mRNA_H-elongata_contig16632.4167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16632.4167.1
Unique NamemRNA_H-elongata_contig16632.4167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 1.460e-142
Identity = 212/265 (80.00%), Postives = 240/265 (90.57%), Query Frame = 3 
Query:    3 VFNAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLRT 797
            VFN+VNL QIFV+AM+ASAIWWQSEN++DIAG MFFISIQQAFNGLNTSMRVFPPER LMIRERSTGSYRVGPYFLAK+TSD+G+YTAAPILYATA+YWC GLRPEAGAFF  LLLFMG+V+VGQSIGLLIST+I+DIFTAQSFSFVLIL LMLFGGFYVNN+NVPEG+ W+KYLSFL++GFGGLLH E HG+EYSC+ A GKGLSGL ACA  GSG VTG +ILDE+GF DV VW+N+ ILA M+VG+R LTY++MR  TK RT
Sbjct:  375 VFNSVNLTQIFVVAMMASAIWWQSENVSDIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSTSDIGLYTAAPILYATAVYWCVGLRPEAGAFFTFLLLFMGQVIVGQSIGLLISTSIADIFTAQSFSFVLILSLMLFGGFYVNNNNVPEGLGWLKYLSFLFYGFGGLLHNEFHGREYSCENATGKGLSGLDACAANGSGTVTGQDILDEFGFSDVNVWQNVGILAAMIVGMRFLTYLLMRRFTKTRT 639
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BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.140e-90
Identity = 148/265 (55.85%), Postives = 197/265 (74.34%), Query Frame = 3 
Query:    3 VFNAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLRT 797
            VF+ VN+ QI  +A+IASA+W+QS NI+DI GV FFISIQQ+FN L++ MRVFP ER LM+RERSTGSYRVGPYFLAK+ SDM +Y   P +YAT +YWC GLRP A AF  +L++F+ E+M  QS+G+LIS AI D   AQSFSFVL+L +MLFGGFYVNND +P+GI WIKYLSFLY G+G LL  E  G+ ++C+ AE +   G      GG   ++GD++L  Y F  +KVW+++++L  M + LR +TY ++R +TK+ +
Sbjct:  446 VFSGVNIFQILAVAVIASAVWFQSNNISDITGVFFFISIQQSFNALSSIMRVFPAERGLMMRERSTGSYRVGPYFLAKSFSDMALYVLFPAIYATLVYWCVGLRPSASAFVVYLVIFLSEIMAAQSVGMLISAAIKDFAAAQSFSFVLVLVIMLFGGFYVNNDRIPQGIRWIKYLSFLYWGYGALLVNEFEGRSFACN-AEDEARYG------GGDCPISGDDVLAVYDFQHIKVWQSLLVLWAMFLALRFMTYCVLRKTTKMHS 703
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: R1DY78_EMIHU (ABC transporter domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DY78_EMIHU)

HSP 1 Score: 204 bits (520), Expect = 6.640e-54
Identity = 110/258 (42.64%), Postives = 161/258 (62.40%), Query Frame = 3 
Query:    3 VFNAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMR 776
            V+N  N+ QI  +A+IA+ +W  +  ++DI GV+FF++IQQAFN  NT +R+FP ER LM+RER  G+YR+ PYFLA++ +D       P+LYA  IY+  GLRP AG FF +L L +  V  GQSIGL IS  I D+  +   SF+ +L +MLFGGFYV  D +P  I+W++Y SF++ G+ G++  E  G+E  CD+A G G  G  AC        +GDE++   G+  + V     +L  + + LR+  Y+ +R
Sbjct:  362 VYNLTNIFQILAVAVIAAILWSGATTVSDIKGVLFFVNIQQAFNAQNTVLRLFPLERQLMLRERRCGTYRMLPYFLARSAADSFAILVLPVLYAIIIYFSVGLRPGAGPFFTYLALSLSTVFTGQSIGLFISLLIPDLALSSCVSFIFVLMVMLFGGFYVGVDRIPGWISWMRYASFMFWGYSGMVINEFGGREVDCDQA-GVGEFG-DACP------FSGDEVIRALGYDGLSVGLCGAMLITIALALRVAAYLCLR 611
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A7S3XRQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRQ7_HETAK)

