRQQSAPVDRLRDGSRVNRPSPLSRPQTLGTARPTRRSDDASGLGTFGGKT-AVAR--MVVNHKPASLDFKISTLDEIKSRKAMAGEAVTEATARKTAKM------QEIKVANAVDHAVEVGSSHGIAAASSLSSVAGSTKEDVSEVAPAVP---------VPNDALQLEADDMIEFRQWL 617
            P+P PG    A+P  GDC+YFLQGTC KG+NCLFRH+ AA+A+GI+CRFWQNGFCKD  +C F HPV G G G GR G   RF  G X       XXXX    R+   E VDRSKQTCVFFVQGKCTKGDAC FSHA   + G  QA      P       G P+      +  P+ A    RN +V Q +  +  + +G E +   + G   +S    G                G     A P + +   GK YV   +G                                                      Q+  + S D+     GI+ LPDGG VTRKRAAE+QL ++     + R VRQRD  E+   QERR        +P  VG+  I+DRLGP  Q+  T  + E  V PARIR E  +   R REEPR    PV+R   G + +  S L R + + +A PTRR+    G G  G  T A+AR  +V   K ++LDFKI TLDEIKSRKA A  A    T ++          + +    A   AVE        A +S +SV  +T      V P++P         V +D  QL+A+DM EF +WL
Sbjct:   56 PSPNPGKIAAAAPAAGDCYYFLQGTCTKGNNCLFRHSEAARASGIVCRFWQNGFCKDDVNCPFLHPVRGQGMGGGRGG---RFGGGXXMAAGRGGXXXXRGGPRLQGWETVDRSKQTCVFFVQGKCTKGDACPFSHAIPSEGGVSQAAEANHLPQRAAVPEGRPQPPAMDSSPAPVPA---ARNDSVPQTKTSASEASRGEETKANGIPGQSSASVRVSGAGREEARSFSRRVGAFGDGASKADPALAVASAGKAYVTARNG------------------------------------------------------QARATSSSDQRQEAPGIIVLPDGGLVTRKRAAELQLRKDERGDAEARNVRQRDGREQGRAQERRPTSGSRGVLP--VGRVPILDRLGPVTQASDTAPTTEWIVAPARIRREAPTLQARKREEPRPHVTPVER--PGLQPSSSSSLPRSRVMASALPTRRTGGGRGAG--GDSTSAIARPAVVAQRKSSALDFKIPTLDEIKSRKAKAEVAAPRVTTKRDQAFSASNGEKPMSATPAAPDAVEE-------APTSPNSVVSTTVG----VQPSLPLXXXXXXXTVQSDPPQLDAEDMDEFSEWL 597          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: A0A401SVC6_CHIPU (C3H1-type domain-containing protein n=5 Tax=Chiloscyllium TaxID=34767 RepID=A0A401SVC6_CHIPU)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNCLFRH  AA  +  +C  WQ G C     C F+H
Sbjct:    7 DCYFYFYSTCAKGDNCLFRHCEAALGSETICTLWQEGRCFRQV-CKFRH 54          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: UPI001B7F2FAE (zinc finger CCCH domain-containing protein 11A isoform X1 n=3 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F2FAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNCLFRH  AA  +  +C  WQ G C     C F+H
Sbjct:    7 DCYFYFYSTCAKGDNCLFRHCEAALGSETICTLWQEGRCFRQV-CKFRH 54          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: A0A401PHY5_SCYTO (C3H1-type domain-containing protein n=3 Tax=Scyliorhinus TaxID=7829 RepID=A0A401PHY5_SCYTO)

HSP 1 Score: 59.3 bits (142), Expect = 1.980e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNCLFRH  AA  +  +C  WQ G C     C F+H
Sbjct:    7 DCYFYFYSTCAKGDNCLFRHCEAALGSETICTLWQEGRCFRQV-CKFRH 54          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: UPI001CF556ED (zinc finger CCCH domain-containing protein 11A-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF556ED)

HSP 1 Score: 59.3 bits (142), Expect = 2.060e-5
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQHPV 100
            DC+++   TCAKGD+C +RH  AA  N I C  W+ G C     C F+H V
Sbjct:    7 DCYFYYYSTCAKGDDCPYRHQPAALGNEITCELWEKGICSRKV-CKFRHSV 56          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: A0A139WJ07_TRICA (Zinc finger CCCH domain-containing protein 11A-like Protein n=4 Tax=Tribolium TaxID=7069 RepID=A0A139WJ07_TRICA)

HSP 1 Score: 57.4 bits (137), Expect = 4.270e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNC FRH  +A     +C FW+ G C +   C+F+H
Sbjct:   26 DCYFYYYSTCAKGDNCTFRHEPSALGCETMCSFWKEGKCLNV-HCNFRH 73          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: A0A8J6HBZ5_TENMO (C3H1-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HBZ5_TENMO)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNC FRH  +A     +C FW+ G C +   C+F+H
Sbjct:   12 DCYFYYYSTCAKGDNCTFRHEPSALGCETMCSFWKEGKCLNV-HCNFRH 59          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: A0A482VXP9_9CUCU (Zinc finger CCCH domain-containing protein 11A-like n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VXP9_9CUCU)

