mRNA_H-elongata_contig16630.4165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16630.4165.1
Unique NamemRNA_H-elongata_contig16630.4165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.650e-9
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   22 WVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKRFSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMSRRVVADSG 267
            WV D+GAS HF N+S+   +       +R  +G   +IEG G + L + +   +V ++L NV+Y+P L +NL S   V+  G
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQHG 378
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.480e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:   54 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 130
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.720e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:  280 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 356
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5KRW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.820e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:  507 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 583
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:  478 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 554
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:  858 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 934
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BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.030e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L++NL+S
Sbjct:  956 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVS 1032
[Close]
BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.470e-6
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK+ F+I GYGD+ + + S      L L  VA+VP+L +NL+S
Sbjct:  321 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELIYNLVS 397
[Close]
BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Match: A0A6H5LDW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDW7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.330e-6
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   16 ERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKR-FSIEGYGDLILHLRSEGEVVHLKLCNVAYVPQLSHNLMS 243
            ER+V DTGA+ H    +    ++ EC   +   +GK  F+I GYGD  + + S      L L  V +VP+L++NL+S
Sbjct:  280 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKEAFAIVGYGDARVTIGSRVGTTDLLLKRVTHVPELNYNLVS 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16630.4165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6G0X3B5_9STRA6.650e-935.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KDA4_9PHAE2.480e-737.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPC5_9PHAE9.720e-737.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW7_9PHAE9.820e-737.66CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K4H5_9PHAE1.020e-637.66CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE1.020e-637.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE1.030e-637.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFZ8_9PHAE2.470e-637.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDW7_9PHAE8.330e-636.36CCHC-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16630contigH-elongata_contig16630:7232..7510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.4060683-CDS-H-elongata_contig16630:7231..75101622929973.4060683-CDS-H-elongata_contig16630:7231..7510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16630 7232..7510 -
1691679230.267399-CDS-H-elongata_contig16630:7231..75101691679230.267399-CDS-H-elongata_contig16630:7231..7510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16630 7232..7510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16630.4165.1prot_H-elongata_contig16630.4165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16630 7232..7510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16630.4165.1

>prot_H-elongata_contig16630.4165.1 ID=prot_H-elongata_contig16630.4165.1|Name=mRNA_H-elongata_contig16630.4165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
GKVEDERWVCDTGASQHFSNDSAHMLDFRECQTFMRTVSGKRFSIEGYGD
LILHLRSEGEVVHLKLCNVAYVPQLSHNLMSRRVVADSGGSYS
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mRNA from alignment at H-elongata_contig16630:7232..7510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16630.4165.1 ID=mRNA_H-elongata_contig16630.4165.1|Name=mRNA_H-elongata_contig16630.4165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig16630:7232..7510- (Himanthalia elongata Himel1 dioecious)
GGTAAGGTTGAGGACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCAGCA
TTTTAGTAATGACTCTGCGCACATGCTCGATTTCCGTGAATGTCAGACGT
TTATGCGGACGGTTAGCGGAAAGAGATTCTCGATCGAGGGTTACGGTGAC
CTTATCTTGCACCTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCTTTG
CAACGTAGCGTATGTGCCACAACTTTCTCACAATCTGATGTCACGTAGAG
TAGTAGCCGACAGTGGAGGTTCATACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig16630:7232..7510-

>mRNA_H-elongata_contig16630.4165.1 ID=mRNA_H-elongata_contig16630.4165.1|Name=mRNA_H-elongata_contig16630.4165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig16630:7232..7510- (Himanthalia elongata Himel1 dioecious)
GGTAAGGTTGAGGACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCAGCA
TTTTAGTAATGACTCTGCGCACATGCTCGATTTCCGTGAATGTCAGACGT
TTATGCGGACGGTTAGCGGAAAGAGATTCTCGATCGAGGGTTACGGTGAC
CTTATCTTGCACCTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCTTTG
CAACGTAGCGTATGTGCCACAACTTTCTCACAATCTGATGTCACGTAGAG
TAGTAGCCGACAGTGGAGGTTCATACTCCGGTAAGGTTGAGGACGAGCGT
TGGGTGTGTGACACCGGCGCTTCGCAGCATTTTAGTAATGACTCTGCGCA
CATGCTCGATTTCCGTGAATGTCAGACGTTTATGCGGACGGTTAGCGGAA
AGAGATTCTCGATCGAGGGTTACGGTGACCTTATCTTGCACCTTCGGTCT
GAGGGAGAGGTGGTACATCTCAAGCTTTGCAACGTAGCGTATGTGCCACA
ACTTTCTCACAATCTGATGTCACGTAGAGTAGTAGCCGACAGTGGAGGTT
CATACTCC
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