HSP 1 Score: 176 bits (447), Expect = 1.790e-44
Identity = 99/266 (37.22%), Postives = 144/266 (54.14%), Query Frame = 3 
Query:    9 NAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVI------LAGMVVGLRLLTYVIMRNSTK 788
            N V+  Q   ++ I  A+WWQ+ N+ DI G +FF++I QAFN +   ++VFP +R L++RER  G YRVG YFLA+T SD       P+LYA   Y   G+   A  FF ++ LF   +M  Q+ GLL+S+   ++  A   +F  +L L+L GGFYV ND +P GI W+  +SF+Y GF G+      G+ + C   E            GG   V+GD IL E    D+       +      L  + VGLRLL ++++R + K
Sbjct:  264 NKVSFIQCLAVSAIVCALWWQTNNVNDILGFLFFVTINQAFNVVQAMVKVFPAQRALLVRERGAGYYRVGAYFLARTLSDSLTSYIFPMLYALLCYTGTGVVSSAEDFFTYMALFFSVIMAAQAYGLLLSSMFREVQIATIVAFTSVLALLLIGGFYVENDRLPVGIRWLTNISFIYWGFTGMSVNVFSGKSFDCTMLE-------TPDELGGGCPVSGDVILMERSIKDLSAGRGATLGNCFLALWVLTVGLRLLAFLVLRRAIK 522
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BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.880e-43
Identity = 94/264 (35.61%), Postives = 150/264 (56.82%), Query Frame = 3 
Query:    6 FNAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRP-EAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLR 794
            F+ VN+  I + A    A+W+Q+ N+ D+ G++FF+ + Q F+   T  R+FP ER+LM+RERSTGSY+VGPYFLAKT SD+      P +YA  +Y   GL       FF ++ +F   VM GQS G   S A++D+  A    F  IL +++ GGFY+    +P G+ W+ YLSF+Y G+  ++ ++  G  Y C KA  +     A C       +TG+ ++ + GF D  +   + ++    +  R+L Y+ +R +T+ +
Sbjct:  412 FDRVNVLGILLTAACMCAMWFQATNLKDLVGLLFFLVLNQPFSMAATVCRIFPKERSLMMRERSTGSYQVGPYFLAKTCSDLTAGYVVPTIYAIMVYCFCGLYTGSVSHFFLYMAIFWAMVMTGQSYGYFWSAAVTDLPMANMLVFTTILFMVIAGGFYIPMARLPTGLQWLPYLSFIYWGYSAIMALQFEGNTYDCTKA--RPFEYGADCP------ITGENVIKKTGFDDAGLGMGLGMVVFWAILYRILAYIFLRMNTRTK 667
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BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A7S2VUS8_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VUS8_9EUKA)

HSP 1 Score: 157 bits (398), Expect = 1.020e-38
Identity = 92/261 (35.25%), Postives = 154/261 (59.00%), Query Frame = 3 
Query:    6 FNAVNLGQIFVIAMIASAIWWQSEN----IADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLL-HVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIM 773
            F+ + + Q+  +A+IAS +W+++EN    I D  G +FFISI  AF  + +++  FP ER +++RERS GSYR+  Y++AK  ++M +    P  +   +YW   L  + G FF    L +  V +  ++G+L+S A  +   A     VL+LG ML GGFYVN +N+P+ + W+++LSF+ + FG L+  V   G E+SC        S  +AC DGG   +TG ++L + G  ++ +   +V+ A +VVG+++ TY ++
Sbjct:  143 FDTLQIFQVAAVAIIASLVWFRTENKEDAIEDRFGEVFFISIFWAFFPMFSAVSTFPSERAVLLRERSQGSYRLSAYYVAKVVAEMPLNWFLPSGFIILVYWMTALNDDVGVFFAVWFLLILNVELAAALGMLVSAAEPNPKRALVIVSVLVLGSMLLGGFYVNPENIPDWLRWMQWLSFVKYSFGALVTQVFGEGSEWSCASP-----SEFSACDDGGP--ITGADVLAQRGIENLPILYAMVLFA-LVVGIKVATYFVL 395
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A8J4GP20_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GP20_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 2.240e-35