HSP 1 Score: 57.4 bits (137), Expect = 4.900e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNC FRH  +A     +C FW+ G C +   C+F+H
Sbjct:   24 DCYFYYYSTCAKGDNCTFRHEPSALGCETMCSFWKEGKCLNV-HCNFRH 71          
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Match: UPI000C251F32 (zinc finger CCCH domain-containing protein 11A-like isoform X1 n=3 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C251F32)

HSP 1 Score: 57.4 bits (137), Expect = 5.620e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0
Query:   50 DCHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQH 98
            DC+++   TCAKGDNC FRH  +A     +C FW+ G C +   C+F+H
Sbjct:   44 DCYFYYYSTCAKGDNCTFRHEPSALGCETMCSFWKEGKCLNV-HCNFRH 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16636.4169.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LPP9_ECTSI2.410e-8037.16CCCH-type Zn finger-containing protein n=2 Tax=Ect... [more]
A0A401SVC6_CHIPU1.970e-548.98C3H1-type domain-containing protein n=5 Tax=Chilos... [more]
UPI001B7F2FAE1.970e-548.98zinc finger CCCH domain-containing protein 11A iso... [more]
A0A401PHY5_SCYTO1.980e-548.98C3H1-type domain-containing protein n=3 Tax=Scylio... [more]
UPI001CF556ED2.060e-545.10zinc finger CCCH domain-containing protein 11A-lik... [more]
A0A139WJ07_TRICA4.270e-544.90Zinc finger CCCH domain-containing protein 11A-lik... [more]
A0A8J6HBZ5_TENMO4.530e-544.90C3H1-type domain-containing protein n=1 Tax=Tenebr... [more]
A0A482VXP9_9CUCU4.900e-544.90Zinc finger CCCH domain-containing protein 11A-lik... [more]
UPI000C251F325.620e-544.90zinc finger CCCH domain-containing protein 11A-lik... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 144..169
e-value: 1.8E-4
score: 30.9
coord: 75..100
e-value: 0.0037
score: 26.5
coord: 47..71
e-value: 7.3E-4
score: 28.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 143..170
score: 14.746
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 45..72
score: 13.479
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 74..101
score: 12.258
NoneNo IPR availableGENE3D4.10.1000.10coord: 46..106
e-value: 1.7E-10
score: 42.8
NoneNo IPR availableGENE3D4.10.1000.10coord: 136..200
e-value: 1.1E-6
score: 30.4
NoneNo IPR availablePFAMPF18345zf_CCCH_4coord: 149..167
e-value: 1.2E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR15725:SF0ZINC FINGER CCCH-TYPE-CONTAINING 11Acoord: 50..488
NoneNo IPR availablePANTHERPTHR15725ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAININGcoord: 50..488
IPR041686Zinc-finger CCCH domainPFAMPF15663zf-CCCH_3coord: 49..98
e-value: 4.7E-12
score: 46.1
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 76..99
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 143..168
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 51..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16636contigH-elongata_contig16636:1909..5266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16636.4169.1mRNA_H-elongata_contig16636.4169.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16636 1767..5421 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16636.4169.1 ID=prot_H-elongata_contig16636.4169.1|Name=mRNA_H-elongata_contig16636.4169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=618bp
MAHVFGTGAGFGGGYGDSGADNAPHSFEQPTSAPLPTPQPGLGFGASPGD
CHYFLQGTCAKGDNCLFRHNHAAKANGILCRFWQNGFCKDAASCSFQHPV
GAGRGHGRSGPGSRFATGRGMSGMRGAFSGGRGSSRIPTEAVDRSKQTCV
FFVQGKCTKGDACQFSHATSPDNGPGQAFHKGIGPSSETERAGPPKEHVK
PFAEQPLSAMEIIRNGNVAQQQKGSKFSVKGPEERVPAVRGSGVSSSSPK
GMEIGSDPFSAGPPVMIGGDGKTYVVGPDGLVPLDDVMRTIAVTAKEHTR
YTPSSASCNAATVEPCQQSTVDVKTDRAHDTGMSQSLPSQSLDKAPGKSG
ILTLPDGGFVTRKRAAEMQLLRNGGSGQDLRCVRQRDAEEKVNQQERRFG
KADGRTVPQAVGKPSIMDRLGPAKQSTLASREKAVGPARIRPEISSQLGR
NREEPRQQSAPVDRLRDGSRVNRPSPLSRPQTLGTARPTRRSDDASGLGT
FGGKTAVARMVVNHKPASLDFKISTLDEIKSRKAMAGEAVTEATARKTAK
MQEIKVANAVDHAVEVGSSHGIAAASSLSSVAGSTKEDVSEVAPAVPVPN
DALQLEADDMIEFRQWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041686Znf-CCCH_3
IPR036855Znf_CCCH_sf