Identity = 87/263 (33.08%), Postives = 143/263 (54.37%), Query Frame = 3 
Query:   27 QIFVIAMIASAIWWQ-------SENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLR 794
            Q+ V+A++    WWQ       ++ + D+ G++FF+ +   F+ L  ++  FP E  ++++ER +G YR+  Y+LA+T SD+ +    P L+   IYW AGLR +AGAFF H    +  V+  QS+GLLI   + +    Q+ + + +L  ML GG+YV    +P  IAW+KY+SF+Y G+  LL +E   + Y C    G   +G   C+      V   +I D     D  V + + IL  M++ LRL+ Y  +++ T  +
Sbjct:  525 QLLVVAVLGGLFWWQIGVRLDSTQAVLDVGGLLFFVELFMGFSTLFAALFTFPLEFQMLVKERQSGMYRLSAYYLARTASDLPMDCFLPSLFVWIIYWMAGLRIDAGAFFAHWASVLLIVLTSQSVGLLIGATVINPQNGQTIATIFMLATMLVGGYYVRG--MPVWIAWLKYVSFIYWGWNLLLKIEFRHRPYDCGLVAGAA-AGAKNCS------VKQADIFDIN--VDAPVTKEVCILIAMLIFLRLVIYYALKHKTTFK 776
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A835TGP4_CHLIN (ABC transporter domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TGP4_CHLIN)

HSP 1 Score: 154 bits (389), Expect = 2.750e-35
Identity = 94/265 (35.47%), Postives = 142/265 (53.58%), Query Frame = 3 
Query:   18 NLGQIFVIAMIASAIWWQ---SENI---ADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLR 794
            NLGQ+  +A+I   +W+Q      I   AD+ G++FF  +  +F  L +++  FP E  ++ +ER  G YR+  Y+ A+T SD+ I    P L+   +YW  GLRP AGAFF +    +  V++ QS GLL      D  +AQ+ + V++L  +L GGFYV    VP  I WIKY+SF+Y G+  LL V+  G  Y+       G  G         G+ T          P+      +++L GM+V LR LTYV++R+ T++R
Sbjct: 1164 NLGQLVAVALITGLLWFQRGAGRGIGVGADVTGLLFFELLFPSFRSLFSALFTFPNEYRMLKKERPAGMYRLSAYYAARTASDLPIELIYPSLFIIIVYWLGGLRPSAGAFFSNWAAMLLVVLLAQSWGLLFGGTFMDPKSAQTVTTVVMLTFLLVGGFYVKQ--VPAWIGWIKYISFVYWGYNLLLKVQFGGATYT-------GADGAPVSVQHSLGLPTD---------PNASKAPEVLVLLGMLVILRSLTYVVLRHKTEVR 1410
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A7S4F7N7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F7N7_CHRCT)

HSP 1 Score: 147 bits (372), Expect = 4.150e-35
Identity = 77/149 (51.68%), Postives = 100/149 (67.11%), Query Frame = 3 
Query:    3 VFNAVNLGQIFVIAMIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLI 449
            V+N  N  QI  +A+IA+ +W    NI+D  GV+FF++IQQAFN  NT +R+FP ER+LM+RER  GSYR+ PYFLAK+ SD       P++YA  IY+  GLR EAGAFF +L L +  V  GQSIGL+IS A+ D   A   SFV +
Sbjct:  264 VYNKTNCFQILAVAVIAALLWSGDSNISDRKGVLFFVNIQQAFNAQNTVLRLFPRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAV 412
[Close]
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Match: A0A383VFF3_TETOB (ABC transporter domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VFF3_TETOB)

HSP 1 Score: 151 bits (381), Expect = 1.700e-34
Identity = 94/263 (35.74%), Postives = 141/263 (53.61%), Query Frame = 3 
Query:   36 VIAMIASAIWWQSEN------IADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRERSTGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHLLLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDNVPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADGGSGIVTGDEILDEYGF------PDVKVWENIVILAGMVVGLRLLTYVIMRNSTK 788
            ++A+I    WWQ          +D+ G++FF  +  AF  L TS+  FP +  ++++ER++G YRV  ++++   SD+ +  A P L+   IY+  GLR  A AF  +L   +  V+V QS+GLL+  A  +  TAQ+ + +++LG ML GG+YV    +P  I+WI+YLSF+Y GF  LL +E  G  Y    A G G SG AA A  G        + D          P+      + +L GM+V LRLL Y  +R  TK
Sbjct:  614 IVALITGMFWWQRGRGGSLLAASDVVGLLFFELLFPAFTALFTSLFTFPNDYRMLLKERASGMYRVSAFYVSSALSDLPMDCALPALFVVIIYFMGGLRLTAAAFLSNLAALVLNVLVAQSMGLLLGVAFMNPKTAQTVASIIMLGFMLVGGYYVRG--IPAWISWIRYLSFVYWGFNLLLKIEFAGATYYSCGASGLG-SGEAAAA--GPAAAPCHSVPDLQAALQLPTDPNASPALELGVLFGMLVALRLLVYYTLRQKTK 871
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16632.4167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB5_9PHAE1.460e-14280.00ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YP26_9STRA2.140e-9055.85ATP-binding cassette superfamily n=1 Tax=Tribonema... [more]
R1DY78_EMIHU6.640e-5442.64ABC transporter domain-containing protein n=3 Tax=... [more]
A0A7S3XRQ7_HETAK1.790e-4437.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MQ19_9STRA1.880e-4335.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2VUS8_9EUKA1.020e-3835.25Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A8J4GP20_9CHLO2.240e-3533.08ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835TGP4_CHLIN2.750e-3535.47ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S4F7N7_CHRCT4.150e-3551.68Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A383VFF3_TETOB1.700e-3435.74ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16632contigH-elongata_contig16632:418..6097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.3
Seed ortholog evalue2.5e-114
Seed eggNOG ortholog2880.D8LI56
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_005290.1
Exons7
Model size1962
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.5188322-UTR-H-elongata_contig16632:417..4611622929973.5188322-UTR-H-elongata_contig16632:417..461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16632 418..461 +
1691679230.2938938-UTR-H-elongata_contig16632:417..4611691679230.2938938-UTR-H-elongata_contig16632:417..461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16632 418..461 +
1622929973.809543-UTR-H-elongata_contig16632:4935..60971622929973.809543-UTR-H-elongata_contig16632:4935..6097Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16632 4936..6097 +
1691679230.3645198-UTR-H-elongata_contig16632:4935..60971691679230.3645198-UTR-H-elongata_contig16632:4935..6097Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16632 4936..6097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.5321398-CDS-H-elongata_contig16632:461..5601622929973.5321398-CDS-H-elongata_contig16632:461..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 462..560 +
1691679230.305572-CDS-H-elongata_contig16632:461..5601691679230.305572-CDS-H-elongata_contig16632:461..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 462..560 +
1622929973.7233949-CDS-H-elongata_contig16632:973..11921622929973.7233949-CDS-H-elongata_contig16632:973..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 974..1192 +
1691679230.3134134-CDS-H-elongata_contig16632:973..11921691679230.3134134-CDS-H-elongata_contig16632:973..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 974..1192 +
1622929973.739174-CDS-H-elongata_contig16632:1601..17071622929973.739174-CDS-H-elongata_contig16632:1601..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 1602..1707 +
1691679230.321391-CDS-H-elongata_contig16632:1601..17071691679230.321391-CDS-H-elongata_contig16632:1601..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 1602..1707 +
1622929973.7585845-CDS-H-elongata_contig16632:2273..23131622929973.7585845-CDS-H-elongata_contig16632:2273..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 2274..2313 +
1691679230.3290603-CDS-H-elongata_contig16632:2273..23131691679230.3290603-CDS-H-elongata_contig16632:2273..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 2274..2313 +
1622929973.7711282-CDS-H-elongata_contig16632:3027..30881622929973.7711282-CDS-H-elongata_contig16632:3027..3088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 3028..3088 +
1691679230.3379004-CDS-H-elongata_contig16632:3027..30881691679230.3379004-CDS-H-elongata_contig16632:3027..3088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 3028..3088 +
1622929973.781897-CDS-H-elongata_contig16632:3549..36681622929973.781897-CDS-H-elongata_contig16632:3549..3668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 3550..3668 +
1691679230.3451736-CDS-H-elongata_contig16632:3549..36681691679230.3451736-CDS-H-elongata_contig16632:3549..3668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 3550..3668 +
1622929973.7943826-CDS-H-elongata_contig16632:4823..49351622929973.7943826-CDS-H-elongata_contig16632:4823..4935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 4824..4935 +
1691679230.356897-CDS-H-elongata_contig16632:4823..49351691679230.356897-CDS-H-elongata_contig16632:4823..4935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16632 4824..4935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16632.4167.1prot_H-elongata_contig16632.4167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16632 462..4935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16632.4167.1

>prot_H-elongata_contig16632.4167.1 ID=prot_H-elongata_contig16632.4167.1|Name=mRNA_H-elongata_contig16632.4167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MIASAIWWQSENIADIAGVMFFISIQQAFNGLNTSMRVFPPERNLMIRER
STGSYRVGPYFLAKTTSDMGIYTAAPILYATAIYWCAGLRPEAGAFFQHL
LLFMGEVMVGQSIGLLISTAISDIFTAQSFSFVLILGLMLFGGFYVNNDN
VPEGIAWIKYLSFLYHGFGGLLHVELHGQEYSCDKAEGKGLSGLAACADG
GSGIVTGDEILDEYGFPDVKVWENIVILAGMVVGLRLLTYVIMRNSTKLR
T*
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mRNA from alignment at H-elongata_contig16632:418..6097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16632.4167.1 ID=mRNA_H-elongata_contig16632.4167.1|Name=mRNA_H-elongata_contig16632.4167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5680bp|location=Sequence derived from alignment at H-elongata_contig16632:418..6097+ (Himanthalia elongata Himel1 dioecious)
AGGTTTTTAACGCCGTGAATCTTGGGCAGATCTTTGTGATCGCCATGATC
GCGTCCGCCATCTGGTGGCAAAGCGAAAACATCGCCGACATTGCCGGCGT
GATGTTCTTCATCTCTATTCAGCAGGCCTTCAACGGACTCAACGTCAGTC
AATACACAGAGACAGCGTTTCGTCCTCTTTTTATTTATTTTGCTATATTG
TATTATTTTAGTTCACTTTTTACTTTTTTTTTTTTTTTTTCCCCCCCCCC
CCCCCCCCCTTTTTTTTCTTCTTAAAAAAAAAAAACTGTTCCCACCTCCC
AACCCCGCTCTCACTCCCGCAACCCACTAAGACAAGCTCCTTCAAATATT
TCATGTTGGCCAAGGCGTGCGCTGCCTCCAACGTTCTAGACGGGGTTTGT
GCCACCTATATCCACCAACACCGTCCCCCCCGCCATCCGTTTACGCCTTA
AACTCATTCGCCGGACCGGTGACAAGTCAAGACATGCCATGTCACGTCAT
CAAGTCCTCTCGACCGGGTCTTGTGCCGTGTCGTGCCGTGCTATGCCATC
CCACAGACGAGCATGCGAGTCTTCCCCCCGGAGCGCAACCTCATGATCCG
CGAGCGATCAACGGGCTCCTACCGCGTAGGGCCCTACTTCCTGGCCAAGA
CCACGAGCGACATGGGCATCTACACGGCGGCCCCCATCCTCTACGCTACC
GCCATCTACTGGTGCGCCGGCTTGAGGCCGGAGGCGGGAGCGTTTTTCCA
ACACTTGCTACTCTTCATGGGCGAGGTGAACGGCTGCTGCTCAAGGGTTT
CGAGTTTTTGTGTGAAGGCGGTGGAATATAGGGGGGGTGAGGGGGTGAAA
GTTAAATGCGCCATGTGTGTCCTTGCGCTTGATTGGCATGTGTAACAGAC
GGCAGTGCGGTATTAAAGTGTAATTATAGTTTAACTGTGTGTGACTCGGT
CACGAAACGCCTCGCTGCCAAAGATTTAAAGACTGACTGCCGTATGTCTT
GGTTGCTGTGCCTATTGCAGTATTACAGTACTACTCTTTCATGGAGTTGT
TGCTCTTCTTGTTGTTGTTATTGACTAATACACTGTCAAAATGTTGTGTC
TGAGTGCGTGCGTTTCTGTGTGTGTGTGTGCGTGCGTGTGCGTGCGCCTA
TCTTTCGCTTGATTTCCCGCCTCTTCCCTCGAAGGTGATGGTCGGGCAGA
GCATCGGGCTCCTGATCTCTACCGCCATCTCAGACATATTTACGGCGCAG
TCATTTTCCTTCGTGCTTATCCTAGGGCTCATGCTCTTTGGTGAGTGACA
CCTGACCCCGCCCCCCTCCCCCCCCCCGTCCAAGTGTTGCTTTTTTGGCG
ACAAAGAGAGGCCTTACGTACTTACTCTTTCTTCATCGATCACCTCTCGG
TGCTTGCTCCCCCAAATCCTCCCTTTCGAGGGTAGATAAATAATGTGGCC
TCCTGGTGGAAACCCTTCGGGCGAGGCCCTCTTAGCTAGGTATGAATACA
AATACACAATGTACCTGAGGCCCTTCCCCCGCGCCTCCTTAGTTGTGGCC
CATTTTTTTTCTTCCTTCAATTGTTCAGCCTCCGCGATTGTTTGTCAGAA
GCGTCATCGCCTCGTTTCCTGGCTTTGGCTGATGATGCAACAACACCCGC
GGCTTCCGCAGAGCGCGGGTGCATGGCCCTGCCTCGTGATCATTTCCGCA
GAGCACGGATTCTTCTTGATTTCTACCCACAATAATAGTAAACCACACGA
AAATATTTTTACACATGGTACATCTATCTACATTCCTGCCCCCTTGCATC
CCCCCCTCCCTATCCACCGCCTACCCCTCATGTAAACTCCCCGCGGCATG
TCGAAGGCGGTTTCTACGTGAACAACGACAACGTGCCGGAAGGAATGTGA
GCTATAATATGATTAACAGACGGAATCAGCGTTGTTCCGCGGTGTCTCTT
CGCCCCACCCGGGCTGGACGGGTCTATATTATCTCTCTCTATATATATAT
AATACATTTGCTGTATGGGTTATGATAACACAAAATATATCGCAGATAGT
TCGATAACGACGACCTGTCTTATCTTATCTGCATTGCACCCGCAACACAA
AAAGTTATACGTTATATTGCGGCGATATATATGTATATATATATATTTAC
ACCATAAAGGTATAATTTCATAATTTCAAGGTATATAGCGACAATATGTA
TATCTTATTTACGTCATAGACGTATCACACCGATTTACCTAGCGGCGACT
GGTCATACGAATAATATACGAAGTATGAGTTCATGCTGTTGGACCTCTCG
TGGAGACACCCGCTTTGGATTAGCGTGCACTGTTATTTTACGATTTGGAA
TTAGGCGTTTTCTTTCGCTGGGCACGAACTTCATATGCTAGCACTTTATT
TGGCACAACACTTCGCGTGTCTTTATATAACGCCTGATCGGGGTTTCCGC
TTGAAATCCATGTTTTTTTTTTACAAATATCAAGGGGAAAGCAAAGCTTC
TGGAGTTCAAGCCTAATAGTGTTCGTACTTTTCTCCTGTTCGCTGGTGTC
CGCGTTGACCGGCCTATCTGGGGTCGCGACCGGACGCTGCTCTCTTGATG
CCCCTTGCAGCGCGTGGATCAAGTATCTCTCGTTCTTGTATCATGGATTC
GGGGGTCTCCTGCACGTCGAGGTGTGGGCCTGTGGTGCGGCAGAGTGCTT
TGAAGATAATAATATATAACCATGCGATATGCTCGCAAAGGGAACATGAA
AAAAAGGAACACGGCCAGAAAAAAGGGCACACGACGAGCCATAGAACACA
TAGTTTTCGGTGATTATTGACGGTTCGTTGCAAAGGCCCACGATTTTTTG
TTTTTTGTTTTTGTTATGTTGTGGTATTTATTAACGATTTGTTTATTTCA
ATATTTTCAACCATCCGAGCATCCACTCCTTCTTAGACCCGTGTGAGAGG
TGCAGCCGAGGGGACAAACTATTGTCAGGTGTTCGAATGAATGTGTACAT
TAGTTTAGTCTAGTTTAGTTTAGTTTAGTTTAGTTTCATTATTTTATTGT
TTTTGTAAATATATTTCTTATTTCCTTCTTATTTTACCCTTTCACCTTAA
ATACGGCCCACGTACGTCCCCTCCCCACGCAGCTGCACGGACAAGAATAC
AGCTGCGACAAGGCCGAGGGGAAAGGGCTTTCAGGCCTAGCGGCGTGCGC
GGACGGGGGTTCGGGGATCGTAACCGGGGACGAGATCCTCGACGAGTATG
GGTAAGAAAAAGAAAAGCCGATGACGATTACACAGAGGCGAGGCAGTTCT
TCTTGTATGCTGCTTTGGATATCTTACTATTACTCTTACTCTTACTAATT
GTAGCAGGATTGTGGTTGGAATCGTTCTCGCTACCGAGAGGGGGGAGGGG
CATGCAGCACACACTTCGTATATACAAAATCACTTGAATTTGAAACGAAT
AATCTACAAAGCTAGAGTAAGATTGCAAAGAAAATCGTTTTTTTTATAAT
TTTCTCGTCGCCCCCCCCCCCCATGCCCCCCTTCTTGCACTCCTTCGAGC
ATCCTCCCTCAATCCTTTCAGCTGATTTTCGTGATTCATCCCCGTCGGCT
AGTTTCAGGCACTCTAAATAGCGCGTTAACACTGCGTTATTGTATCCTCT
CGGGGAAAAGAGCCCCCCACCCCCTACTCATATTGTATCTTGTGGCATGG
AGCTGTAGTATTAATTGTAGGTCATGTGGGTATTATAGCTGGTTCATGCA
GTGTGTCCCGCCGTGAGATCAGAGACCTCGGCCGAAGAGCCTTGTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCCCAGAGGAGTGAAGCGCATCACA
TTCTAGAGGGCGCCTGCTGAACAACGGGTTGTTGTTGGAAAAGCCCTACA
GCAAACTTATGCATACTTACTTATGAGAAGAGTAGTATTACTAATAGTAT
TAAACATTAATGCTATTCGTCGCCACGAGGAGATTATTCAAGAACACATT
ATTAGACTATAGTATATACAGTAGGATGAGTGCATCTTACAACTACACCG
TTGTGTGTGTGGAGTTCGATCGGCGCCGATGCGTTCCTTTGCGCGGAGAT
CATGCGTCCCTTTGTGGCACTCGATCGCGCCCGTTGAATGGGCAACATTT
GGTTACAGTACCCGATGTGCGTCCAATGATCCCGTGGGTTGTCCGGTTTG
GCGCAGCAAGCTCAAGGATGATGACGAAAATCTTGTATAATATACTCTTT
CTTTGTGAAACGCAGCCTGACCGGTAGGCGAAAACCCGGTAGATCTGCTC
CGCGCCGACATTGTTGAGATCCGTTAGGGATGCGGCATGTCTATAACATG
GGGAAACCCTCGTCCTCCTCTTTTTTCTCTTTTATTTCGTGACGCGTGCA
CGATAGGTTCCCGGATGTCAAGGTCTGGGAGAACATCGTCATCCTTGCCG
GCATGGTCGTCGGTTTGCGGCTGTTGACCTACGTCATAATGCGAAATTCC
ACCAAGCTCCGGACCTGACAGAGCTCTTTCGGAGCAAAGAGCAGCGAACA
CTGGCGACATGCAAGCGCGCAGCCTTTTTTTCTCATCCGGCCTAACGTTT
GTGTAACAGCTGAGCCAGGTTGATCCATATTCATCCACGGGAGGTAGCCG
CAGCCGTGGCGGCTGTGTTTTTTCTCTGGCGCAGTCAATCAGTCATTCGA
CGCGATTCTTTTTCGCAGTACAGTAGAGCACAGCACACACTCAAGCATCA
AGTATAAACGTTGTATGCATAACTAAGGATACACACAACGGAAGAGTGGT
AGGTACTCGTAATACCTTTGCGGAGTACAAGAGACATTCTGTACGACGTT
TTCAGGTCTCATCTACCGTTGATATACCAAGCGCTATTCCCCGTCAAACG
CTATCACTACGGATAAGGATAACTCGAGTCGTTGCCTCTATCTAGTTATA
ACGCCTGTGTTTCCTACCTACTCCTACCAGGAGCCCAAGCCACGTGCCTG
GTGTGCAGGTAGACCGGTAGCCACTCAAAAAGAACAAGGTGGTTTGTTGT
GGGAATAGAGAAAAATTGGCGCGGGCGAAGCGCGGGTTTGTGTGAGAACC
TCTAGTACAGTATTGGGAAAGGCATTTGCTCTCTGGTTAAAGGTTTTGAA
CTTCGAGAGGCCAGGTGGCGGTTGCTGAAGGCTGTCTTTCCTTGGCGGTC
ACGTGCGTTTCAAGAAGTTCGAACGCCTGCCAGAGATGGAGAGAGAGAGA
GGTGGGTGGGAAGTCGAGGACTAAATATCTGTGCGAAGCACCGTGTACAA
AAATACCGTATTTTTGCGTGTGGCGAAAAAACGGTGATAACGATTGGAAA
ATAGTGGACAGTCCCGCGCACTCGATGAAAGGAGCCTCTGATTGCGCGCC
GATCGGATGGTATCGATCCATCTCGCGGCTCGGGATGTGTGTGTTTACGT
GTGTGCGTGGAACCACCCACTTTCTCTTTTGTAAGTTCATCGCAGATCAT
TCAATTTCTGTACCGCAGGGCACAGGCCAGATTTTGCGCTCGTGTGAAGA
TCTCCACGCATTGCCGCCCGAGTCATTAAAATGGTACGGGGAGTCGGGGA
TCAATTCAACGAAGAAGGTGGTTCTCTTATGGTTCTTTTATGGTTCTTAT
GTTCAGTGTTAGCGGAAAGTGGGAGCAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig16632:418..6097+

>mRNA_H-elongata_contig16632.4167.1 ID=mRNA_H-elongata_contig16632.4167.1|Name=mRNA_H-elongata_contig16632.4167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig16632:418..6097+ (Himanthalia elongata Himel1 dioecious)
ATGATCGCGTCCGCCATCTGGTGGCAAAGCGAAAACATCGCCGACATTGC
CGGCGTGATGTTCTTCATCTCTATTCAGCAGGCCTTCAACGGACTCAACA
TGATCGCGTCCGCCATCTGGTGGCAAAGCGAAAACATCGCCGACATTGCC
GGCGTGATGTTCTTCATCTCTATTCAGCAGGCCTTCAACGGACTCAACAC
GAGCATGCGAGTCTTCCCCCCGGAGCGCAACCTCATGATCCGCGAGCGAT
CAACGGGCTCCTACCGCGTAGGGCCCTACTTCCTGGCCAAGACCACGAGC
GACATGGGCATCTACACGGCGGCCCCCATCCTCTACGCTACCGCCATCTA
CTGGTGCGCCGGCTTGAGGCCGGAGGCGGGAGCGTTTTTCCAACACTTGC
TACTCTTCATGGGCGAGACGAGCATGCGAGTCTTCCCCCCGGAGCGCAAC
CTCATGATCCGCGAGCGATCAACGGGCTCCTACCGCGTAGGGCCCTACTT
CCTGGCCAAGACCACGAGCGACATGGGCATCTACACGGCGGCCCCCATCC
TCTACGCTACCGCCATCTACTGGTGCGCCGGCTTGAGGCCGGAGGCGGGA
GCGTTTTTCCAACACTTGCTACTCTTCATGGGCGAGGTGATGGTCGGGCA
GAGCATCGGGCTCCTGATCTCTACCGCCATCTCAGACATATTTACGGCGC
AGTCATTTTCCTTCGTGCTTATCCTAGGGCTCATGCTCTTTGGTGATGGT
CGGGCAGAGCATCGGGCTCCTGATCTCTACCGCCATCTCAGACATATTTA
CGGCGCAGTCATTTTCCTTCGTGCTTATCCTAGGGCTCATGCTCTTTGGC
GGTTTCTACGTGAACAACGACAACGTGCCGGAAGGAATGCGGTTTCTACG
TGAACAACGACAACGTGCCGGAAGGAATCGCGTGGATCAAGTATCTCTCG
TTCTTGTATCATGGATTCGGGGGTCTCCTGCACGTCGAGCGCGTGGATCA
AGTATCTCTCGTTCTTGTATCATGGATTCGGGGGTCTCCTGCACGTCGAG
CTGCACGGACAAGAATACAGCTGCGACAAGGCCGAGGGGAAAGGGCTTTC
AGGCCTAGCGGCGTGCGCGGACGGGGGTTCGGGGATCGTAACCGGGGACG
AGATCCTCGACGAGTATGGCTGCACGGACAAGAATACAGCTGCGACAAGG
CCGAGGGGAAAGGGCTTTCAGGCCTAGCGGCGTGCGCGGACGGGGGTTCG
GGGATCGTAACCGGGGACGAGATCCTCGACGAGTATGGGTTCCCGGATGT
CAAGGTCTGGGAGAACATCGTCATCCTTGCCGGCATGGTCGTCGGTTTGC
GGCTGTTGACCTACGTCATAATGCGAAATTCCACCAAGCTCCGGACCTGA
GTTCCCGGATGTCAAGGTCTGGGAGAACATCGTCATCCTTGCCGGCATGG
TCGTCGGTTTGCGGCTGTTGACCTACGTCATAATGCGAAATTCCACCAAG
CTCCGGACCTGA
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